Query 537021.9.peg.887_1
Match_columns 133
No_of_seqs 116 out of 2417
Neff 5.6
Searched_HMMs 39220
Date Wed May 25 03:44:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_887.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0324 MiaA tRNA delta(2)-iso 100.0 0 0 302.3 12.0 113 8-130 1-113 (308)
2 PRK00091 miaA tRNA delta(2)-is 100.0 0 0 301.7 12.3 113 8-130 2-114 (304)
3 TIGR00174 miaA tRNA delta(2)-i 100.0 0 0 303.1 10.2 109 12-130 1-109 (307)
4 KOG1384 consensus 100.0 7.4E-39 1.9E-43 255.9 9.2 115 5-129 2-116 (348)
5 pfam01715 IPPT IPP transferase 99.9 7.9E-28 2E-32 189.3 7.1 76 44-129 1-76 (253)
6 pfam01745 IPT Isopentenyl tran 99.9 5.8E-22 1.5E-26 153.8 10.2 107 11-128 2-109 (232)
7 PRK05480 uridine kinase; Provi 98.2 6.1E-06 1.5E-10 57.1 7.0 77 5-93 1-80 (209)
8 TIGR00382 clpX ATP-dependent C 98.1 1.7E-06 4.4E-11 60.4 3.5 115 12-128 154-300 (452)
9 PRK08233 hypothetical protein; 98.0 3.2E-05 8.3E-10 52.7 7.1 39 8-46 1-40 (182)
10 PRK04220 2-phosphoglycerate ki 97.9 7.2E-05 1.8E-09 50.6 8.5 109 7-120 89-200 (306)
11 PRK00300 gmk guanylate kinase; 97.9 3.9E-06 1E-10 58.2 1.9 93 5-115 2-104 (208)
12 pfam00625 Guanylate_kin Guanyl 97.8 6.1E-05 1.6E-09 51.0 6.1 93 10-117 1-100 (182)
13 PRK05201 hslU ATP-dependent pr 97.7 3.2E-05 8.2E-10 52.7 3.8 38 9-46 49-86 (442)
14 PRK05342 clpX ATP-dependent pr 97.6 4.8E-05 1.2E-09 51.6 3.7 119 10-128 109-257 (411)
15 PRK08118 topology modulation p 97.6 5.6E-05 1.4E-09 51.2 3.8 36 11-46 2-37 (167)
16 cd02023 UMPK Uridine monophosp 97.6 6.4E-05 1.6E-09 50.9 3.9 37 12-50 1-40 (198)
17 TIGR03499 FlhF flagellar biosy 97.6 7.7E-05 2E-09 50.4 4.3 38 7-44 191-235 (282)
18 cd02028 UMPK_like Uridine mono 97.6 5.9E-05 1.5E-09 51.1 3.6 95 12-121 1-110 (179)
19 PRK11545 gntK gluconate kinase 97.6 8.2E-05 2.1E-09 50.3 4.1 42 4-45 2-43 (177)
20 PRK13948 shikimate kinase; Pro 97.5 0.00021 5.4E-09 47.7 5.9 78 1-97 1-78 (182)
21 cd02024 NRK1 Nicotinamide ribo 97.5 8.2E-05 2.1E-09 50.2 3.7 70 12-93 1-71 (187)
22 PRK09270 frcK putative fructos 97.5 0.00023 5.8E-09 47.6 5.7 73 8-93 32-111 (230)
23 COG0572 Udk Uridine kinase [Nu 97.5 0.00042 1.1E-08 45.9 7.0 102 9-122 7-121 (218)
24 smart00072 GuKc Guanylate kina 97.5 6.2E-05 1.6E-09 51.0 2.6 95 9-118 1-102 (184)
25 PRK12339 2-phosphoglycerate ki 97.5 0.00014 3.6E-09 48.8 4.4 103 9-120 2-107 (197)
26 KOG3308 consensus 97.5 0.0005 1.3E-08 45.5 7.1 75 8-94 2-77 (225)
27 COG1219 ClpX ATP-dependent pro 97.5 0.00012 3E-09 49.3 3.7 120 10-129 97-246 (408)
28 TIGR02639 ClpA ATP-dependent C 97.5 8.5E-05 2.2E-09 50.1 3.0 56 13-75 530-585 (774)
29 PRK07429 phosphoribulokinase; 97.4 0.0002 5.2E-09 47.9 4.6 109 3-125 1-121 (331)
30 PRK07261 topology modulation p 97.4 0.00012 3.1E-09 49.2 3.5 34 13-46 3-36 (171)
31 TIGR03263 guanyl_kin guanylate 97.4 0.00015 3.8E-09 48.7 3.9 56 10-74 1-56 (180)
32 PRK05703 flhF flagellar biosyn 97.4 0.00017 4.4E-09 48.3 4.0 37 8-44 208-251 (412)
33 pfam00448 SRP54 SRP54-type pro 97.4 0.00017 4.4E-09 48.3 4.0 35 10-44 1-40 (196)
34 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00012 3E-09 49.3 3.0 39 4-43 16-56 (265)
35 pfam00485 PRK Phosphoribulokin 97.4 0.00022 5.6E-09 47.7 4.2 109 12-124 1-124 (196)
36 PRK07667 uridine kinase; Provi 97.4 0.00018 4.6E-09 48.1 3.6 34 11-44 15-53 (190)
37 pfam06414 Zeta_toxin Zeta toxi 97.3 0.00088 2.2E-08 44.0 6.8 41 7-47 9-52 (191)
38 PTZ00301 uridine kinase; Provi 97.3 0.00029 7.4E-09 46.9 4.4 83 9-103 2-91 (210)
39 PRK09825 idnK D-gluconate kina 97.3 0.00025 6.5E-09 47.3 4.0 36 9-44 2-37 (176)
40 TIGR01978 sufC FeS assembly AT 97.3 0.0011 2.8E-08 43.4 6.6 82 9-95 25-108 (248)
41 PRK13477 bifunctional pantoate 97.2 0.00042 1.1E-08 46.0 4.2 47 3-51 277-323 (512)
42 cd02021 GntK Gluconate kinase 97.2 0.00033 8.3E-09 46.6 3.4 34 12-45 1-34 (150)
43 PRK12724 flagellar biosynthesi 97.2 0.00054 1.4E-08 45.3 4.3 39 8-46 221-265 (432)
44 PRK12337 2-phosphoglycerate ki 97.1 0.00054 1.4E-08 45.3 4.0 106 8-120 260-376 (492)
45 KOG0745 consensus 97.1 0.00048 1.2E-08 45.6 3.7 123 10-132 226-378 (564)
46 COG0396 sufC Cysteine desulfur 97.1 0.003 7.6E-08 40.8 7.7 78 9-91 29-108 (251)
47 PRK12723 flagellar biosynthesi 97.1 0.00066 1.7E-08 44.8 4.3 39 7-45 171-218 (388)
48 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00051 1.3E-08 45.4 3.7 45 12-56 2-49 (173)
49 PRK05057 aroK shikimate kinase 97.1 0.00082 2.1E-08 44.2 4.7 85 9-122 3-87 (172)
50 PRK06995 flhF flagellar biosyn 97.1 0.00062 1.6E-08 44.9 4.0 38 9-46 175-219 (404)
51 cd00009 AAA The AAA+ (ATPases 97.1 0.00053 1.3E-08 45.4 3.6 67 8-74 17-94 (151)
52 cd03115 SRP The signal recogni 97.1 0.0013 3.4E-08 42.9 5.5 33 12-44 2-39 (173)
53 pfam06068 TIP49 TIP49 C-termin 97.0 0.00055 1.4E-08 45.2 3.2 26 10-35 50-75 (395)
54 PRK04195 replication factor C 97.0 0.00093 2.4E-08 43.9 4.4 33 9-41 39-71 (403)
55 cd02025 PanK Pantothenate kina 97.0 0.00066 1.7E-08 44.8 3.5 69 12-93 1-76 (220)
56 PRK00131 aroK shikimate kinase 97.0 0.0012 3.1E-08 43.2 4.7 35 9-43 3-37 (175)
57 PRK12338 hypothetical protein; 97.0 0.00095 2.4E-08 43.8 4.2 108 8-122 2-119 (320)
58 COG1419 FlhF Flagellar GTP-bin 97.0 0.00094 2.4E-08 43.8 4.1 66 9-74 202-291 (407)
59 PRK00023 cmk cytidylate kinase 97.0 0.00091 2.3E-08 43.9 3.9 42 8-51 2-43 (225)
60 cd00071 GMPK Guanosine monopho 97.0 0.00096 2.5E-08 43.8 4.0 53 12-72 1-53 (137)
61 PRK03731 aroL shikimate kinase 97.0 0.0017 4.3E-08 42.3 5.2 81 10-120 2-82 (172)
62 PRK06696 uridine kinase; Valid 97.0 0.0009 2.3E-08 44.0 3.8 38 8-45 24-66 (227)
63 COG0542 clpA ATP-binding subun 97.0 0.00093 2.4E-08 43.9 3.9 66 12-84 523-599 (786)
64 PRK06731 flhF flagellar biosyn 96.9 0.0012 3E-08 43.2 4.3 39 6-44 71-114 (270)
65 PRK06547 hypothetical protein; 96.9 0.0012 3.2E-08 43.1 4.4 41 9-51 14-55 (184)
66 PRK11034 clpA ATP-dependent Cl 96.9 0.00054 1.4E-08 45.3 2.4 56 12-74 490-545 (758)
67 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0014 3.6E-08 42.8 4.2 61 7-74 591-656 (852)
68 TIGR00390 hslU heat shock prot 96.9 0.00085 2.2E-08 44.1 3.0 34 9-42 46-79 (463)
69 COG1224 TIP49 DNA helicase TIP 96.8 0.0011 2.7E-08 43.5 3.4 34 9-42 64-107 (450)
70 PRK06217 hypothetical protein; 96.8 0.0022 5.6E-08 41.6 5.0 51 11-63 2-54 (185)
71 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0014 3.5E-08 42.8 4.0 56 12-74 597-655 (852)
72 PRK13946 shikimate kinase; Pro 96.8 0.0024 6.1E-08 41.4 5.1 84 9-121 19-102 (195)
73 cd01918 HprK_C HprK/P, the bif 96.8 0.0019 4.9E-08 42.0 4.6 76 6-82 10-85 (149)
74 COG2074 2-phosphoglycerate kin 96.8 0.0016 4.1E-08 42.4 4.0 38 8-45 87-125 (299)
75 PRK05541 adenylylsulfate kinas 96.8 0.002 5.1E-08 41.9 4.4 42 4-45 1-47 (176)
76 pfam07724 AAA_2 AAA domain (Cd 96.8 0.0015 3.9E-08 42.6 3.8 36 12-47 5-43 (168)
77 CHL00095 clpC Clp protease ATP 96.8 0.0015 3.9E-08 42.6 3.7 60 8-74 535-599 (823)
78 cd02020 CMPK Cytidine monophos 96.7 0.0015 3.9E-08 42.6 3.5 31 12-42 1-31 (147)
79 TIGR02533 type_II_gspE general 96.7 0.0012 3.1E-08 43.1 3.0 56 10-80 245-300 (495)
80 PRK13947 shikimate kinase; Pro 96.7 0.0029 7.4E-08 40.9 4.9 66 12-96 3-68 (171)
81 PRK05800 cobU adenosylcobinami 96.7 0.0015 3.7E-08 42.7 3.3 47 10-67 1-48 (170)
82 PRK10865 protein disaggregatio 96.7 0.0017 4.2E-08 42.4 3.6 71 8-85 594-677 (857)
83 cd00464 SK Shikimate kinase (S 96.7 0.0032 8.2E-08 40.6 5.0 32 13-44 2-33 (154)
84 pfam03215 Rad17 Rad17 cell cyc 96.6 0.0027 6.8E-08 41.1 4.2 35 6-40 41-75 (490)
85 PRK13949 shikimate kinase; Pro 96.6 0.0042 1.1E-07 39.9 5.2 67 11-96 2-68 (169)
86 smart00382 AAA ATPases associa 96.6 0.0029 7.3E-08 40.9 4.3 38 9-46 1-41 (148)
87 COG1220 HslU ATP-dependent pro 96.6 0.0022 5.7E-08 41.6 3.6 36 8-43 48-83 (444)
88 TIGR02928 TIGR02928 orc1/cdc6 96.6 0.0032 8.2E-08 40.6 4.4 83 7-95 40-134 (383)
89 PRK09183 transposase/IS protei 96.6 0.0018 4.7E-08 42.1 3.1 48 9-56 100-150 (258)
90 COG1493 HprK Serine kinase of 96.6 0.0028 7.2E-08 40.9 4.1 69 10-79 145-214 (308)
91 COG1341 Predicted GTPase or GT 96.6 0.0071 1.8E-07 38.5 5.9 115 7-127 70-197 (398)
92 cd01131 PilT Pilus retraction 96.6 0.0071 1.8E-07 38.5 5.9 31 11-41 2-36 (198)
93 TIGR02538 type_IV_pilB type IV 96.6 0.00094 2.4E-08 43.9 1.4 52 11-78 327-379 (577)
94 COG0194 Gmk Guanylate kinase [ 96.5 0.006 1.5E-07 39.0 5.1 55 9-74 3-58 (191)
95 pfam00437 GSPII_E Type II/IV s 96.5 0.0031 7.8E-08 40.7 3.6 27 9-35 138-164 (283)
96 TIGR00763 lon ATP-dependent pr 96.4 0.0028 7.3E-08 40.9 3.3 59 6-74 445-504 (941)
97 PRK12726 flagellar biosynthesi 96.4 0.0045 1.1E-07 39.8 4.3 38 8-45 204-246 (407)
98 PRK06620 hypothetical protein; 96.4 0.0048 1.2E-07 39.5 4.4 35 9-43 43-77 (214)
99 TIGR00017 cmk cytidylate kinas 96.4 0.0034 8.6E-08 40.5 3.5 43 9-53 1-43 (223)
100 cd00544 CobU Adenosylcobinamid 96.4 0.0021 5.2E-08 41.8 2.4 47 12-69 1-48 (169)
101 PRK08903 hypothetical protein; 96.4 0.017 4.4E-07 36.2 7.1 26 9-34 41-66 (227)
102 COG0283 Cmk Cytidylate kinase 96.4 0.0037 9.4E-08 40.3 3.7 42 10-53 4-45 (222)
103 COG1428 Deoxynucleoside kinase 96.4 0.0041 1E-07 40.0 3.9 31 9-39 3-33 (216)
104 TIGR01313 therm_gnt_kin carboh 96.4 0.0018 4.6E-08 42.2 2.0 68 13-97 1-73 (175)
105 COG0563 Adk Adenylate kinase a 96.4 0.0041 1E-07 40.0 3.7 31 12-42 2-32 (178)
106 PRK06526 transposase; Provisio 96.3 0.0033 8.5E-08 40.5 3.1 44 11-54 99-145 (254)
107 PRK12269 bifunctional cytidyla 96.3 0.0045 1.2E-07 39.7 3.7 40 10-51 34-73 (863)
108 PRK08181 transposase; Validate 96.3 0.0037 9.3E-08 40.3 3.1 49 10-58 106-157 (269)
109 COG1102 Cmk Cytidylate kinase 96.3 0.0048 1.2E-07 39.5 3.7 36 12-49 2-37 (179)
110 PRK00081 coaE dephospho-CoA ki 96.2 0.0061 1.6E-07 38.9 4.1 37 11-48 3-41 (199)
111 PRK09087 hypothetical protein; 96.2 0.0073 1.9E-07 38.4 4.5 35 8-42 42-76 (226)
112 TIGR03167 tRNA_sel_U_synt tRNA 96.2 0.0087 2.2E-07 38.0 4.7 53 7-60 124-180 (311)
113 KOG0733 consensus 96.2 0.044 1.1E-06 33.7 8.3 107 10-119 223-337 (802)
114 TIGR00455 apsK adenylylsulfate 96.2 0.0071 1.8E-07 38.5 4.2 40 6-45 15-59 (187)
115 TIGR01420 pilT_fam twitching m 96.2 0.0025 6.4E-08 41.3 1.8 78 4-93 121-198 (350)
116 PRK11889 flhF flagellar biosyn 96.2 0.0061 1.6E-07 38.9 3.8 39 8-46 239-282 (436)
117 cd01428 ADK Adenylate kinase ( 96.1 0.0068 1.7E-07 38.6 3.8 30 13-42 2-31 (194)
118 pfam00004 AAA ATPase family as 96.1 0.0047 1.2E-07 39.6 2.9 35 13-47 1-35 (131)
119 PRK02496 adk adenylate kinase; 96.1 0.0082 2.1E-07 38.1 4.1 32 10-42 2-33 (185)
120 PRK10078 ribose 1,5-bisphospho 96.1 0.0091 2.3E-07 37.9 4.3 52 9-71 1-52 (184)
121 pfam01121 CoaE Dephospho-CoA k 96.1 0.0086 2.2E-07 38.0 4.2 64 12-84 2-68 (179)
122 pfam01695 IstB IstB-like ATP b 96.1 0.0053 1.4E-07 39.3 3.0 65 9-73 46-117 (178)
123 pfam07726 AAA_3 ATPase family 96.0 0.0066 1.7E-07 38.7 3.5 28 13-40 2-29 (131)
124 TIGR02525 plasmid_TraJ plasmid 96.0 0.0043 1.1E-07 39.8 2.5 23 13-35 152-174 (374)
