HHsearch alignment for GI: peg_887 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.71 E-value=0.043 Score=33.83 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 2999999999999849999999964546