HHsearch alignment for GI: peg_887 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.61 E-value=0.081 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
T Consensus 26 ~~G~~vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999985999999996776