125 PRK13768 GTPase; Provisional 96.0 0.01 2.7E-07 37.5 4.4 36 10-45 2-42 (253)
126 cd02022 DPCK Dephospho-coenzym 96.0 0.0079 2E-07 38.3 3.7 35 12-47 1-37 (179)
127 pfam02283 CobU Cobinamide kina 96.0 0.0043 1.1E-07 39.9 2.3 40 13-63 1-40 (166)
128 PRK11860 bifunctional 3-phosph 96.0 0.0084 2.2E-07 38.1 3.8 42 8-51 440-481 (662)
129 PRK12727 flagellar biosynthesi 96.0 0.007 1.8E-07 38.6 3.3 38 9-46 347-391 (557)
130 PRK03839 putative kinase; Prov 96.0 0.013 3.4E-07 36.9 4.7 33 12-44 2-34 (180)
131 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.029 7.3E-07 34.9 6.4 28 9-36 37-64 (226)
132 PRK08154 anaerobic benzoate ca 95.9 0.023 5.8E-07 35.5 5.8 84 8-119 131-214 (304)
133 cd02026 PRK Phosphoribulokinas 95.9 0.0082 2.1E-07 38.2 3.5 67 12-92 1-70 (273)
134 COG2087 CobU Adenosyl cobinami 95.9 0.01 2.6E-07 37.5 4.0 93 11-128 1-94 (175)
135 PRK00349 uvrA excinuclease ABC 95.9 0.0067 1.7E-07 38.7 2.9 55 8-66 24-82 (944)
136 PRK06762 hypothetical protein; 95.8 0.014 3.6E-07 36.8 4.4 86 9-95 1-93 (166)
137 PRK06835 DNA replication prote 95.8 0.044 1.1E-06 33.8 6.9 47 7-53 180-229 (330)
138 COG0237 CoaE Dephospho-CoA kin 95.8 0.017 4.2E-07 36.3 4.6 69 10-86 2-72 (201)
139 cd01130 VirB11-like_ATPase Typ 95.8 0.0083 2.1E-07 38.1 3.1 28 9-36 24-51 (186)
140 PRK09518 bifunctional cytidyla 95.8 0.011 2.8E-07 37.4 3.7 40 11-52 5-44 (714)
141 PRK00279 adk adenylate kinase; 95.8 0.012 3E-07 37.2 3.8 30 13-42 3-32 (215)
142 TIGR01192 chvA glucan exporter 95.8 0.014 3.5E-07 36.8 4.2 44 6-55 357-402 (592)
143 pfam07728 AAA_5 AAA domain (dy 95.8 0.0086 2.2E-07 38.0 3.1 23 13-35 2-24 (139)
144 PRK03992 proteasome-activating 95.8 0.018 4.6E-07 36.1 4.7 42 8-49 164-205 (390)
145 PRK08727 hypothetical protein; 95.7 0.043 1.1E-06 33.8 6.6 27 9-35 40-66 (233)
146 PRK13900 type IV secretion sys 95.7 0.0093 2.4E-07 37.8 3.1 27 10-36 160-186 (332)
147 CHL00195 ycf46 Ycf46; Provisio 95.7 0.02 5.1E-07 35.8 4.7 67 8-74 257-328 (491)
148 PRK13951 bifunctional shikimat 95.7 0.026 6.6E-07 35.2 5.3 66 13-97 3-68 (488)
149 cd02030 NDUO42 NADH:Ubiquinone 95.7 0.0095 2.4E-07 37.8 3.0 28 12-39 1-28 (219)
150 PRK04182 cytidylate kinase; Pr 95.7 0.017 4.4E-07 36.2 4.3 37 12-50 2-38 (178)
151 pfam07475 Hpr_kinase_C HPr Ser 95.7 0.014 3.6E-07 36.7 3.8 81 5-86 13-94 (171)
152 PRK00635 excinuclease ABC subu 95.6 0.0091 2.3E-07 37.9 2.8 43 8-50 959-1006(1809)
153 PRK13342 recombination factor 95.6 0.014 3.5E-07 36.8 3.7 38 6-43 33-70 (417)
154 cd01120 RecA-like_NTPases RecA 95.6 0.13 3.3E-06 30.9 8.5 31 12-42 1-34 (165)
155 KOG1942 consensus 95.5 0.015 3.7E-07 36.6 3.5 28 9-36 63-90 (456)
156 TIGR01526 nadR_NMN_Atrans nico 95.5 0.014 3.5E-07 36.8 3.4 63 11-74 176-255 (346)
157 PRK10787 DNA-binding ATP-depen 95.5 0.016 4E-07 36.4 3.7 33 5-37 344-376 (784)
158 PRK10246 exonuclease subunit S 95.5 0.017 4.2E-07 36.3 3.8 30 8-37 28-57 (1047)
159 PRK08084 DNA replication initi 95.5 0.043 1.1E-06 33.8 5.9 91 8-118 43-139 (235)
160 PRK03846 adenylylsulfate kinas 95.5 0.021 5.5E-07 35.6 4.3 40 6-45 20-64 (198)
161 PRK12377 putative replication 95.5 0.013 3.2E-07 37.0 3.0 29 5-34 97-125 (248)
162 PRK08116 hypothetical protein; 95.5 0.085 2.2E-06 32.0 7.2 51 8-58 106-159 (262)
163 PRK13851 type IV secretion sys 95.4 0.014 3.5E-07 36.8 3.0 28 9-36 161-188 (343)
164 smart00763 AAA_PrkA PrkA AAA d 95.4 0.018 4.5E-07 36.2 3.5 28 7-34 75-102 (361)
165 PRK00440 rfc replication facto 95.4 0.02 5.2E-07 35.8 3.8 29 9-37 36-64 (318)
166 pfam06309 Torsin Torsin. This 95.4 0.051 1.3E-06 33.4 5.8 69 7-97 50-118 (127)
167 PRK05642 DNA replication initi 95.4 0.048 1.2E-06 33.5 5.7 83 9-97 44-128 (234)
168 TIGR00972 3a0107s01c2 phosphat 95.3 0.011 2.9E-07 37.3 2.4 56 8-65 25-83 (248)
169 PRK00625 shikimate kinase; Pro 95.3 0.023 5.8E-07 35.5 3.9 83 13-122 3-86 (173)
170 PRK06893 DNA replication initi 95.3 0.2 5.2E-06 29.8 8.7 92 7-117 36-132 (229)
171 COG0466 Lon ATP-dependent Lon 95.3 0.026 6.7E-07 35.1 4.1 59 6-74 346-404 (782)
172 KOG3220 consensus 95.2 0.022 5.6E-07 35.6 3.6 64 11-82 2-67 (225)
173 KOG2004 consensus 95.2 0.019 4.9E-07 35.9 3.3 33 5-37 433-465 (906)
174 PRK11160 cysteine/glutathione 95.2 0.02 5E-07 35.9 3.3 27 8-34 365-391 (575)
175 cd00227 CPT Chloramphenicol (C 95.2 0.031 7.9E-07 34.7 4.3 36 10-45 2-39 (175)
176 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.026 6.7E-07 35.1 3.9 27 8-34 27-53 (238)
177 PRK11784 tRNA 2-selenouridine 95.2 0.024 6.1E-07 35.4 3.7 49 11-60 138-189 (333)
178 COG0464 SpoVK ATPases of the A 95.2 0.033 8.3E-07 34.5 4.4 67 8-75 274-346 (494)
179 PRK06921 hypothetical protein; 95.2 0.027 6.9E-07 35.0 3.9 105 8-126 114-229 (265)
180 pfam01583 APS_kinase Adenylyls 95.2 0.031 7.8E-07 34.7 4.2 37 9-45 1-42 (157)
181 PRK09580 sufC cysteine desulfu 95.2 0.078 2E-06 32.2 6.3 45 8-59 25-74 (248)
182 PRK10522 multidrug transporter 95.2 0.018 4.6E-07 36.1 3.0 27 8-34 347-373 (547)
183 PRK11174 cysteine/glutathione 95.2 0.025 6.5E-07 35.2 3.7 28 8-35 374-401 (588)
184 COG3172 NadR Predicted ATPase/ 95.1 0.02 5.1E-07 35.8 3.2 26 11-36 9-34 (187)
185 TIGR00618 sbcc exonuclease Sbc 95.1 0.02 5E-07 35.9 3.1 41 9-49 29-72 (1063)
186 TIGR02782 TrbB_P P-type conjug 95.1 0.015 3.8E-07 36.6 2.5 27 7-34 137-163 (315)
187 PRK12402 replication factor C 95.1 0.027 6.9E-07 35.0 3.8 30 8-37 34-63 (337)
188 COG0703 AroK Shikimate kinase 95.0 0.04 1E-06 34.0 4.5 69 10-97 2-70 (172)
189 COG1223 Predicted ATPase (AAA+ 95.0 0.028 7.3E-07 34.9 3.6 40 8-47 149-188 (368)
190 PRK13657 cyclic beta-1,2-gluca 95.0 0.029 7.3E-07 34.9 3.6 28 8-35 359-386 (585)
191 TIGR02868 CydC ABC transporter 95.0 0.022 5.5E-07 35.6 3.0 27 9-35 386-412 (566)
192 cd02027 APSK Adenosine 5'-phos 94.9 0.03 7.6E-07 34.8 3.6 34 12-45 1-39 (149)
193 PRK10789 putative multidrug tr 94.9 0.031 7.8E-07 34.7 3.6 28 8-35 339-366 (569)
194 PTZ00088 adenylate kinase 1; P 94.9 0.033 8.3E-07 34.5 3.7 31 12-42 2-32 (225)
195 PRK13898 type IV secretion sys 94.9 0.035 9E-07 34.3 3.9 34 12-45 448-484 (800)
196 COG1132 MdlB ABC-type multidru 94.9 0.047 1.2E-06 33.6 4.5 33 8-40 353-388 (567)
197 PRK08099 nicotinamide-nucleoti 94.9 0.028 7.2E-07 34.9 3.4 28 10-37 231-258 (411)
198 PRK10790 putative multidrug tr 94.9 0.035 8.9E-07 34.4 3.8 28 8-35 365-392 (593)
199 PRK00635 excinuclease ABC subu 94.9 0.017 4.2E-07 36.3 2.2 54 8-65 24-81 (1809)
200 PRK00411 cdc6 cell division co 94.8 0.076 1.9E-06 32.3 5.5 29 7-35 52-80 (394)
201 pfam05496 RuvB_N Holliday junc 94.8 0.03 7.6E-07 34.8 3.3 29 13-41 53-83 (234)
202 PRK07133 DNA polymerase III su 94.8 0.029 7.4E-07 34.9 3.3 73 9-96 39-111 (718)
203 pfam02562 PhoH PhoH-like prote 94.8 0.031 7.8E-07 34.7 3.4 91 9-114 18-108 (205)
204 PRK13830 conjugal transfer pro 94.8 0.039 9.9E-07 34.1 3.9 33 12-44 458-494 (818)
205 pfam07931 CPT Chloramphenicol 94.8 0.043 1.1E-06 33.8 4.0 35 10-44 1-37 (174)
206 PRK11176 lipid transporter ATP 94.8 0.028 7.2E-07 34.9 3.1 28 8-35 366-393 (581)
207 KOG3354 consensus 94.7 0.035 8.9E-07 34.4 3.5 37 8-44 10-46 (191)
208 cd03291 ABCC_CFTR1 The CFTR su 94.7 0.028 7.1E-07 34.9 3.0 27 8-34 61-87 (282)
209 cd03248 ABCC_TAP TAP, the Tran 94.7 0.043 1.1E-06 33.8 3.9 28 8-35 38-65 (226)
210 pfam00308 Bac_DnaA Bacterial d 94.7 0.15 3.9E-06 30.5 6.8 85 11-97 35-128 (219)
211 cd01673 dNK Deoxyribonucleosid 94.7 0.037 9.5E-07 34.2 3.6 28 12-39 1-28 (193)
212 COG2804 PulE Type II secretory 94.7 0.031 7.8E-07 34.7 3.1 32 6-37 254-285 (500)
213 PRK00889 adenylylsulfate kinas 94.7 0.049 1.2E-06 33.5 4.1 38 8-45 2-44 (175)
214 PRK10070 glycine betaine trans 94.7 0.064 1.6E-06 32.8 4.7 47 8-63 52-101 (400)
215 PRK01184 hypothetical protein; 94.6 0.055 1.4E-06 33.2 4.3 31 11-42 2-32 (183)
216 COG0529 CysC Adenylylsulfate k 94.5 0.038 9.8E-07 34.1 3.4 44 6-51 19-67 (197)
217 COG1373 Predicted ATPase (AAA+ 94.5 0.13 3.2E-06 31.0 6.0 80 8-93 35-118 (398)
218 pfam00406 ADK Adenylate kinase 94.5 0.027 6.9E-07 35.0 2.5 28 15-42 1-28 (186)
219 KOG3877 consensus 94.5 0.038 9.6E-07 34.2 3.2 36 8-43 69-112 (393)
220 PRK10744 phosphate transporter 94.5 0.082 2.1E-06 32.1 5.0 27 8-34 34-60 (257)
221 cd03238 ABC_UvrA The excision 94.5 0.13 3.3E-06 30.9 5.9 26 8-33 19-44 (176)
222 cd03290 ABCC_SUR1_N The SUR do 94.5 0.039 9.8E-07 34.1 3.2 31 8-38 25-58 (218)
223 TIGR02788 VirB11 P-type DNA tr 94.4 0.038 9.8E-07 34.1 3.2 34 9-42 157-192 (328)
224 cd00983 recA RecA is a bacter 94.4 0.077 2E-06 32.3 4.7 39 8-46 53-94 (325)
225 PRK13833 conjugal transfer pro 94.4 0.036 9.2E-07 34.3 2.9 27 9-35 143-169 (323)
226 cd02019 NK Nucleoside/nucleoti 94.4 0.032 8.2E-07 34.6 2.6 23 12-34 1-23 (69)
227 PRK13631 cbiO cobalt transport 94.3 0.046 1.2E-06 33.6 3.4 27 8-34 50-76 (320)
228 KOG0741 consensus 94.3 0.046 1.2E-06 33.7 3.4 39 11-49 539-580 (744)
229 PRK05896 DNA polymerase III su 94.3 0.045 1.1E-06 33.7 3.3 30 8-37 36-65 (613)
230 pfam08298 AAA_PrkA PrkA AAA do 94.3 0.047 1.2E-06 33.6 3.4 31 6-36 81-111 (358)
231 COG0419 SbcC ATPase involved i 94.3 0.053 1.4E-06 33.2 3.7 27 8-34 23-49 (908)
232 COG4088 Predicted nucleotide k 94.3 0.027 7E-07 35.0 2.1 28 11-38 2-29 (261)
233 KOG1969 consensus 94.3 0.066 1.7E-06 32.7 4.1 33 8-40 324-356 (877)
234 COG2805 PilT Tfp pilus assembl 94.3 0.043 1.1E-06 33.8 3.1 31 5-35 120-150 (353)
235 KOG0734 consensus 94.3 0.23 5.8E-06 29.4 6.8 117 8-132 335-463 (752)
236 COG1484 DnaC DNA replication p 94.3 0.042 1.1E-06 33.9 3.0 80 9-88 104-193 (254)
237 pfam02456 Adeno_IVa2 Adenoviru 94.2 0.047 1.2E-06 33.6 3.3 28 4-31 81-108 (370)
238 KOG0744 consensus 94.2 0.04 1E-06 34.0 2.9 89 7-95 174-292 (423)
239 PRK13853 type IV secretion sys 94.2 0.063 1.6E-06 32.8 3.8 33 13-45 429-468 (789)
240 PRK03918 chromosome segregatio 94.1 0.053 1.3E-06 33.3 3.4 26 9-34 22-47 (882)
241 TIGR01587 cas3_core CRISPR-ass 94.1 0.038 9.7E-07 34.1 2.6 22 12-33 1-22 (424)
242 COG4639 Predicted kinase [Gene 94.1 0.12 3E-06 31.2 5.1 38 10-49 2-39 (168)
243 TIGR00630 uvra excinuclease AB 94.1 0.037 9.3E-07 34.2 2.5 52 8-63 20-75 (956)
244 PRK13894 conjugal transfer ATP 94.1 0.046 1.2E-06 33.6 3.0 26 9-34 148-173 (320)
245 cd03289 ABCC_CFTR2 The CFTR su 94.1 0.062 1.6E-06 32.9 3.7 28 8-35 28-55 (275)
246 PRK10536 hypothetical protein; 94.1 0.055 1.4E-06 33.2 3.4 74 9-96 73-146 (262)
247 TIGR03015 pepcterm_ATPase puta 94.1 0.26 6.7E-06 29.1 6.8 31 6-36 39-69 (269)
248 TIGR01842 type_I_sec_PrtD type 94.1 0.037 9.5E-07 34.2 2.5 79 8-94 354-439 (556)
249 cd03246 ABCC_Protease_Secretio 94.1 0.052 1.3E-06 33.3 3.2 28 8-35 26-53 (173)
250 KOG0737 consensus 94.0 0.052 1.3E-06 33.3 3.2 54 6-66 123-176 (386)
251 cd03251 ABCC_MsbA MsbA is an e 94.0 0.063 1.6E-06 32.8 3.6 27 8-34 26-52 (234)
252 KOG1970 consensus 94.0 0.073 1.9E-06 32.4 3.9 32 8-39 108-139 (634)
253 PRK13873 conjugal transfer ATP 94.0 0.066 1.7E-06 32.7 3.7 33 12-44 443-479 (815)
