HHsearch alignment for GI: peg_887 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.22  E-value=0.1  Score=31.51  Aligned_cols=32  Identities=28%  Similarity=0.347  Sum_probs=25.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf             898499998798733449999999881---98797
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII   39 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II   39 (133)
T Consensus        26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~   60 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT   60 (178)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             69999999999987599999999861766788699