HHsearch alignment for GI: peg_887 and conserved domain: cd03226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.54 E-value=0.22 Score=29.58 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I~ 58 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 69989999889999899999999568577787389