254 pfam03205 MobB Molybdopterin g 94.0 0.071 1.8E-06 32.5 3.8 35 11-45 1-41 (122)
255 PRK10261 glutathione transport 94.0 0.088 2.3E-06 31.9 4.3 66 8-73 40-109 (623)
256 cd01129 PulE-GspE PulE/GspE Th 94.0 0.06 1.5E-06 32.9 3.4 31 5-35 75-105 (264)
257 KOG1051 consensus 94.0 0.048 1.2E-06 33.5 2.9 35 11-45 592-629 (898)
258 PRK11331 5-methylcytosine-spec 93.9 0.06 1.5E-06 32.9 3.3 29 9-37 193-221 (459)
259 cd03253 ABCC_ATM1_transporter 93.9 0.068 1.7E-06 32.6 3.5 27 8-34 25-51 (236)
260 cd03254 ABCC_Glucan_exporter_l 93.9 0.073 1.9E-06 32.4 3.7 27 8-34 27-53 (229)
261 pfam00154 RecA recA bacterial 93.9 0.12 3E-06 31.2 4.7 40 8-47 50-92 (322)
262 cd03288 ABCC_SUR2 The SUR doma 93.8 0.068 1.7E-06 32.6 3.4 28 8-35 45-72 (257)
263 PRK13635 cbiO cobalt transport 93.8 0.067 1.7E-06 32.6 3.4 28 8-35 31-58 (279)
264 TIGR03574 selen_PSTK L-seryl-t 93.8 0.27 7E-06 28.9 6.5 31 12-42 1-36 (249)
265 COG1136 SalX ABC-type antimicr 93.8 0.07 1.8E-06 32.5 3.4 72 8-86 29-105 (226)
266 cd03270 ABC_UvrA_I The excisio 93.8 0.054 1.4E-06 33.2 2.9 23 8-30 19-41 (226)
267 PRK13646 cbiO cobalt transport 93.7 0.071 1.8E-06 32.5 3.4 27 8-34 31-57 (286)
268 TIGR00635 ruvB Holliday juncti 93.7 0.06 1.5E-06 33.0 3.0 26 13-38 33-58 (305)
269 PRK10867 signal recognition pa 93.7 0.28 7.2E-06 28.9 6.5 73 7-90 97-177 (453)
270 PRK09361 radB DNA repair and r 93.7 0.12 3.1E-06 31.1 4.6 35 9-43 22-59 (224)
271 PRK13341 recombination factor 93.7 0.088 2.3E-06 31.9 3.8 35 6-40 48-82 (726)
272 PRK08451 DNA polymerase III su 93.7 0.074 1.9E-06 32.4 3.4 29 9-37 35-63 (523)
273 PRK13644 cbiO cobalt transport 93.6 0.075 1.9E-06 32.4 3.4 31 8-38 26-59 (274)
274 cd03240 ABC_Rad50 The catalyti 93.6 0.24 6.1E-06 29.3 6.0 31 7-37 19-49 (204)
275 PRK13651 cobalt transporter AT 93.6 0.077 2E-06 32.3 3.4 31 8-38 31-64 (304)
276 cd03250 ABCC_MRP_domain1 Domai 93.6 0.07 1.8E-06 32.5 3.2 27 8-34 29-55 (204)
277 cd03245 ABCC_bacteriocin_expor 93.6 0.069 1.8E-06 32.6 3.2 27 8-34 28-54 (220)
278 PRK06647 DNA polymerase III su 93.6 0.073 1.9E-06 32.4 3.3 29 9-37 37-65 (560)
279 cd03252 ABCC_Hemolysin The ABC 93.6 0.081 2.1E-06 32.2 3.5 27 8-34 26-52 (237)
280 PRK10418 nikD nickel transport 93.6 0.042 1.1E-06 33.9 2.0 29 8-36 27-55 (254)
281 cd03296 ABC_CysA_sulfate_impor 93.6 0.077 2E-06 32.3 3.3 27 8-34 26-52 (239)
282 COG1474 CDC6 Cdc6-related prot 93.6 0.12 3E-06 31.1 4.3 28 10-37 42-69 (366)
283 PRK13640 cbiO cobalt transport 93.6 0.077 2E-06 32.3 3.3 27 8-34 32-58 (283)
284 PRK13547 hmuV hemin importer A 93.6 0.25 6.4E-06 29.2 6.0 28 8-35 25-52 (273)
285 PRK10436 hypothetical protein; 93.6 0.077 2E-06 32.3 3.3 32 5-36 210-241 (461)
286 cd03369 ABCC_NFT1 Domain 2 of 93.5 0.1 2.6E-06 31.5 3.9 28 8-35 32-59 (207)
287 PRK11231 fecE iron-dicitrate t 93.5 0.39 1E-05 28.0 6.9 27 8-34 26-52 (255)
288 PRK07471 DNA polymerase III su 93.5 0.28 7.2E-06 28.9 6.1 29 8-36 37-65 (363)
289 PRK09302 circadian clock prote 93.5 0.091 2.3E-06 31.8 3.6 24 9-32 265-288 (501)
290 COG0470 HolB ATPase involved i 93.5 0.08 2.1E-06 32.2 3.3 29 9-37 23-51 (325)
291 cd03228 ABCC_MRP_Like The MRP 93.5 0.082 2.1E-06 32.1 3.4 28 8-35 26-53 (171)
292 COG0630 VirB11 Type IV secreto 93.5 0.078 2E-06 32.2 3.3 29 8-36 141-169 (312)
293 PRK05506 bifunctional sulfate 93.5 0.13 3.3E-06 30.9 4.4 38 8-45 441-483 (613)
294 PRK10247 putative ABC transpor 93.5 0.086 2.2E-06 32.0 3.4 27 8-34 31-57 (225)
295 TIGR00602 rad24 checkpoint pro 93.4 0.071 1.8E-06 32.5 3.0 97 9-114 114-249 (670)
296 COG0593 DnaA ATPase involved i 93.4 0.095 2.4E-06 31.7 3.6 41 10-50 113-158 (408)
297 TIGR03158 cas3_cyano CRISPR-as 93.4 0.13 3.4E-06 30.8 4.3 25 7-31 11-35 (357)
298 TIGR02524 dot_icm_DotB Dot/Icm 93.4 0.065 1.7E-06 32.7 2.7 66 6-74 130-203 (358)
299 PRK13634 cbiO cobalt transport 93.4 0.083 2.1E-06 32.1 3.3 27 8-34 18-44 (276)
300 COG0714 MoxR-like ATPases [Gen 93.4 0.067 1.7E-06 32.6 2.8 39 10-51 43-81 (329)
301 PRK13891 conjugal transfer pro 93.4 0.1 2.6E-06 31.5 3.7 31 13-43 491-525 (852)
302 PRK09354 recA recombinase A; P 93.4 0.14 3.7E-06 30.6 4.5 38 8-45 58-98 (350)
303 PRK01156 chromosome segregatio 93.4 0.091 2.3E-06 31.8 3.4 29 9-37 22-50 (895)
304 pfam10412 TrwB_AAD_bind Type I 93.3 0.16 4.1E-06 30.4 4.7 38 7-44 12-52 (386)
305 COG3265 GntK Gluconate kinase 93.3 0.059 1.5E-06 33.0 2.4 30 16-45 1-30 (161)
306 COG1936 Predicted nucleotide k 93.3 0.11 2.7E-06 31.4 3.7 31 11-42 1-31 (180)
307 PRK13549 xylose transporter AT 93.3 0.14 3.7E-06 30.6 4.3 26 9-34 30-55 (513)
308 cd00984 DnaB_C DnaB helicase C 93.2 0.095 2.4E-06 31.7 3.4 34 9-42 12-51 (242)
309 PRK13645 cbiO cobalt transport 93.2 0.093 2.4E-06 31.8 3.3 33 8-40 35-70 (289)
310 cd03247 ABCC_cytochrome_bd The 93.2 0.1 2.6E-06 31.5 3.5 32 8-39 26-60 (178)
311 pfam03029 ATP_bind_1 Conserved 93.2 0.068 1.7E-06 32.6 2.6 31 15-45 1-36 (234)
312 PRK11264 putative amino-acid A 93.2 0.098 2.5E-06 31.6 3.3 26 8-33 25-50 (248)
313 COG2256 MGS1 ATPase related to 93.1 0.11 2.7E-06 31.5 3.5 36 7-42 45-80 (436)
314 COG0645 Predicted kinase [Gene 93.1 0.13 3.4E-06 30.8 4.0 64 10-73 1-69 (170)
315 PRK05428 HPr kinase/phosphoryl 93.1 0.12 3.1E-06 31.1 3.8 80 6-86 142-222 (308)
316 pfam06745 KaiC KaiC. This fami 93.1 0.097 2.5E-06 31.7 3.2 23 9-31 18-40 (231)
317 cd00820 PEPCK_HprK Phosphoenol 93.0 0.066 1.7E-06 32.7 2.3 38 11-49 16-53 (107)
318 cd03257 ABC_NikE_OppD_transpor 93.0 0.1 2.6E-06 31.6 3.3 43 8-57 29-74 (228)
319 COG1122 CbiO ABC-type cobalt t 93.0 0.097 2.5E-06 31.7 3.1 51 8-65 28-81 (235)
320 pfam08433 KTI12 Chromatin asso 93.0 0.096 2.4E-06 31.7 3.1 34 12-45 1-39 (266)
321 pfam00910 RNA_helicase RNA hel 93.0 0.074 1.9E-06 32.4 2.5 23 13-35 1-23 (105)
322 cd03271 ABC_UvrA_II The excisi 93.0 0.097 2.5E-06 31.7 3.1 21 8-28 19-39 (261)
323 PTZ00243 ABC transporter; Prov 92.9 0.11 2.8E-06 31.4 3.3 24 11-34 1337-1360(1560)
324 pfam01202 SKI Shikimate kinase 92.9 0.14 3.7E-06 30.6 3.9 73 20-121 2-74 (158)
325 cd03279 ABC_sbcCD SbcCD and ot 92.9 0.13 3.3E-06 30.9 3.7 29 9-37 27-55 (213)
326 pfam00931 NB-ARC NB-ARC domain 92.9 0.083 2.1E-06 32.1 2.7 29 4-32 13-41 (285)
327 PRK04328 hypothetical protein; 92.9 0.12 3.2E-06 31.0 3.6 34 9-42 23-61 (250)
328 cd03297 ABC_ModC_molybdenum_tr 92.9 0.11 2.9E-06 31.2 3.4 27 8-34 21-47 (214)
329 cd01393 recA_like RecA is a b 92.9 0.13 3.4E-06 30.8 3.7 25 9-33 18-42 (226)
330 PRK13636 cbiO cobalt transport 92.9 0.12 3E-06 31.2 3.4 31 8-38 30-63 (285)
331 COG1120 FepC ABC-type cobalami 92.9 0.17 4.4E-06 30.2 4.3 28 8-35 26-53 (258)
332 cd03234 ABCG_White The White s 92.9 0.12 3.1E-06 31.1 3.5 28 8-35 31-58 (226)
333 pfam03796 DnaB_C DnaB-like hel 92.9 0.11 2.8E-06 31.3 3.3 26 9-34 18-43 (186)
334 COG4962 CpaF Flp pilus assembl 92.9 0.21 5.4E-06 29.6 4.7 68 11-90 174-246 (355)
335 PRK06305 DNA polymerase III su 92.9 0.11 2.7E-06 31.5 3.2 30 9-38 38-67 (462)
336 PRK00771 signal recognition pa 92.9 0.19 4.9E-06 29.9 4.5 46 8-64 95-145 (433)
337 PRK07270 DNA polymerase III su 92.9 0.1 2.7E-06 31.5 3.1 28 10-37 37-64 (557)
338 PRK11022 dppD dipeptide transp 92.8 0.44 1.1E-05 27.7 6.3 55 8-66 31-87 (327)
339 smart00487 DEXDc DEAD-like hel 92.8 0.12 3.1E-06 31.1 3.5 41 11-51 25-75 (201)
340 PRK13647 cbiO cobalt transport 92.8 0.12 3E-06 31.2 3.4 27 8-34 29-55 (273)
341 PRK13650 cbiO cobalt transport 92.8 0.12 3E-06 31.2 3.3 28 8-35 28-55 (276)
342 PRK13639 cbiO cobalt transport 92.8 0.12 3E-06 31.1 3.4 31 8-38 26-59 (275)
343 cd01123 Rad51_DMC1_radA Rad51_ 92.8 0.21 5.4E-06 29.6 4.7 35 9-43 18-61 (235)
344 PRK13632 cbiO cobalt transport 92.8 0.12 3E-06 31.2 3.3 27 8-34 34-60 (273)
345 cd01122 GP4d_helicase GP4d_hel 92.8 0.12 3E-06 31.2 3.3 25 9-33 29-53 (271)
346 cd03260 ABC_PstB_phosphate_tra 92.8 0.086 2.2E-06 32.0 2.6 49 8-56 24-73 (227)
347 cd03294 ABC_Pro_Gly_Bertaine T 92.8 0.12 3E-06 31.2 3.3 27 8-34 48-74 (269)
348 cd03300 ABC_PotA_N PotA is an 92.7 0.13 3.2E-06 31.0 3.4 33 8-40 24-59 (232)
349 CHL00131 ycf16 sulfate ABC tra 92.7 0.12 2.9E-06 31.2 3.2 25 8-32 30-54 (252)
350 TIGR03415 ABC_choXWV_ATP choli 92.7 0.13 3.2E-06 31.0 3.4 27 8-34 48-74 (382)
351 cd03299 ABC_ModC_like Archeal 92.7 0.12 3.1E-06 31.1 3.2 27 8-34 23-49 (235)
352 pfam01935 DUF87 Domain of unkn 92.7 0.15 3.7E-06 30.6 3.6 41 10-50 23-67 (218)
353 PRK10895 putative ABC transpor 92.6 0.44 1.1E-05 27.7 6.1 28 8-35 27-54 (241)
354 cd03244 ABCC_MRP_domain2 Domai 92.6 0.11 2.9E-06 31.2 3.1 27 8-34 28-54 (221)
355 PRK09694 hypothetical protein; 92.6 0.15 3.8E-06 30.5 3.7 28 7-34 300-327 (878)
356 cd03301 ABC_MalK_N The N-termi 92.6 0.14 3.5E-06 30.8 3.4 27 8-34 24-50 (213)
357 PRK13643 cbiO cobalt transport 92.6 0.13 3.3E-06 30.9 3.3 27 8-34 30-56 (288)
358 COG1126 GlnQ ABC-type polar am 92.5 0.096 2.4E-06 31.7 2.6 35 8-42 26-62 (240)
359 PRK07952 DNA replication prote 92.5 0.12 3E-06 31.2 3.0 65 10-75 96-170 (242)
360 PRK03333 coaE dephospho-CoA ki 92.5 0.2 5E-06 29.8 4.1 69 11-85 2-70 (394)
361 CHL00181 cbbX CbbX; Provisiona 92.5 0.94 2.4E-05 25.7 7.6 104 11-126 60-177 (287)
362 TIGR02982 heterocyst_DevA ABC 92.5 0.085 2.2E-06 32.0 2.3 77 9-96 30-130 (220)
363 PRK13641 cbiO cobalt transport 92.5 0.13 3.3E-06 30.9 3.2 27 8-34 31-57 (286)
364 PRK13642 cbiO cobalt transport 92.5 0.14 3.5E-06 30.8 3.3 27 8-34 31-57 (277)
365 CHL00176 ftsH cell division pr 92.5 0.16 4.1E-06 30.4 3.6 120 8-132 208-339 (631)
366 PRK13633 cobalt transporter AT 92.5 0.14 3.7E-06 30.6 3.4 40 8-54 35-77 (281)
367 PTZ00202 tuzin; Provisional 92.4 0.47 1.2E-05 27.6 6.0 86 5-115 390-476 (664)
368 cd03278 ABC_SMC_barmotin Barmo 92.4 0.14 3.6E-06 30.7 3.3 24 9-32 21-44 (197)
369 PRK10419 nikE nickel transport 92.4 0.14 3.6E-06 30.7 3.3 51 8-65 36-87 (266)
370 pfam09439 SRPRB Signal recogni 92.4 0.15 3.8E-06 30.6 3.4 26 8-33 1-26 (181)
371 PRK07940 DNA polymerase III su 92.4 0.14 3.5E-06 30.8 3.2 29 9-37 38-66 (395)
372 PRK13637 cbiO cobalt transport 92.3 0.14 3.5E-06 30.8 3.1 44 8-58 31-77 (287)
373 TIGR02397 dnaX_nterm DNA polym 92.3 0.11 2.9E-06 31.3 2.7 60 10-71 36-99 (363)
374 TIGR01193 bacteriocin_ABC ABC- 92.3 0.1 2.6E-06 31.5 2.5 27 8-34 498-524 (710)
375 COG4987 CydC ABC-type transpor 92.3 0.092 2.3E-06 31.8 2.3 26 9-34 363-388 (573)
376 PRK02224 chromosome segregatio 92.3 0.18 4.5E-06 30.1 3.7 26 9-34 22-47 (880)
377 cd03224 ABC_TM1139_LivF_branch 92.3 0.73 1.9E-05 26.4 6.8 27 8-34 24-50 (222)
378 PRK10619 histidine/lysine/argi 92.3 0.16 4E-06 30.4 3.4 25 8-32 29-53 (257)
379 pfam00519 PPV_E1_C Papillomavi 92.3 0.27 7E-06 29.0 4.6 35 7-41 259-293 (432)
380 PRK10733 hflB ATP-dependent me 92.3 0.16 4.2E-06 30.3 3.5 120 8-132 183-314 (644)
381 PRK13649 cbiO cobalt transport 92.2 0.15 3.9E-06 30.5 3.3 27 8-34 31-57 (280)
382 KOG1808 consensus 92.2 0.083 2.1E-06 32.1 1.9 35 5-39 435-469 (1856)
