HHsearch alignment for GI: peg_887 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.79 E-value=0.054 Score=33.19 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 89849999879873344999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNL 30 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~L 30 (133)
T Consensus 19 ~~Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH
T ss_conf 59989999878996098983616