383 PRK11629 lolD lipoprotein tran 92.2 0.16 4.1E-06 30.3 3.4 26 8-33 33-58 (233)
384 PRK08058 DNA polymerase III su 92.2 0.15 3.9E-06 30.5 3.3 29 9-37 27-55 (329)
385 PRK06674 DNA polymerase III su 92.2 0.14 3.7E-06 30.6 3.2 29 9-37 37-65 (563)
386 cd03223 ABCD_peroxisomal_ALDP 92.2 0.14 3.5E-06 30.7 3.1 31 8-38 25-58 (166)
387 KOG3347 consensus 92.2 0.17 4.3E-06 30.2 3.5 48 10-57 7-58 (176)
388 PRK13648 cbiO cobalt transport 92.2 0.17 4.2E-06 30.3 3.4 32 8-39 33-67 (269)
389 PRK05563 DNA polymerase III su 92.2 0.14 3.7E-06 30.6 3.1 30 8-37 36-65 (541)
390 cd03295 ABC_OpuCA_Osmoprotecti 92.1 0.16 4.1E-06 30.3 3.3 32 8-39 25-59 (242)
391 PTZ00243 ABC transporter; Prov 92.1 0.12 3E-06 31.1 2.6 33 8-40 684-719 (1560)
392 cd03256 ABC_PhnC_transporter A 92.1 0.17 4.3E-06 30.3 3.4 27 8-34 25-51 (241)
393 cd03298 ABC_ThiQ_thiamine_tran 92.1 0.17 4.2E-06 30.3 3.4 27 8-34 22-48 (211)
394 COG1100 GTPase SAR1 and relate 92.1 0.93 2.4E-05 25.7 7.2 40 11-50 6-50 (219)
395 cd03261 ABC_Org_Solvent_Resist 92.1 0.17 4.4E-06 30.2 3.4 27 8-34 24-50 (235)
396 PRK11248 tauB taurine transpor 92.1 0.17 4.2E-06 30.3 3.3 27 8-34 25-51 (255)
397 cd03262 ABC_HisP_GlnQ_permease 92.1 0.17 4.4E-06 30.2 3.4 26 8-33 24-49 (213)
398 COG0444 DppD ABC-type dipeptid 92.0 0.28 7.1E-06 28.9 4.4 62 8-73 29-93 (316)
399 KOG0054 consensus 92.0 0.17 4.2E-06 30.3 3.3 22 12-33 1168-1189(1381)
400 PRK10771 thiQ thiamine transpo 92.0 0.18 4.5E-06 30.1 3.4 27 8-34 23-49 (233)
401 pfam04851 ResIII Type III rest 92.0 0.14 3.5E-06 30.7 2.8 36 12-47 20-59 (103)
402 COG4988 CydD ABC-type transpor 92.0 0.2 5.1E-06 29.8 3.6 52 7-58 344-405 (559)
403 cd03229 ABC_Class3 This class 92.0 0.18 4.6E-06 30.1 3.4 27 8-34 24-50 (178)
404 PRK09112 DNA polymerase III su 92.0 0.68 1.7E-05 26.6 6.4 29 8-36 43-71 (352)
405 TIGR00235 udk uridine kinase; 91.9 0.29 7.5E-06 28.8 4.5 86 9-104 9-103 (220)
406 KOG0979 consensus 91.9 0.17 4.4E-06 30.2 3.3 31 7-37 39-69 (1072)
407 cd01126 TraG_VirD4 The TraG/Tr 91.9 0.21 5.3E-06 29.7 3.7 30 13-42 2-32 (384)
408 PRK13652 cbiO cobalt transport 91.9 0.18 4.5E-06 30.1 3.3 32 8-39 28-62 (277)
409 KOG0735 consensus 91.9 0.22 5.6E-06 29.5 3.8 27 9-35 430-456 (952)
410 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.9 0.18 4.6E-06 30.1 3.3 27 8-34 28-54 (218)
411 cd03277 ABC_SMC5_euk Eukaryoti 91.9 0.29 7.3E-06 28.8 4.4 32 6-37 19-50 (213)
412 KOG0731 consensus 91.9 0.17 4.4E-06 30.1 3.2 107 9-120 343-459 (774)
413 PRK08356 hypothetical protein; 91.8 0.29 7.5E-06 28.8 4.4 36 7-43 2-37 (195)
414 cd03292 ABC_FtsE_transporter F 91.8 0.18 4.7E-06 30.0 3.3 32 8-39 25-59 (214)
415 PRK13542 consensus 91.8 0.55 1.4E-05 27.1 5.7 45 8-57 42-87 (224)
416 PRK10851 sulfate/thiosulfate t 91.8 0.19 4.8E-06 29.9 3.4 27 8-34 26-52 (352)
417 TIGR00929 VirB4_CagE type IV s 91.7 0.2 5.2E-06 29.7 3.5 33 13-45 519-558 (931)
418 TIGR03608 L_ocin_972_ABC putat 91.7 0.2 5E-06 29.8 3.4 25 8-32 22-46 (206)
419 cd03237 ABC_RNaseL_inhibitor_d 91.7 0.19 4.8E-06 29.9 3.3 30 9-38 24-56 (246)
420 PRK10751 molybdopterin-guanine 91.7 0.15 3.9E-06 30.5 2.8 27 9-35 1-27 (170)
421 cd03231 ABC_CcmA_heme_exporter 91.7 0.2 5.1E-06 29.8 3.4 32 8-39 24-58 (201)
422 PRK06645 DNA polymerase III su 91.7 0.2 5E-06 29.8 3.3 31 7-37 40-70 (507)
423 PRK11831 putative ABC transpor 91.7 0.19 5E-06 29.8 3.3 27 8-34 32-58 (269)
424 cd03293 ABC_NrtD_SsuB_transpor 91.6 0.2 5.1E-06 29.8 3.3 27 8-34 28-54 (220)
425 cd03225 ABC_cobalt_CbiO_domain 91.6 0.21 5.3E-06 29.7 3.4 27 8-34 25-51 (211)
426 cd03215 ABC_Carb_Monos_II This 91.6 0.23 5.9E-06 29.4 3.6 27 8-34 24-50 (182)
427 cd03226 ABC_cobalt_CbiO_domain 91.5 0.22 5.5E-06 29.6 3.4 32 8-39 24-58 (205)
428 TIGR00958 3a01208 antigen pept 91.5 0.26 6.5E-06 29.1 3.8 26 9-34 558-583 (770)
429 COG4619 ABC-type uncharacteriz 91.5 0.12 3.2E-06 31.0 2.2 47 9-60 28-75 (223)
430 KOG0738 consensus 91.5 0.28 7.1E-06 28.9 4.0 33 11-43 246-278 (491)
431 KOG0079 consensus 91.5 0.069 1.7E-06 32.6 0.9 82 13-94 11-112 (198)
432 cd03233 ABC_PDR_domain1 The pl 91.5 0.2 5.1E-06 29.8 3.2 28 8-35 31-58 (202)
433 PRK11144 modC molybdate transp 91.5 0.22 5.5E-06 29.6 3.4 32 8-39 22-56 (352)
434 cd03258 ABC_MetN_methionine_tr 91.5 0.2 5E-06 29.8 3.2 50 8-66 29-81 (233)
435 cd04155 Arl3 Arl3 subfamily. 91.5 1.2 3.1E-05 25.0 7.3 29 5-33 9-37 (173)
436 PRK08691 DNA polymerase III su 91.5 0.19 4.8E-06 30.0 3.1 28 10-37 38-65 (704)
437 cd04105 SR_beta Signal recogni 91.5 0.59 1.5E-05 26.9 5.6 23 11-33 1-23 (203)
438 PRK11308 dppF dipeptide transp 91.5 0.19 4.9E-06 29.9 3.1 49 8-65 39-90 (327)
439 cd03218 ABC_YhbG The ABC trans 91.4 0.58 1.5E-05 27.0 5.5 72 8-85 24-96 (232)
440 TIGR03600 phage_DnaB phage rep 91.4 0.21 5.2E-06 29.7 3.2 26 9-34 193-218 (421)
441 PRK13808 adenylate kinase; Pro 91.4 0.24 6E-06 29.3 3.5 31 13-43 3-33 (297)
442 TIGR03258 PhnT 2-aminoethylpho 91.4 0.22 5.6E-06 29.5 3.4 27 8-34 29-55 (362)
443 PRK11650 ugpC glycerol-3-phosp 91.4 0.22 5.5E-06 29.6 3.3 26 8-33 28-53 (358)
444 PRK10584 putative ABC transpor 91.4 0.21 5.5E-06 29.6 3.3 27 8-34 34-60 (228)
445 PRK09493 glnQ glutamine ABC tr 91.4 0.22 5.5E-06 29.6 3.3 27 8-34 25-51 (240)
446 PRK06067 flagellar accessory p 91.3 0.25 6.4E-06 29.2 3.6 34 8-41 30-68 (241)
447 PRK07764 DNA polymerase III su 91.3 0.2 5.2E-06 29.7 3.1 28 10-37 37-64 (775)
448 PRK11701 phnK phosphonates tra 91.3 0.22 5.7E-06 29.5 3.3 32 8-39 30-64 (258)
449 COG3596 Predicted GTPase [Gene 91.3 0.23 5.8E-06 29.4 3.3 30 8-37 36-66 (296)
450 TIGR01194 cyc_pep_trnsptr cycl 91.3 0.15 3.9E-06 30.5 2.4 43 9-51 367-418 (555)
451 PRK09536 btuD corrinoid ABC tr 91.3 0.83 2.1E-05 26.0 6.2 27 8-34 26-52 (409)
452 PRK10575 iron-hydroxamate tran 91.2 0.24 6.1E-06 29.3 3.4 31 8-38 35-68 (265)
453 PRK07994 DNA polymerase III su 91.2 0.22 5.6E-06 29.5 3.2 29 9-37 37-65 (643)
454 PRK05917 DNA polymerase III su 91.2 0.23 5.8E-06 29.4 3.3 30 8-37 17-46 (290)
455 pfam01580 FtsK_SpoIIIE FtsK/Sp 91.2 0.89 2.3E-05 25.9 6.3 73 10-95 38-117 (202)
456 KOG2170 consensus 91.2 0.33 8.3E-06 28.5 4.1 68 7-96 107-174 (344)
457 COG2262 HflX GTPases [General 91.1 0.53 1.4E-05 27.2 5.1 89 7-97 189-302 (411)
458 KOG0953 consensus 91.1 0.19 4.8E-06 29.9 2.8 35 8-42 189-243 (700)
459 cd03232 ABC_PDR_domain2 The pl 91.1 0.22 5.6E-06 29.5 3.1 27 8-34 31-57 (192)
460 COG3839 MalK ABC-type sugar tr 91.1 0.24 6.2E-06 29.3 3.3 25 8-32 27-51 (338)
461 PRK11247 ssuB aliphatic sulfon 91.1 0.24 6.1E-06 29.3 3.3 32 8-39 36-70 (257)
462 COG0541 Ffh Signal recognition 91.0 1.2 3.2E-05 25.0 6.9 46 7-63 97-147 (451)
463 PRK10908 cell division protein 91.0 0.24 6.2E-06 29.3 3.3 27 8-34 26-52 (222)
464 PRK10416 cell division protein 91.0 1.3 3.4E-05 24.8 7.1 37 7-43 292-333 (499)
465 KOG3079 consensus 91.0 0.36 9.3E-06 28.2 4.2 37 6-42 4-40 (195)
466 cd03217 ABC_FeS_Assembly ABC-t 91.0 0.24 6.1E-06 29.3 3.2 26 8-33 24-49 (200)
467 PRK11000 maltose/maltodextrin 91.0 0.25 6.4E-06 29.2 3.3 27 8-34 27-53 (369)
468 COG1061 SSL2 DNA or RNA helica 91.0 0.29 7.4E-06 28.8 3.6 28 10-37 55-82 (442)
469 PRK08769 DNA polymerase III su 91.0 0.24 6E-06 29.3 3.2 30 8-37 24-53 (319)
470 PTZ00265 multidrug resistance 91.0 0.29 7.3E-06 28.8 3.6 26 10-35 1195-1220(1467)
471 PRK11432 fbpC ferric transport 91.0 0.25 6.3E-06 29.2 3.2 26 8-33 30-55 (351)
472 PRK00080 ruvB Holliday junctio 90.9 0.23 5.8E-06 29.4 3.1 29 12-40 53-81 (328)
473 cd03116 MobB Molybdenum is an 90.9 0.18 4.5E-06 30.1 2.5 36 10-56 1-36 (159)
474 cd00550 ArsA_ATPase Oxyanion-t 90.9 0.33 8.3E-06 28.5 3.8 33 11-43 1-38 (254)
475 COG1643 HrpA HrpA-like helicas 90.9 0.15 3.7E-06 30.6 2.0 38 8-45 63-104 (845)
476 COG1072 CoaA Panthothenate kin 90.8 0.84 2.1E-05 26.0 5.9 74 7-93 79-159 (283)
477 TIGR03410 urea_trans_UrtE urea 90.8 0.95 2.4E-05 25.7 6.1 53 8-65 24-77 (230)
478 PRK05748 replicative DNA helic 90.7 0.27 6.9E-06 29.0 3.3 26 9-34 202-227 (448)
479 KOG0739 consensus 90.7 0.36 9.1E-06 28.3 3.9 38 10-47 166-206 (439)
480 pfam01591 6PF2K 6-phosphofruct 90.7 1.6 4E-05 24.4 8.2 89 7-115 10-103 (223)
481 PRK13540 cytochrome c biogenes 90.7 0.29 7.5E-06 28.8 3.5 40 8-54 25-67 (200)
482 cd00267 ABC_ATPase ABC (ATP-bi 90.7 0.29 7.4E-06 28.8 3.4 27 8-34 23-49 (157)
483 TIGR02203 MsbA_lipidA lipid A 90.7 0.19 4.8E-06 30.0 2.4 28 7-34 385-412 (603)
484 TIGR02324 CP_lyasePhnL phospho 90.6 0.14 3.7E-06 30.6 1.8 61 9-74 33-96 (224)
485 TIGR03265 PhnT2 putative 2-ami 90.6 0.29 7.3E-06 28.8 3.3 26 8-33 28-53 (353)
486 COG4240 Predicted kinase [Gene 90.6 0.28 7E-06 28.9 3.2 34 9-42 49-88 (300)
487 TIGR03375 type_I_sec_LssB type 90.5 0.24 6.2E-06 29.3 2.9 26 9-34 490-515 (694)
488 TIGR02528 EutP ethanolamine ut 90.5 0.16 4E-06 30.4 1.9 20 12-31 2-21 (144)
489 PRK11124 artP arginine transpo 90.4 0.32 8.1E-06 28.5 3.4 25 8-32 26-50 (242)
490 CHL00175 minD septum-site dete 90.4 1.1 2.8E-05 25.3 6.2 40 3-42 6-51 (279)
491 cd01124 KaiC KaiC is a circadi 90.4 0.23 5.8E-06 29.4 2.7 36 13-48 2-44 (187)
492 COG3451 VirB4 Type IV secretor 90.4 0.29 7.5E-06 28.8 3.2 40 9-48 435-478 (796)
493 cd01394 radB RadB. The archaea 90.4 0.54 1.4E-05 27.2 4.6 35 9-43 18-55 (218)
494 COG2255 RuvB Holliday junction 90.3 0.3 7.6E-06 28.7 3.2 29 12-40 54-82 (332)
495 PRK06761 hypothetical protein; 90.3 0.64 1.6E-05 26.7 4.9 39 9-50 1-39 (281)
496 PRK09473 oppD oligopeptide tra 90.3 0.28 7.2E-06 28.9 3.1 55 8-66 40-95 (330)
497 PRK09452 potA putrescine/sperm 90.2 0.33 8.4E-06 28.5 3.4 27 8-34 41-67 (378)
498 COG1117 PstB ABC-type phosphat 90.2 0.41 1.1E-05 27.9 3.9 57 8-64 31-88 (253)
499 PRK11131 ATP-dependent RNA hel 90.2 0.18 4.6E-06 30.1 2.0 24 8-31 87-110 (1295)
500 COG1116 TauB ABC-type nitrate/ 90.2 0.35 8.9E-06 28.3 3.4 26 8-33 27-52 (248)
No 1
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=302.32 Aligned_cols=113 Identities=35% Similarity=0.507 Sum_probs=109.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHH
Q ss_conf 89849999879873344999999988198797500442116822242346768742340433144513765589999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRY 87 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~ 87 (133)
.++++++|+||||||||+||++||+++|+||||+|||||||||||||||||.+|+.++||||+|+++|.|.|||++|.++
T Consensus 1 ~~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~ 80 (308)
T COG0324 1 KKPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD 80 (308)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 99637999898875778999999998299289302355318886307999999985899787545683225549999999
Q ss_pred HHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCCCC
Q ss_conf 9999999984100000133259855998893089999841843
Q 537021.9.peg.8 88 AIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCNKR 130 (133)
Q Consensus 88 a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~~~ 130 (133)
|.+.|+++.+ ||++||+|||||||++||+++..
T Consensus 81 a~~~i~~i~~----------rgk~pIlVGGTglY~~aL~~g~~ 113 (308)
T COG0324 81 ALAAIDDILA----------RGKLPILVGGTGLYLKALLEGLS 113 (308)
T ss_pred HHHHHHHHHH----------CCCCCEEECCHHHHHHHHHCCCC
T ss_conf 9999999996----------89987997667999999973876
No 2
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=0 Score=301.74 Aligned_cols=113 Identities=33% Similarity=0.529 Sum_probs=108.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHH
Q ss_conf 89849999879873344999999988198797500442116822242346768742340433144513765589999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRY 87 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~ 87 (133)
.++|+|+|+||||||||+||++||+++++||||||||||||||+|||||||.+|+.++||||+|+++|+|+|||++|+++
T Consensus 2 ~~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~~~~~e~~sv~~f~~~ 81 (304)
T PRK00091 2 MKPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDILDPTESYSAADFQRD 81 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEEECCCCCEEHHHHHHH
T ss_conf 99977999898865899999999998799899412688749998688999999981898124345658875449999999
Q ss_pred HHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCCCC
Q ss_conf 9999999984100000133259855998893089999841843
Q 537021.9.peg.8 88 AIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCNKR 130 (133)
Q Consensus 88 a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~~~ 130 (133)
|.++|+++++ ++++||+|||||||++||+.+-.
T Consensus 82 a~~~i~~i~~----------~~kiPIiVGGTglYl~aLl~g~~ 114 (304)
T PRK00091 82 ALAAIEDITA----------RGKLPILVGGTGLYFKALLEGLS 114 (304)
T ss_pred HHHHHHHHHH----------CCCCCEEECCCHHHHHHHHCCCC
T ss_conf 9999999997----------69987898083899999971877
No 3
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=100.00 E-value=0 Score=303.11 Aligned_cols=109 Identities=36% Similarity=0.503 Sum_probs=105.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHH
Q ss_conf 99998798733449999999881987975004421168222423467687423404331445137655899999999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKK 91 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~ 91 (133)
+|+|+||||||||+||++||+++|+||||+||+||||||||||||||.+||..||||++|++||+|+|++++|++.|.+.
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~~~~~~~ 80 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQTQALNA 80 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 96774088554778999988768957874350232237875357889687534981585134712003708899999999
Q ss_pred HHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCCCC
Q ss_conf 999984100000133259855998893089999841843
Q 537021.9.peg.8 92 IAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCNKR 130 (133)
Q Consensus 92 i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~~~ 130 (133)
|+++++ ||++|+|||||+||+++|+.+..
T Consensus 81 ~~~i~~----------~Gkipl~VGGT~lY~k~l~~gl~ 109 (307)
T TIGR00174 81 IADITA----------RGKIPLLVGGTGLYLKALLEGLS 109 (307)
T ss_pred HHHHHH----------CCCCEEEECCHHHHHHHHHHCCC
T ss_conf 999985----------69834886857889999971477
No 4
>KOG1384 consensus
Probab=100.00 E-value=7.4e-39 Score=255.89 Aligned_cols=115 Identities=31% Similarity=0.503 Sum_probs=110.2
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHH
Q ss_conf 00589849999879873344999999988198797500442116822242346768742340433144513765589999
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKW 84 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f 84 (133)
.++++.|+++|+||||||||.||++||.+|++||||+|+||||+|++|+|+|++.+|+.+|||||+++++|.++|++++|
T Consensus 2 ~~~~k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F 81 (348)
T KOG1384 2 KKKSKDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEF 81 (348)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCCCCHHHHCCHHHH
T ss_conf 98877359999557777704667888975786465156335632766201668755407987677076886764269999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCCC
Q ss_conf 999999999998410000013325985599889308999984184
Q 537021.9.peg.8 85 LRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCNK 129 (133)
Q Consensus 85 ~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~~ 129 (133)
.++|...|++|++ ||++||+||||++|+++|+.+.
T Consensus 82 ~~~a~~aie~I~~----------rgk~PIv~GGs~~yi~al~~~~ 116 (348)
T KOG1384 82 EDDASRAIEEIHS----------RGKLPIVVGGSNSYLQALLSKR 116 (348)
T ss_pred HHHHHHHHHHHHH----------CCCCCEEECCCHHHHHHHHHCC
T ss_conf 9999999999985----------7997779678406689996068
No 5
>pfam01715 IPPT IPP transferase. This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37).
Probab=99.95 E-value=7.9e-28 Score=189.28 Aligned_cols=76 Identities=29% Similarity=0.429 Sum_probs=73.2
Q ss_pred HHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHH
Q ss_conf 42116822242346768742340433144513765589999999999999998410000013325985599889308999
Q 537021.9.peg.8 44 MQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYAR 123 (133)
Q Consensus 44 ~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~ 123 (133)
|||||||||||||||.+|+.+|||||+|+++|+|+|||++|+++|.++|+++++ +|++||+|||||||++
T Consensus 1 mQvYk~l~IgTaKps~~e~~~ipHhlid~~~~~e~~sv~~f~~~a~~~i~~i~~----------~~k~PIiVGGTglYl~ 70 (253)
T pfam01715 1 MQVYKGMDIGTAKPSLEERKGVPHHLIDILDPTESYSAAEFQRDALEAIAEIRA----------RGKIPLLVGGTGLYFK 70 (253)
T ss_pred CCCCCCCCEEECCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH----------CCCCCEEEECCHHHHH
T ss_conf 973799910669999999918997545566899876199999999999999996----------6997289838089999
Q ss_pred HHHCCC
Q ss_conf 984184
Q 537021.9.peg.8 124 NTYCNK 129 (133)
Q Consensus 124 al~~~~ 129 (133)
||+.+-
T Consensus 71 all~g~ 76 (253)
T pfam01715 71 ALLDGL 76 (253)
T ss_pred HHHCCC
T ss_conf 997698
No 6
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=99.87 E-value=5.8e-22 Score=153.83 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=89.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCC-CCCHHHHHHHHH
Q ss_conf 4999987987334499999998819879750044211682224234676874234043314451376-558999999999
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQK-SYSTGKWLRYAI 89 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e-~~sv~~f~~~a~ 89 (133)
++.+|+||||+|||++|++||+++++||||+||+|||++|+|||+||+++|+.+...-.++.....| .+++.+-.+...
T Consensus 2 ~l~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~El~gT~RiYL~~R~l~~Gii~a~eA~~~Li 81 (232)
T pfam01745 2 GLYLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPAELQGTRRIYLDNRPLSEGIIDAEEAHDRLI 81 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 26899788777716999999999599779620344300113677899979965752698616734346648899999999
Q ss_pred HHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCC
Q ss_conf 999999841000001332598559988930899998418
Q 537021.9.peg.8 90 KKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCN 128 (133)
Q Consensus 90 ~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~ 128 (133)
..+. +. -. ..-.|+.|||-.-++.+...
T Consensus 82 ~~V~---~~-------~~-~~glILEGGSISLl~~ma~~ 109 (232)
T pfam01745 82 AEVT---SH-------KD-EGGVILEGGSISLLKRMAQS 109 (232)
T ss_pred HHHH---CC-------CC-CCCEEEECCHHHHHHHHHHC
T ss_conf 9996---04-------66-78668727509999999757
No 7
>PRK05480 uridine kinase; Provisional
Probab=98.19 E-value=6.1e-06 Score=57.07 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=52.4
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCC---EEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCH
Q ss_conf 00589849999879873344999999988198---797500442116822242346768742340433144513765589
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNG---AIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYST 81 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~---~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv 81 (133)
||..+|-+|.|+|+.|||||.+|-.|++.++. .+||.|+. |+... .-+.+|+... ++-+ .+.++.
T Consensus 1 ~~~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Y--y~~~~----~~~~~e~~~~-----nfD~-P~a~d~ 68 (209)
T PRK05480 1 MMMKQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSY--YKDQS----HLSMEERVKT-----NYDH-PDAFDH 68 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCC--CCCCC----CCCHHHHCCC-----CCCC-CHHHHH
T ss_conf 9988988999989997789999999999808687599955441--24734----0788681236-----8788-267669
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 537021.9.peg.8 82 GKWLRYAIKKIA 93 (133)
Q Consensus 82 ~~f~~~a~~~i~ 93 (133)
..+.+...++..
T Consensus 69 ~ll~~~L~~L~~ 80 (209)
T PRK05480 69 DLLIEHLKALKA 80 (209)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999974
No 8
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.15 E-value=1.7e-06 Score=60.36 Aligned_cols=115 Identities=20% Similarity=0.149 Sum_probs=71.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCC-------------CCHHHHCCCEEEECCEECC---
Q ss_conf 999987987334499999998819879750044211682224234-------------6768742340433144513---
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSR-------------PSDQDMQSIPHYLYGYVPA--- 75 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaK-------------ps~~e~~~v~H~lid~~~~--- 75 (133)
=|+++||||||||=||-.||+.++.++==||+--.-.-=-+|=+= -..+-++|| =+||.+|-
T Consensus 154 NILLiGPTGSGKTLLAqTLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGI--iYIDEIDKIaR 231 (452)
T TIGR00382 154 NILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGI--IYIDEIDKIAR 231 (452)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCE--EEEECCCCHHH
T ss_conf 6245468885268999999987388742111110200664242288999999874145524527850--89842231012
Q ss_pred -CCCCCHH------HHHHHHHHHHHHHHHHHCHHHHH---------HHCCCEEEEECCCHHHHHHHHCC
Q ss_conf -7655899------99999999999998410000013---------32598559988930899998418
Q 537021.9.peg.8 76 -QKSYSTG------KWLRYAIKKIAEVQKTVFTYNSR---------WDRSLFSCINRSTLYYARNTYCN 128 (133)
Q Consensus 76 -~e~~sv~------~f~~~a~~~i~~i~~~~~~~~~~---------~~r~~~piivGGTglY~~al~~~ 128 (133)
+|+-|.- -=++...++||.--+++|...++ .+=..+.+||||.--=++-++.+
T Consensus 232 kSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~ 300 (452)
T TIGR00382 232 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKK 300 (452)
T ss_pred HCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHH
T ss_conf 157780112217554999999876032343175448868865768864764001105434448999988
No 9
>PRK08233 hypothetical protein; Provisional
Probab=97.97 E-value=3.2e-05 Score=52.67 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHHHH
Q ss_conf 89849999879873344999999988198-7975004421
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSMQV 46 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~Qv 46 (133)
.++.+|.|+|.||||||.||-.|.++++. .+++.|+...
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l~~~~~~~~D~y~~ 40 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDF 40 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9988999968886789999999999746775899666555
No 10
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.94 E-value=7.2e-05 Score=50.56 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEECCH-HHHHCCCCCCCCC-CCHHHHCCCEEEECCEECCCCCCCHHH
Q ss_conf 58984999987987334499999998819-87975004-4211682224234-676874234043314451376558999
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN-GAIINADS-MQVYDTLRILTSR-PSDQDMQSIPHYLYGYVPAQKSYSTGK 83 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~-~~IIs~DS-~QvYk~l~IgTaK-ps~~e~~~v~H~lid~~~~~e~~sv~~ 83 (133)
+..|-+|+|.|++|+|||.||..||.++| .-+||-|+ ++|-|.+ +.-.. |+--.-.=-.+..+..-.+.++--+..
T Consensus 89 ~~~pliILigGtsGvGKSTlA~~LA~rLgI~~visTD~IREVmR~~-~~~el~P~Lh~SSy~Awk~l~~~~~~~~~~I~G 167 (306)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKI-ISKELLPTLHESSYTAWKSLRRPPWEEPDHILG 167 (306)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHC-CCCCCCCHHHCCCHHHHHCCCCCCCCCHHHHHH
T ss_conf 6998799985899887899999999970988342221699999852-483017513227513100236787786579999
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHH
Q ss_conf 9999999999998410000013325985599889308
Q 537021.9.peg.8 84 WLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLY 120 (133)
Q Consensus 84 f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTgl 120 (133)
|.+.|......+.+-. -.+.+....+|+-|.++
T Consensus 168 f~~Q~~~V~~gI~aiI----~Ra~~eg~slIIEGVHl 200 (306)
T PRK04220 168 FERHVEPVLVGVEAVI----ERALKEGISVIIEGVHI 200 (306)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHCCCCEEEEEECC
T ss_conf 9999999999999999----99997299689984303
No 11
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.94 E-value=3.9e-06 Score=58.22 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=62.2
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHH
Q ss_conf 00589849999879873344999999988198797500442116822242346768742340433144513765589999
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKW 84 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f 84 (133)
+|..+.++++|+||.|+||+.|.-.|.+.++..+- .-....|-+|-+.|..++.||+++--+-.+....+.|
T Consensus 2 ~~~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~--------~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~F 73 (208)
T PRK00300 2 MMMRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQ--------LSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEF 73 (208)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE--------EEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCC
T ss_conf 62418838999999988999999999972998689--------9897468898998778965799619999999862836
Q ss_pred HHH----------HHHHHHHHHHHHCHHHHHHHCCCEEEEE
Q ss_conf 999----------9999999984100000133259855998
Q 537021.9.peg.8 85 LRY----------AIKKIAEVQKTVFTYNSRWDRSLFSCIN 115 (133)
Q Consensus 85 ~~~----------a~~~i~~i~~~~~~~~~~~~r~~~piiv 115 (133)
.+. ..+.++++ +.+|+.+++-
T Consensus 74 lE~~~~~g~~YGT~~~~I~~~----------~~~G~~vild 104 (208)
T PRK00300 74 LEWAEVFGNYYGTPREPVEEA----------LAAGKDVLLE 104 (208)
T ss_pred EEEEEECCCCEECCHHHHHHH----------HHCCCCEEEE
T ss_conf 678998387035246999999----------8569987974
No 12
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=97.80 E-value=6.1e-05 Score=51.02 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHH
Q ss_conf 84999987987334499999998819879750044211682224234676874234043314451376558999999999
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAI 89 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~ 89 (133)
.|+|+|+||.|+||+.|.-.|.+.++...- .-..-.|-+|-+.|..+..||+++--.-.+....+.|.+...
T Consensus 1 ~klivl~GPSG~GK~tl~~~L~~~~~~~~~--------~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~ 72 (182)
T pfam00625 1 RRPIVLSGPSGVGKSHIKKALLDEYPEKFG--------YSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAE 72 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEE--------EEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 986999898999999999999984866734--------457655479998787896579965899999875437776264
Q ss_pred H-------HHHHHHHHHCHHHHHHHCCCEEEEECC
Q ss_conf 9-------999998410000013325985599889
Q 537021.9.peg.8 90 K-------KIAEVQKTVFTYNSRWDRSLFSCINRS 117 (133)
Q Consensus 90 ~-------~i~~i~~~~~~~~~~~~r~~~piivGG 117 (133)
. ..+++ ...++.|+.+++..-
T Consensus 73 ~~g~~YGt~~~~I-------~~~~~~g~~vvl~id 100 (182)
T pfam00625 73 FNGNYYGTSKEAI-------EQIAESGKICILDVD 100 (182)
T ss_pred HCCCCEEECHHHH-------HHHHHCCCEEEEEEC
T ss_conf 0797256402777-------999867996999972
No 13
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=97.73 E-value=3.2e-05 Score=52.70 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH
Q ss_conf 98499998798733449999999881987975004421
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV 46 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv 46 (133)
.|+=|+++||||||||.+|=.||+-.+++.+-+|+-..
T Consensus 49 ~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~ 86 (442)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (442)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 64316887888866789999999984898587521310
No 14
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.65 E-value=4.8e-05 Score=51.64 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=69.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHC----CCCCCC-------CCCCHHHHCCCEEEECCEECC---
Q ss_conf 849999879873344999999988198797500442116----822242-------346768742340433144513---
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYD----TLRILT-------SRPSDQDMQSIPHYLYGYVPA--- 75 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk----~l~IgT-------aKps~~e~~~v~H~lid~~~~--- 75 (133)
+.=|+++||||||||.||-.||+.++.+.+-+|+-.+-. |=|+=+ +.--.-|+++.---++|.+|-
T Consensus 109 KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIar 188 (411)
T PRK05342 109 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 188 (411)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHH
T ss_conf 45389989999778899999999869998998612001267456079999999999828889988368288850234542
Q ss_pred -CC------CCCHHHHHHHHHHHHHHHHHHHCHHHH---------HHHCCCEEEEECCCHHHHHHHHCC
Q ss_conf -76------558999999999999999841000001---------332598559988930899998418
Q 537021.9.peg.8 76 -QK------SYSTGKWLRYAIKKIAEVQKTVFTYNS---------RWDRSLFSCINRSTLYYARNTYCN 128 (133)
Q Consensus 76 -~e------~~sv~~f~~~a~~~i~~i~~~~~~~~~---------~~~r~~~piivGGTglY~~al~~~ 128 (133)
++ ..|-.--++...++++.-..+++.... ..+-..+.+|+||.--=++-++..
T Consensus 189 ks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~ 257 (411)
T PRK05342 189 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQ 257 (411)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHH
T ss_conf 478888877765124899999987587141188877778776516761471799911553358999986
No 15
>PRK08118 topology modulation protein; Reviewed
Probab=97.62 E-value=5.6e-05 Score=51.23 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=31.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH
Q ss_conf 499998798733449999999881987975004421
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV 46 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv 46 (133)
+-|.|+|+.|||||.||-.|++.++.+.+..|+..-
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 679998899987999999999988969796443476
No 16
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.61 E-value=6.4e-05 Score=50.90 Aligned_cols=37 Identities=35% Similarity=0.492 Sum_probs=32.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCCC
Q ss_conf 999987987334499999998819---879750044211682
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDTL 50 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~l 50 (133)
+|.|+|++|||||.+|-.|++.++ ..+||.|+. |+..
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~y--y~~~ 40 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY--YKDL 40 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCC
T ss_conf 989889998859999999999809998589978888--8798
No 17
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.61 E-value=7.7e-05 Score=50.39 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHH
Q ss_conf 5898499998798733449999999881-------9879750044
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF-------NGAIINADSM 44 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~ 44 (133)
..++++++++||||+|||.....||-++ +..+|++|..
T Consensus 191 ~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~Dty 235 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTY 235 (282)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 456727999778887578899999999999738996799980777
No 18
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.60 E-value=5.9e-05 Score=51.08 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=53.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 99998798733449999999881-----9879750044211682224234676874234043314451376558999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
+|.|+||+|||||.+|-.|++.+ +..+||.|+. |+... .|..+ . .++-+| +.++...+.+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~y--y~~~~----~~~~~---~-----~n~D~p-~a~d~~ll~~ 65 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY--YVPRK----TPRDE---D-----GNYDFE-SILDLDLLNK 65 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCCC----CCCCC---C-----CCCCCH-HHHHHHHHHH
T ss_conf 98998989778999999999998464885399954666--45765----20001---4-----688981-3534999999
Q ss_pred HHHHHHHHHHHHHCHHHHHH----------HCCCEEEEECCCHHH
Q ss_conf 99999999984100000133----------259855998893089
Q 537021.9.peg.8 87 YAIKKIAEVQKTVFTYNSRW----------DRSLFSCINRSTLYY 121 (133)
Q Consensus 87 ~a~~~i~~i~~~~~~~~~~~----------~r~~~piivGGTglY 121 (133)
...++...-....+.++..- ......||+-|....
T Consensus 66 ~L~~L~~g~~v~~P~YDf~t~~r~~~~~~~~~p~~vIIvEGi~~l 110 (179)
T cd02028 66 NLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYAL 110 (179)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECHHHC
T ss_conf 999997799557542004378606980596089978999243438
No 19
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.58 E-value=8.2e-05 Score=50.25 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=37.7
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 100589849999879873344999999988198797500442
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQ 45 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Q 45 (133)
..-++++.+|+++|+.|||||.++-.||++++.+-+-+|...
T Consensus 2 ~~~~~~~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDdfH 43 (177)
T PRK11545 2 STTNHDHHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLH 43 (177)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 656788759999847989999999999998199855365558
No 20
>PRK13948 shikimate kinase; Provisional
Probab=97.55 E-value=0.00021 Score=47.74 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=57.9
Q ss_pred CCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCC
Q ss_conf 92110058984999987987334499999998819879750044211682224234676874234043314451376558
Q 537021.9.peg.8 1 MMMMFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYS 80 (133)
Q Consensus 1 ~~~~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~s 80 (133)
|-.|-+....+.|+++|.-|||||.++-.||++++.+-+..|..= |+ ++...+-+.-+.+-
T Consensus 1 ~~~~~~p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~I--------------e~-----~~g~sI~eIF~~~G 61 (182)
T PRK13948 1 MARLEVPRPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKLI--------------TR-----VVGKSIPEVFAQEG 61 (182)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH--------------HH-----HHCCCHHHHHHHHC
T ss_conf 986657999981898899999889999999999695988884999--------------99-----88939999999848
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999984
Q 537021.9.peg.8 81 TGKWLRYAIKKIAEVQK 97 (133)
Q Consensus 81 v~~f~~~a~~~i~~i~~ 97 (133)
-..|++.-.+.+.++..
T Consensus 62 E~~FR~~E~~~l~~l~~ 78 (182)
T PRK13948 62 EEYFRACEKEVVRRVTR 78 (182)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999974
No 21
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.55 E-value=8.2e-05 Score=50.23 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=47.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHH
Q ss_conf 999987987334499999998819-8797500442116822242346768742340433144513765589999999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN-GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIK 90 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~-~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~ 90 (133)
||.|+|+||||||.||-.|.+.++ ..||+-|+ .|+..+ ..+.+++. .+| .|..+.++-..|.+....
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~~~iI~qDd--yYk~~~----~~~~~~~~-----~~N-fDhP~AiD~~~l~~~L~~ 68 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDD--FFKPED----EIPVDENG-----FKQ-WDVLEALDMEAMMSTLDY 68 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEECCCC--CCCCCC----CCCHHHCC-----CCC-CCCCCCCCHHHHHHHHHH
T ss_conf 989968888759999999999879988971544--678843----27621305-----768-767012058999999999
Q ss_pred HHH
Q ss_conf 999
Q 537021.9.peg.8 91 KIA 93 (133)
Q Consensus 91 ~i~ 93 (133)
+.+
T Consensus 69 l~~ 71 (187)
T cd02024 69 WRE 71 (187)
T ss_pred HHH
T ss_conf 994
No 22
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=97.52 E-value=0.00023 Score=47.55 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-------CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCC
Q ss_conf 8984999987987334499999998819-------879750044211682224234676874234043314451376558
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-------GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYS 80 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-------~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~s 80 (133)
.++.+|.|+||+|||||.+|-.|++.++ ..+++.|....++.- ..++ .+.+.....+.|+
T Consensus 32 ~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~~~~~--L~~~-----------~~~~rkGaP~TFD 98 (230)
T PRK09270 32 QRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHLDNAV--LDAR-----------GLRARKGAPETFD 98 (230)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH--HHHC-----------CCCCCCCCCCCCC
T ss_conf 97189999899988999999999999862379985799736533457255--5435-----------4743379910216
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q 537021.9.peg.8 81 TGKWLRYAIKKIA 93 (133)
Q Consensus 81 v~~f~~~a~~~i~ 93 (133)
+..|.+....+..
T Consensus 99 ~~~l~~~L~~Lk~ 111 (230)
T PRK09270 99 VAGLAELLRRLRE 111 (230)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9889999999856
No 23
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00042 Score=45.92 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE---EEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHH
Q ss_conf 98499998798733449999999881987---975004421168222423467687423404331445137655899999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA---IINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWL 85 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~---IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~ 85 (133)
+..+|.|+|+.|||||.+|-.|...|+.+ +|+.|+. |+ ...+.+.+|+..+. .+..+.|+.-.|.
T Consensus 7 ~~iiIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~Y--Yk----~~~~~~~~~~~~~n------~d~p~A~D~dLl~ 74 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YK----DQSHLPFEERNKIN------YDHPEAFDLDLLI 74 (218)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCC--CC----CHHHCCHHHCCCCC------CCCHHHHCHHHHH
T ss_conf 669999867987788999999999828675247652232--02----53016675537857------4482343689999
Q ss_pred HHHHHHHHHHHHHHCHHHH----------HHHCCCEEEEECCCHHHH
Q ss_conf 9999999999841000001----------332598559988930899
Q 537021.9.peg.8 86 RYAIKKIAEVQKTVFTYNS----------RWDRSLFSCINRSTLYYA 122 (133)
Q Consensus 86 ~~a~~~i~~i~~~~~~~~~----------~~~r~~~piivGGTglY~ 122 (133)
+....+.+.-....|.++. ....+.+.|+.|==+||=
T Consensus 75 ~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VIIvEGi~~l~d 121 (218)
T COG0572 75 EHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD 121 (218)
T ss_pred HHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 99999976992245642031363257733138972899942300150
No 24
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.50 E-value=6.2e-05 Score=50.98 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 98499998798733449999999881987975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
+.|+++++||.|+||+.|.-.|.+.++... +.-..-.|-.|-+.|..+..||+++--+-.+....+.|.+..
T Consensus 1 ~~r~iil~Gpsg~GK~tl~~~l~~~~~~~~--------~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~ 72 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAF--------ERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWG 72 (184)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCE--------EEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHH
T ss_conf 997799999999999999999986396450--------577876727998899999636997179999998727417888
Q ss_pred HH-------HHHHHHHHHCHHHHHHHCCCEEEEECCC
Q ss_conf 99-------9999984100000133259855998893
Q 537021.9.peg.8 89 IK-------KIAEVQKTVFTYNSRWDRSLFSCINRST 118 (133)
Q Consensus 89 ~~-------~i~~i~~~~~~~~~~~~r~~~piivGGT 118 (133)
.. ..+++. ...+.|+.+++..-.
T Consensus 73 ~~~g~~YGt~~~~I~-------~~~~~g~~~ildi~~ 102 (184)
T smart00072 73 EYSGNYYGTSKETIR-------QVAEQGKHCLLDIDP 102 (184)
T ss_pred HHCCCCCCCHHHHHH-------HHHCCCCEEEEEECH
T ss_conf 747877541067899-------987269869999629
No 25
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.50 E-value=0.00014 Score=48.79 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHH-HHHCCCCCCCCCCCHHHHCCCEEEECCE-ECCCCCCCHHHHH
Q ss_conf 9849999879873344999999988198-79750044-2116822242346768742340433144-5137655899999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSM-QVYDTLRILTSRPSDQDMQSIPHYLYGY-VPAQKSYSTGKWL 85 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~-QvYk~l~IgTaKps~~e~~~v~H~lid~-~~~~e~~sv~~f~ 85 (133)
++.+++|.|++|+|||.+|..||.++|. -+||-|+. ++-|.+- +..|.--. .-|.-... -+|.++--+..|.
T Consensus 2 ~~~iiligG~sGvGKStla~~lA~rlgi~~visTD~IRevlR~~i--~~eP~L~~---Ssy~A~~~~~~~~~~~ii~Gf~ 76 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYV--DDEPVLAK---SVYDAWEFYGSMTDENIVKGYL 76 (197)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHC--CCCCCHHH---HHHHHHHHCCCCCHHHHHHHHH
T ss_conf 747999857998878999999999749975534347999999866--88740033---0467988708965278999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHH
Q ss_conf 99999999998410000013325985599889308
Q 537021.9.peg.8 86 RYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLY 120 (133)
Q Consensus 86 ~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTgl 120 (133)
+.+......+.+-. -++.+....+++-|.++
T Consensus 77 ~q~~~V~~gi~avi----~Ra~~eg~slIIEGVHl 107 (197)
T PRK12339 77 DQARAIMPGINRVI----RRALLNGEDLVIESLYF 107 (197)
T ss_pred HHHHHHHHHHHHHH----HHHHHCCCCEEEEEEEE
T ss_conf 99999999999999----99997399779985211
No 26
>KOG3308 consensus
Probab=97.49 E-value=0.0005 Score=45.51 Aligned_cols=75 Identities=24% Similarity=0.253 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 8984999987987334499999998819-879750044211682224234676874234043314451376558999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
.+.-++.|.|.|.||||.||-.|++.|+ +.+|+-| -.| ||..|- .+..+.++-++..|+.+-..|.+
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqD--DFy--------Kp~~Ei--~v~~~n~~~wd~~esLdm~~fl~ 69 (225)
T KOG3308 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQD--DFY--------KPENEI--EVDYNNIDNWDLLESLDMEKFLE 69 (225)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCC--CCC--------CCHHHH--HCCCCCCCHHCCHHHHHHHHHHH
T ss_conf 618999864246787768999999873687464022--346--------755342--11237721110131420999987
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 537021.9.peg.8 87 YAIKKIAE 94 (133)
Q Consensus 87 ~a~~~i~~ 94 (133)
....++..
T Consensus 70 ~ia~~l~~ 77 (225)
T KOG3308 70 KIATWLDS 77 (225)
T ss_pred HHHHHHCC
T ss_conf 88888507
No 27
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00012 Score=49.33 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=74.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCC-----------CCCHHHHCCCEEEECCEEC----
Q ss_conf 8499998798733449999999881987975004421168222423-----------4676874234043314451----
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTS-----------RPSDQDMQSIPHYLYGYVP---- 74 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTa-----------Kps~~e~~~v~H~lid~~~---- 74 (133)
+.=|+++||||||||-||-.||+.++.+.-=+|+-+.-.-=-+|-+ .--.-++++----.+|.+|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHC
T ss_conf 03179988899757799999999848984751444121066355008999999998764588888288599851025420
Q ss_pred CCC------CCCHHHHHHHHHHHHHHHHHHHCHHHH---------HHHCCCEEEEECCCHHHHHHHHCCC
Q ss_conf 376------558999999999999999841000001---------3325985599889308999984184
Q 537021.9.peg.8 75 AQK------SYSTGKWLRYAIKKIAEVQKTVFTYNS---------RWDRSLFSCINRSTLYYARNTYCNK 129 (133)
Q Consensus 75 ~~e------~~sv~~f~~~a~~~i~~i~~~~~~~~~---------~~~r~~~piivGGTglY~~al~~~~ 129 (133)
.+| ..|-.--++...++|+.--+..|.... ..+-..+.++|||.--=++-++.+.
T Consensus 177 kSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R 246 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKR 246 (408)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 5789872343673589999999970751023999888798420488737634678244010399999986
No 28
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.47 E-value=8.5e-05 Score=50.14 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=46.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC
Q ss_conf 999879873344999999988198797500442116822242346768742340433144513
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA 75 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~ 75 (133)
++-+||||+|||+||=.||+.+|.+.+=.| |.=| .=|-|..-+=|-|=-.||+=+.
T Consensus 530 FLF~GPTGVGKTElak~LA~~LGv~l~RFD-MSEY------mEKHTVsRLIGsPPGYVGfEqG 585 (774)
T TIGR02639 530 FLFVGPTGVGKTELAKQLAEELGVHLLRFD-MSEY------MEKHTVSRLIGSPPGYVGFEQG 585 (774)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCHHCCCC-CHHH------HHHHHHHHHHCCCCCCCCCCCC
T ss_conf 886479896257889999997082001046-5044------6899998741688885131677
No 29
>PRK07429 phosphoribulokinase; Provisional
Probab=97.44 E-value=0.0002 Score=47.86 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=66.7
Q ss_pred EEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCC---EEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCC
Q ss_conf 1100589849999879873344999999988198---7975004421168222423467687423404331445137655
Q 537021.9.peg.8 3 MMFLSTHTKAIFISGPTASGKSLCAVNLAHKFNG---AIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSY 79 (133)
Q Consensus 3 ~~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~---~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~ 79 (133)
|+-|+.+|-+|-|+|-+|||||.++-.|++.|+. .+|+.|+. |+ .+.+++... .++.++| +.+
T Consensus 1 m~~m~~rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdY--hk--------~dr~~r~~~---~~t~lhP-~An 66 (331)
T PRK07429 1 MTSMPDRPVIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDY--HS--------LDRKQRKEI---GITALDP-RAN 66 (331)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--CC--------CCHHHHHHC---CCCCCCC-CHH
T ss_conf 998999998999857887789999999999838887799947867--77--------887889871---8987896-400
Q ss_pred CHHHHHHHHHHHHHHHHHHHCHHH---------HHHHCCCEEEEECCCHHHHHHH
Q ss_conf 899999999999999984100000---------1332598559988930899998
Q 537021.9.peg.8 80 STGKWLRYAIKKIAEVQKTVFTYN---------SRWDRSLFSCINRSTLYYARNT 125 (133)
Q Consensus 80 sv~~f~~~a~~~i~~i~~~~~~~~---------~~~~r~~~piivGGTglY~~al 125 (133)
+...+.+....+.+.-.-..+.++ ...+.+.+-|+.|==.||.+.+
T Consensus 67 d~dLl~e~L~~Lk~Gk~I~~PvYdh~tg~~~~~~~I~P~~vIIvEGLh~L~~~~l 121 (331)
T PRK07429 67 NFDLMYEQLKALKTGQPILKPIYNHETGKIDPPEYIKPNKIVVVEGLHPLYDERV 121 (331)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCHHCCCHHH
T ss_conf 5999999999998599725652356478778866606886799916121287989
No 30
>PRK07261 topology modulation protein; Provisional
Probab=97.44 E-value=0.00012 Score=49.21 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=31.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH
Q ss_conf 9998798733449999999881987975004421
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSMQV 46 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv 46 (133)
|.|+|+.|||||.||-.|+++++.+.+..|+..-
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHF 36 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 9998899986899999999987979797022788
No 31
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.44 E-value=0.00015 Score=48.70 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=42.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 84999987987334499999998819879750044211682224234676874234043314451
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
.++|+|+||+||||+.|.-.|.+..+.-- .-..-.|=.|-+.|..++.||+++--+
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~---------~~vs~TTR~~R~gE~dG~dY~Fvs~~~ 56 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLK---------FSISATTRKPRPGEVDGVDYFFVSKEE 56 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCE---------EEEECCCCCCCCCCCCCCCEEEECHHH
T ss_conf 93999989998899999999997689944---------887044689799877887347850899
No 32
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.00017 Score=48.31 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC----C---CEEEECCHH
Q ss_conf 898499998798733449999999881----9---879750044
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF----N---GAIINADSM 44 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~----~---~~IIs~DS~ 44 (133)
...++++++||||+|||...-+||-++ + ..+|++|..
T Consensus 208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~Dty 251 (412)
T PRK05703 208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTY 251 (412)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 56736999888887567699999999999729981799983767
No 33
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.41 E-value=0.00017 Score=48.27 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHH
Q ss_conf 8499998798733449999999881-----9879750044
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSM 44 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~ 44 (133)
|.+|+++||||+|||.-..+||.++ +..+|++|..
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~ 40 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTF 40 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9699998999998899999999999977992899975877
No 34
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.40 E-value=0.00012 Score=49.26 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=28.7
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHC--CCEEEECCH
Q ss_conf 1005898499998798733449999999881--987975004
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKF--NGAIINADS 43 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~--~~~IIs~DS 43 (133)
-++++--++ =+.||||+|||.||+.||+.+ |..+|+.|.
T Consensus 16 ~yL~~G~Pv-Hl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~ 56 (265)
T TIGR02640 16 RYLKSGYPV-HLRGPAGTGKTTLAMHVARKRDRPVVLINGDA 56 (265)
T ss_pred HHHCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 632278866-74478885568999999973689689986582
No 35
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=97.38 E-value=0.00022 Score=47.65 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=58.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCE-----EEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 99998798733449999999881987-----9750044211682224234676874234043314451376558999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGA-----IINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~-----IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
+|.|+||+|||||.+|-.|++.++.+ .++.|+.-.+ +.--.....+++......-+++.+| +.++...+.+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~---d~~~~~~~~~~~~~~~~~~~~~d~P-~a~d~~ll~~ 76 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRY---DRFYMDLHMEDRKRAGNNHYSFFSP-EANDFDLLYE 76 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE---CHHCCCCCHHHHHHCCCCCCCCCCC-CCCCHHHHHH
T ss_conf 98998998571999999999996605877641243179860---4102443757676514578897896-6235999999
Q ss_pred HHHHHHHHHHHHHCHHHH----------HHHCCCEEEEECCCHHHHHH
Q ss_conf 999999999841000001----------33259855998893089999
Q 537021.9.peg.8 87 YAIKKIAEVQKTVFTYNS----------RWDRSLFSCINRSTLYYARN 124 (133)
Q Consensus 87 ~a~~~i~~i~~~~~~~~~----------~~~r~~~piivGGTglY~~a 124 (133)
....+.+.-....+.++. ....+.+.|+.|=-.||.+.
T Consensus 77 ~l~~Lk~g~~i~~P~Ydf~~~~r~~~~~~i~p~~viIvEGi~~l~~~~ 124 (196)
T pfam00485 77 QFKELKEGGSGDKPIYNHVTGEADPWPELIEGADILFIEGLHGLYDER 124 (196)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEECHHHCCCHH
T ss_conf 999970899457656751345336773661788569994333303277
No 36
>PRK07667 uridine kinase; Provisional
Probab=97.36 E-value=0.00018 Score=48.14 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=29.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCE-----EEECCHH
Q ss_conf 499998798733449999999881987-----9750044
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGA-----IINADSM 44 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~-----IIs~DS~ 44 (133)
=+|.|.|++|||||.+|-+|++.++.+ +++.|..
T Consensus 15 ~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~ 53 (190)
T PRK07667 15 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDH 53 (190)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999977989788999999999998665983799966624
No 37
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.34 E-value=0.00088 Score=44.02 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHH
Q ss_conf 5898499998798733449999999881---9879750044211
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVY 47 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvY 47 (133)
+.+|+++++.|+.|||||.++-.+.+.+ |..+||.|-+.-|
T Consensus 9 ~~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~~ 52 (191)
T pfam06414 9 QERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTY 52 (191)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHH
T ss_conf 76987999957998888999999987537899389713587887
No 38
>PTZ00301 uridine kinase; Provisional
Probab=97.34 E-value=0.00029 Score=46.94 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=50.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCH
Q ss_conf 98499998798733449999999881-------98797500442116822242346768742340433144513765589
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF-------NGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYST 81 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv 81 (133)
.+-+|.|+|++|||||.+|-.+++.+ ...+++.|+. |++.+ ..+.+++.. +++=+ .+.++.
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Y--y~d~~----~~~~~~~~~-----~NfDh-P~a~D~ 69 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY--YRDQS----NIPESERAY-----TNYDH-PKSLEH 69 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCCC----CCCHHHCCC-----CCCCC-CCCCCH
T ss_conf 9889999688767899999999999876149980799836766--77876----588656278-----89998-230369
Q ss_pred HHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 9999999999999984100000
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQKTVFTYN 103 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~~~~~~~ 103 (133)
..+.+...++...-....|.++
T Consensus 70 dLl~~~L~~Lk~Gk~I~~P~Yd 91 (210)
T PTZ00301 70 DLLTTHLRELKSGKTVQIPQYD 91 (210)
T ss_pred HHHHHHHHHHHCCCCEECCCCC
T ss_conf 9999999999769963446655
No 39
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.33 E-value=0.00025 Score=47.27 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=33.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 984999987987334499999998819879750044
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSM 44 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~ 44 (133)
+.+.|+++|+.|||||.++-.||++++.+-+-+|..
T Consensus 2 ~~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEECCCCC
T ss_conf 985799982898998999999999959877623443
No 40
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.25 E-value=0.0011 Score=43.44 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCC--CCCHHHHHH
Q ss_conf 984999987987334499999998819879750044211682224234676874234043314451376--558999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQK--SYSTGKWLR 86 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e--~~sv~~f~~ 86 (133)
..-+-+|+||=|||||.|+-.||=+-..+|-+.- =-|+|=|+..=+|.+--|.|+ ++.+-.|.| -.|+..|.+
T Consensus 25 ~GE~HAiMGPNGsGKSTL~~~iaGhp~y~vt~G~--I~f~G~Dll~l~~~ERAR~Gl---FLaFQ~P~EIPGV~~~~FlR 99 (248)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHPKYEVTSGT--ILFKGQDLLELEPDERARAGL---FLAFQYPEEIPGVSNLEFLR 99 (248)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEE--EEECCEECCCCCHHHHHCCCC---EECCCCCCCCCCCCHHHHHH
T ss_conf 8517998688998478887776179933784208--987765200189655640565---10158885568857788999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 537021.9.peg.8 87 YAIKKIAEV 95 (133)
Q Consensus 87 ~a~~~i~~i 95 (133)
.|.+++.+.
T Consensus 100 ~A~NA~R~~ 108 (248)
T TIGR01978 100 SALNARREA 108 (248)
T ss_pred HHHHHHHHH
T ss_conf 999999986
No 41
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.22 E-value=0.00042 Score=45.98 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=40.3
Q ss_pred EEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCC
Q ss_conf 1100589849999879873344999999988198797500442116822
Q 537021.9.peg.8 3 MMFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLR 51 (133)
Q Consensus 3 ~~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~ 51 (133)
++++.+..|||.|=||-|||||.+|-.||++++.. =+||=.+||-+.
T Consensus 277 Ni~L~~~~~IIAIDGPAgSGKSTvAK~lA~~L~~~--yLDTGamYRAva 323 (512)
T PRK13477 277 NVFLMKRRPIIAIDGPAGAGKSTVTRAVAKKLGLL--YLDTGAMYRAVT 323 (512)
T ss_pred EEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EECCCHHHHHHH
T ss_conf 10115788779986787578789999999981996--862449999999
No 42
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.20 E-value=0.00033 Score=46.61 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 9999879873344999999988198797500442
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQ 45 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Q 45 (133)
+|+++|+.|||||.+|-.||++++..-|..|...
T Consensus 1 liiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h 34 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLH 34 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 9899918999999999999997199564154335
No 43
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.00054 Score=45.27 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEECCHHHH
Q ss_conf 898499998798733449999999881------987975004421
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF------NGAIINADSMQV 46 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~------~~~IIs~DS~Qv 46 (133)
.++++++++||||+|||.---.||-++ ...+|.+|...+
T Consensus 221 ~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRI 265 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 776299998999988899999999999997499279995266537
No 44
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.13 E-value=0.00054 Score=45.30 Aligned_cols=106 Identities=10% Similarity=0.080 Sum_probs=62.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEECCHH-HHHCCCCCCCCCCCHHHHCCCEEEECCEEC---------CC
Q ss_conf 8984999987987334499999998819-879750044-211682224234676874234043314451---------37
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-GAIINADSM-QVYDTLRILTSRPSDQDMQSIPHYLYGYVP---------AQ 76 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-~~IIs~DS~-QvYk~l~IgTaKps~~e~~~v~H~lid~~~---------~~ 76 (133)
.+|-+|+|-|+||+|||.+|..||.++| ..+||-||. +|-|.+- +.+-.|.--. -.++-...+. +.
T Consensus 260 ~~PiiILIGGaSGvGKSTlAseLA~RLGI~~VIsTDsIREVMR~~i--s~el~P~Lh~-SSy~Awk~L~~~~~~~~~~~~ 336 (492)
T PRK12337 260 PRPLHVLLGGVSGTGKSVLAAELAYRLGITRVVPTDAIREVMRAMV--SKDLLPTLHA-STFNAWEALVPPGLGLPGEPT 336 (492)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC--CHHHCCHHHH-HHHHHHHHCCCCCCCCCCCCC
T ss_conf 8876999607888668889999999609881025447999999845--9764845777-556888860873457777860
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHH
Q ss_conf 65589999999999999998410000013325985599889308
Q 537021.9.peg.8 77 KSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLY 120 (133)
Q Consensus 77 e~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTgl 120 (133)
+.--..-|...+......+.+- --.+.+....+|+-|.++
T Consensus 337 ~~~vi~GF~~Qv~~V~vGl~aV----ieRa~~EG~SvVIEGVHL 376 (492)
T PRK12337 337 RVELLAGFRDQVQQVSVGLKAV----VRRSILEGTSLVLEGVHL 376 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCEEEEEEEE
T ss_conf 7689989999999999999999----999997288679983330
No 45
>KOG0745 consensus
Probab=97.12 E-value=0.00048 Score=45.60 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=68.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCC-----------HHHHCCCEEEECCEEC----
Q ss_conf 8499998798733449999999881987975004421168222423467-----------6874234043314451----
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPS-----------DQDMQSIPHYLYGYVP---- 74 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps-----------~~e~~~v~H~lid~~~---- 74 (133)
+.=++++||||||||-||-.||+-++.+|.=||.-+.-+-=-+|-+-.+ ..|+++----++|.+|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEHHHHHCC
T ss_conf 35479977888764389999999708876873255220055345429999999999725789988267388760124413
Q ss_pred CCCCCCHH------HHHHHHHHHHHHHHHHHCHHHH---------HHHCCCEEEEECCCHHHHHHHHCCCCCC
Q ss_conf 37655899------9999999999999841000001---------3325985599889308999984184357
Q 537021.9.peg.8 75 AQKSYSTG------KWLRYAIKKIAEVQKTVFTYNS---------RWDRSLFSCINRSTLYYARNTYCNKRKD 132 (133)
Q Consensus 75 ~~e~~sv~------~f~~~a~~~i~~i~~~~~~~~~---------~~~r~~~piivGGTglY~~al~~~~~~d 132 (133)
+.+..+.. --++...+.++.---+++..+. ...-..+.++++|.--=++-++...+.|
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d 378 (564)
T KOG0745 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD 378 (564)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6765454445662669999999852627702677877789998589713666888034323569898876300
No 46
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.003 Score=40.79 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCC--CCCHHHHHH
Q ss_conf 984999987987334499999998819879750044211682224234676874234043314451376--558999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQK--SYSTGKWLR 86 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e--~~sv~~f~~ 86 (133)
...+-+|+||-|||||.||..|+-.=+.+|.+.+ =.|+|=||..--|+.--+.++ ++-+-.|.| -.++.+|.+
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~--I~~~GedI~~l~~~ERAr~Gi---fLafQ~P~ei~GV~~~~fLr 103 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE--ILFDGEDILELSPDERARAGI---FLAFQYPVEIPGVTNSDFLR 103 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCE--EEECCCCCCCCCHHHHHHCCC---EEEECCCCCCCCEEHHHHHH
T ss_conf 9828999889987889999997289974675556--998785425599868886187---76511775477800999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 537021.9.peg.8 87 YAIKK 91 (133)
Q Consensus 87 ~a~~~ 91 (133)
.|.+.
T Consensus 104 ~a~n~ 108 (251)
T COG0396 104 AAMNA 108 (251)
T ss_pred HHHHH
T ss_conf 99975
No 47
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.00066 Score=44.77 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=31.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC---------CCEEEECCHHH
Q ss_conf 5898499998798733449999999881---------98797500442
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF---------NGAIINADSMQ 45 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~---------~~~IIs~DS~Q 45 (133)
+.++++++++||||+|||.-.-.||.++ +..+|.+|...
T Consensus 171 ~~k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyR 218 (388)
T PRK12723 171 NLKKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 557628999899887578799999999998626767737999807875
No 48
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.11 E-value=0.00051 Score=45.44 Aligned_cols=45 Identities=36% Similarity=0.403 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECC-HHHH--HCCCCCCCCC
Q ss_conf 9999879873344999999988198797500-4421--1682224234
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINAD-SMQV--YDTLRILTSR 56 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~D-S~Qv--Yk~l~IgTaK 56 (133)
+|.|.||=|||||..|-.||++|+-+-||+= =||+ -+||+|.-.+
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~iRelA~~~Gldl~E~~ 49 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIRELAEKMGLDLAESK 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCHHHHH
T ss_conf 788735896864789999998639831202007889864298877734
No 49
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.10 E-value=0.00082 Score=44.19 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=54.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 98499998798733449999999881987975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
.+|=|+++|+-|||||.++-.||++++.+.|..|..-.- . +...+-+.-+.+--..|++.-
T Consensus 3 ~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie~--------------~-----~g~si~~If~~~Ge~~FR~~E 63 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK--------------R-----TGADIGWVFDVEGEEGFRDRE 63 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH--------------H-----HCCCHHHHHHHHHHHHHHHHH
T ss_conf 888289889999988999999999969996878099999--------------9-----798999999997499999999
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 9999999841000001332598559988930899
Q 537021.9.peg.8 89 IKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYA 122 (133)
Q Consensus 89 ~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~ 122 (133)
.+++.++.. +....|-+||.-.+-
T Consensus 64 ~~~l~~l~~----------~~~~VIstGGG~v~~ 87 (172)
T PRK05057 64 EKVINELTE----------KQGIVLATGGGSVKS 87 (172)
T ss_pred HHHHHHHHC----------CCCEEEECCCCCCCC
T ss_conf 999998854----------799799789853588
No 50
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.10 E-value=0.00062 Score=44.94 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=30.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHHHH
Q ss_conf 98499998798733449999999881-------987975004421
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF-------NGAIINADSMQV 46 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~Qv 46 (133)
+.++++++||||+|||.-.-+||-++ +..+|+.|+..+
T Consensus 175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRI 219 (404)
T PRK06995 175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI 219 (404)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 475589866888763758999999999983898379997687547
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.09 E-value=0.00053 Score=45.36 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCC--------HHHHCCCEEEECCEEC
Q ss_conf 898499998798733449999999881---987975004421168222423467--------6874234043314451
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPS--------DQDMQSIPHYLYGYVP 74 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps--------~~e~~~v~H~lid~~~ 74 (133)
..++-+++.||+|+|||.+|-.+|+.+ +..++..+.-.++....+....-. ..+.....=-++|.++
T Consensus 17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~ 94 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 799808998999988659999999971213798278547770467777576057788989999997699869820166
No 52
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.07 E-value=0.0013 Score=42.94 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHH
Q ss_conf 99998798733449999999881-----9879750044
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF-----NGAIINADSM 44 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~ 44 (133)
+|+++||||+|||.-.-+||.++ +..+|++|..
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99998999998899999999999976992899974887
No 53
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=97.03 E-value=0.00055 Score=45.24 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 84999987987334499999998819
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.|.++++||.|+|||+||+.+|+.++
T Consensus 50 GraiLlaGppGTGKTAlA~aiakeLG 75 (395)
T pfam06068 50 GRAVLIAGPPGTGKTALAIAISKELG 75 (395)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 73899877999888999999999748
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=97.03 E-value=0.00093 Score=43.87 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 984999987987334499999998819879750
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINA 41 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~ 41 (133)
..|.+++.||.|+|||.+|..||+.+|.++|-.
T Consensus 39 ~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viEl 71 (403)
T PRK04195 39 PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 71 (403)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 574699889399879999999999849985997
No 55
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.01 E-value=0.00066 Score=44.76 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=44.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHH
Q ss_conf 99998798733449999999881-------98797500442116822242346768742340433144513765589999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF-------NGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKW 84 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f 84 (133)
+|-|+|++|||||.+|-.|++.+ ...+|+.|+. |..-.. .+++.. .+..+..+.|+...+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f--~~~~~~------l~~~~~-----~~~~g~P~afD~~ll 67 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF--LYPNKE------LIERGL-----MDRKGFPESYDMEAL 67 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCCHH------HHHHHH-----HHHCCCCHHCCHHHH
T ss_conf 9897889987799999999998600269994899978787--578522------888646-----651699302159999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 537021.9.peg.8 85 LRYAIKKIA 93 (133)
Q Consensus 85 ~~~a~~~i~ 93 (133)
.+....+..
T Consensus 68 ~~~L~~Lk~ 76 (220)
T cd02025 68 LKFLKDIKS 76 (220)
T ss_pred HHHHHHHHC
T ss_conf 999999975
No 56
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.00 E-value=0.0012 Score=43.19 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 98499998798733449999999881987975004
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
+.+=|+++|+-|||||.++-.||++++.+.+..|.
T Consensus 3 ~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~ 37 (175)
T PRK00131 3 KGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDH 37 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 99808988899999899999999995969023988
No 57
>PRK12338 hypothetical protein; Provisional
Probab=97.00 E-value=0.00095 Score=43.82 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=63.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHH-HHHCCCCCCCCCCCHHHHCCCEEEECCEEC-C-------CC
Q ss_conf 89849999879873344999999988198-79750044-211682224234676874234043314451-3-------76
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSM-QVYDTLRILTSRPSDQDMQSIPHYLYGYVP-A-------QK 77 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~-QvYk~l~IgTaKps~~e~~~v~H~lid~~~-~-------~e 77 (133)
.+|-+|+|.|++|+|||.+|-.||.+++. .+||-||. ||-|++==.---|.--+ . .++-...+. + .+
T Consensus 2 r~PliILiGGtSGvGKSTlAseLAsRLgI~tvIsTDsIRevmR~~is~e~~P~L~~--S-TY~A~~~Lr~~~~~~~~~~~ 78 (320)
T PRK12338 2 RKPYVILIGSASGIGKSTIASEVARRLNIKHLIETDFIREVVRGIIGKEYAPALHM--S-SYNAYTALRDKDHFVPKRFE 78 (320)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHH--H-HHHHHHHHCCCCCCCCCCHH
T ss_conf 97679997068887688899999985198711033479999998338041534554--2-02678872674235774116
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 558999999999999999841000001332598559988930899
Q 537021.9.peg.8 78 SYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYA 122 (133)
Q Consensus 78 ~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~ 122 (133)
+--.+-|...+.-.+..+.+- -.+|.+....+++-|.++-.
T Consensus 79 ~~vi~Gfe~q~e~V~~~le~v----I~r~~~~~~sivIEGVHLvP 119 (320)
T PRK12338 79 ELVIAGFEEHASFVIPAIEKV----IKRAVTDADDIVIEGVHLVP 119 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCEEEEEEEECH
T ss_conf 789999999989999999999----99998648867998453055
No 58
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.98 E-value=0.00094 Score=43.83 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=43.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHHHH--------HC---CCCCCCCCCCHH------HHCC
Q ss_conf 98499998798733449999999881-------987975004421--------16---822242346768------7423
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF-------NGAIINADSMQV--------YD---TLRILTSRPSDQ------DMQS 64 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~Qv--------Yk---~l~IgTaKps~~------e~~~ 64 (133)
+++++.++||||+|||.---.||-++ +..||+.|+..+ |- ++++--+.+..+ .+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHC
T ss_conf 68579998998875887999999999753257606899714411528999999999869955996399999999998531
Q ss_pred CEEEECCEEC
Q ss_conf 4043314451
Q 537021.9.peg.8 65 IPHYLYGYVP 74 (133)
Q Consensus 65 v~H~lid~~~ 74 (133)
+.|-|+|..-
T Consensus 282 ~d~ILVDTaG 291 (407)
T COG1419 282 CDVILVDTAG 291 (407)
T ss_pred CCEEEEECCC
T ss_conf 8889996899
No 59
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.97 E-value=0.00091 Score=43.92 Aligned_cols=42 Identities=31% Similarity=0.382 Sum_probs=35.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCC
Q ss_conf 89849999879873344999999988198797500442116822
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLR 51 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~ 51 (133)
.++.+|.|=||.|||||.+|-.||+++|.. =.||=.+||-+.
T Consensus 2 ~~~iIIaIDGpagSGKST~ak~lA~~L~~~--yldTG~~YRa~a 43 (225)
T PRK00023 2 MKAPVIAIDGPAGSGKGTVAKILAKKLGFH--YLDTGAMYRAVA 43 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EECHHHHHHHHH
T ss_conf 989789965898678789999999993988--764109999999
No 60
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.97 E-value=0.00096 Score=43.78 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=39.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCE
Q ss_conf 9999879873344999999988198797500442116822242346768742340433144
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGY 72 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~ 72 (133)
+|+|+||.||||+.|.-.|.++++..+- .-..-.|-+|-+.|..++.||+++-
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~~--------~~vs~TTR~~r~~E~~G~dY~Fvs~ 53 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG--------FSVSHTTRKPRPGEVDGVDYHFVSK 53 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEE--------EEEEEECCCCCCCCCCCCEEEEECH
T ss_conf 9999999988999999999851987768--------7566037899888778967898679
No 61
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.96 E-value=0.0017 Score=42.28 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=50.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHH
Q ss_conf 84999987987334499999998819879750044211682224234676874234043314451376558999999999
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAI 89 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~ 89 (133)
++=|+++|+-|||||.++-.||++++.+-+..|..=.- ++...+-+.-+..--..|++.-.
T Consensus 2 ~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~-------------------~~g~sI~eif~~~Ge~~FR~~E~ 62 (172)
T PRK03731 2 TQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQS-------------------TLQMTVAEIVEREGWAGFRARES 62 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH-------------------HHCCCHHHHHHHHCHHHHHHHHH
T ss_conf 99889988999988999999999859997978699998-------------------83989999999839899999999
Q ss_pred HHHHHHHHHHCHHHHHHHCCCEEEEECCCHH
Q ss_conf 9999998410000013325985599889308
Q 537021.9.peg.8 90 KKIAEVQKTVFTYNSRWDRSLFSCINRSTLY 120 (133)
Q Consensus 90 ~~i~~i~~~~~~~~~~~~r~~~piivGGTgl 120 (133)
+++..+. +....|-+||.-.
T Consensus 63 ~~l~~l~-----------~~~~VIstGGG~v 82 (172)
T PRK03731 63 AALEAVT-----------APSTVVATGGGII 82 (172)
T ss_pred HHHHHHC-----------CCCEEEEECCCCC
T ss_conf 9999842-----------7882898078642
No 62
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.0009 Score=43.96 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHH
Q ss_conf 8984999987987334499999998819-----8797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~Q 45 (133)
.++-+|.|.|++|||||.||-+|++.++ ..+++.|..-
T Consensus 24 ~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~ 66 (227)
T PRK06696 24 TRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFH 66 (227)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9868999778998787999999999997469948997154434
No 63
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00093 Score=43.86 Aligned_cols=66 Identities=30% Similarity=0.392 Sum_probs=49.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC--------CCCCC
Q ss_conf 999987987334499999998819---8797500442116822242346768742340433144513--------76558
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA--------QKSYS 80 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~--------~e~~s 80 (133)
.++.+||||+|||+||-.||+.+. ...|..| |.=| ..|-|...+-|-|...+++=+. ..+||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy------~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PyS 595 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY------MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYS 595 (786)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEC-HHHH------HHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCE
T ss_conf 7886678865699999999999659974445545-6877------77877998727999872006554003766069986
Q ss_pred HHHH
Q ss_conf 9999
Q 537021.9.peg.8 81 TGKW 84 (133)
Q Consensus 81 v~~f 84 (133)
|-.|
T Consensus 596 ViLl 599 (786)
T COG0542 596 VILL 599 (786)
T ss_pred EEEE
T ss_conf 8884
No 64
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0012 Score=43.23 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=31.9
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHH
Q ss_conf 05898499998798733449999999881-----9879750044
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSM 44 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~ 44 (133)
...++++|+++||||||||.-.-.||.++ ...+|++|..
T Consensus 71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~Dty 114 (270)
T PRK06731 71 FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 67998189998889898899999999999867990899983888
No 65
>PRK06547 hypothetical protein; Provisional
Probab=96.94 E-value=0.0012 Score=43.11 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=34.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-CCEEEECCHHHHHCCCC
Q ss_conf 98499998798733449999999881-98797500442116822
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF-NGAIINADSMQVYDTLR 51 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~-~~~IIs~DS~QvYk~l~ 51 (133)
..++|.|=||.|||||.||-.|+..+ +..+|..| -+|.|.+
T Consensus 14 ~~~iVaIDG~sGaGKTTLA~~La~~~~~~~vvHmD--D~Y~GW~ 55 (184)
T PRK06547 14 DMITVLIDGRSGSGKTTLAGELAACWEGSQLVHLD--DLYPGWD 55 (184)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC--CCCCCCC
T ss_conf 76999986899888899999999745798289705--7777765
No 66
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00054 Score=45.29 Aligned_cols=56 Identities=23% Similarity=0.416 Sum_probs=40.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 999987987334499999998819879750044211682224234676874234043314451
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
.++.+||||+|||+||-.||+.++.+.|-.| |.=| ..+-+..-+-|-|--.+++=+
T Consensus 490 sFlf~GPTGVGKTElak~LA~~L~~~lir~D-MSEy------~e~hsvsrLiGaPPGYVGy~e 545 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD-MSEY------MERHTVSRLIGAPPGYVGFDQ 545 (758)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH------CCHHHHHHHCCCCCCCCCCCC
T ss_conf 8999789987779999999999866772142-6653------120147774489986667677
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.88 E-value=0.0014 Score=42.79 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=40.7
Q ss_pred CCCCCE--EEEECCCCCCHHHHHHHHHHHC-CCE--EEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 589849--9998798733449999999881-987--9750044211682224234676874234043314451
Q 537021.9.peg.8 7 STHTKA--IFISGPTASGKSLCAVNLAHKF-NGA--IINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 7 ~~~~~i--i~I~GpTasGKT~lai~LA~~~-~~~--IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
+..+|+ ++.+||||+|||+||-.||+.+ +.+ +|-.| |.=| .-|-|..-+-|-|-..+|+-+
T Consensus 591 d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~D-MSEy------~E~hsvsrLiGaPPGYVGy~e 656 (852)
T TIGR03345 591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN-MSEF------QEAHTVSRLKGSPPGYVGYGE 656 (852)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC-CHHH------CCHHHHHHHCCCCCCCCCCCC
T ss_conf 99998568998789987789999999999719861147842-2432------104368786389997667487
No 68
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.86 E-value=0.00085 Score=44.11 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9849999879873344999999988198797500
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
.||=|+.+||||+|||+.|=.|||-.+++=|=+-
T Consensus 46 ~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVE 79 (463)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (463)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 8743043278898544799999998448914666
No 69
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.85 E-value=0.0011 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC----------CEEEECC
Q ss_conf 984999987987334499999998819----------8797500
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN----------GAIINAD 42 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~----------~~IIs~D 42 (133)
-.|.++++||.++|||+||+.+|+.++ +||-|.+
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E 107 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLE 107 (450)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEC
T ss_conf 66179997899976889999999985899982150133223310
No 70
>PRK06217 hypothetical protein; Validated
Probab=96.85 E-value=0.0022 Score=41.59 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=37.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCC--CCCCCCCCHHHHC
Q ss_conf 4999987987334499999998819879750044211682--2242346768742
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTL--RILTSRPSDQDMQ 63 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l--~IgTaKps~~e~~ 63 (133)
+-|.|+|..|||||.||-.||++++.+.+..| ++|-.- +=-+-|-+++|+.
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD--~~~W~p~~~pf~~kR~~~eR~ 54 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTD--DFFWLPTDPPFTTKREPEERL 54 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECC--CCEECCCCCCCCCCCCHHHHH
T ss_conf 67999789988789999999997598968645--553568999756437999999
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.84 E-value=0.0014 Score=42.82 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=39.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 99998798733449999999881---9879750044211682224234676874234043314451
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
.++.+||||+|||+||-.||+.+ .-..|..| |.=| .-+-|..-+-|-|--.+|+-+
T Consensus 597 sFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriD-MSEy------~E~hsvsrLiGaPPGYVGy~e 655 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEY------MEKHSVARLIGAPPGYVGYEE 655 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEC-HHHH------CCHHHHHHHCCCCCCCCCCCC
T ss_conf 8998678877689999999999855852069843-0443------012247785589997677687
No 72
>PRK13946 shikimate kinase; Provisional
Probab=96.84 E-value=0.0024 Score=41.40 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=54.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 98499998798733449999999881987975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
.++=|+++|+.|||||.++-.||+.++.+-+..|..=. +. +...+-+.-+.+--..|++.-
T Consensus 19 ~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~~IE--------------~~-----~g~sI~eIF~~~GE~~FR~~E 79 (195)
T PRK13946 19 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIE--------------RA-----ARMTIPEIFATYGEPEFRDLE 79 (195)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--------------HH-----HCCCHHHHHHHHCHHHHHHHH
T ss_conf 89958998999998899999999997979898859999--------------98-----099899999986979999989
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHH
Q ss_conf 999999984100000133259855998893089
Q 537021.9.peg.8 89 IKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYY 121 (133)
Q Consensus 89 ~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY 121 (133)
.+.+.++.. .+...|-+||...+
T Consensus 80 ~~~l~~l~~----------~~~~VIstGGG~v~ 102 (195)
T PRK13946 80 RRVIARLLK----------GGPLVLATGGGAFM 102 (195)
T ss_pred HHHHHHHHC----------CCCEEEECCCCCCC
T ss_conf 999999864----------89879975874236
No 73
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.83 E-value=0.0019 Score=41.99 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=61.4
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHH
Q ss_conf 05898499998798733449999999881987975004421168222423467687423404331445137655899
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTG 82 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~ 82 (133)
+.-...=++|.||.++|||++|++|-++ +...|+=|...+++.-+-..+++.+.-+....-..+++++....|-+.
T Consensus 10 v~i~g~GvLi~G~SG~GKS~lal~Li~r-Gh~LVaDD~v~i~~~~~~l~g~~p~~~~~~~EvRg~Gii~v~~~fG~~ 85 (149)
T cd01918 10 VEVGGIGVLITGPSGIGKSELALELIKR-GHRLVADDRVVVKREGGRLVGRAPEALKGLIEIRGLGIIDVPRLYGIE 85 (149)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHC-CCEEEECCEEEEEEECCEEEEECCHHHCCCEEECCCCEEEEEHHCCHH
T ss_conf 9999989999878999989999999981-997872787999997999999788476581467377389863320422
No 74
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0016 Score=42.44 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHHH
Q ss_conf 89849999879873344999999988198-797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~Q 45 (133)
.++.+|+|-|++|+|||.+|-++|.+++- .+||-||..
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IR 125 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIR 125 (299)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCHHHH
T ss_conf 787599961788777257999999972986100424799
No 75
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.002 Score=41.87 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=35.0
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 1005898499998798733449999999881-----98797500442
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
|.|..++-+|++.|..|||||.+|-.|.+++ +..++..|-+.
T Consensus 1 ~~~~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR 47 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 98788867999789999989999999999999759977998868999
No 76
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.78 E-value=0.0015 Score=42.57 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---EEEECCHHHHH
Q ss_conf 9999879873344999999988198---79750044211
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNG---AIINADSMQVY 47 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~---~IIs~DS~QvY 47 (133)
.++++|||++|||.||-.||+.+++ ..+..|..+..
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~ 43 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYM 43 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 999889899899999999999967985344885575654
No 77
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.77 E-value=0.0015 Score=42.57 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=40.8
Q ss_pred CCCC--EEEEECCCCCCHHHHHHHHHHHC-CC--EEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 8984--99998798733449999999881-98--79750044211682224234676874234043314451
Q 537021.9.peg.8 8 THTK--AIFISGPTASGKSLCAVNLAHKF-NG--AIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 8 ~~~~--ii~I~GpTasGKT~lai~LA~~~-~~--~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
..+| .++.+||||+|||+||-.||+.+ +. ..|-.| |.=| .-|-|..-+-|-|-..+|+-+
T Consensus 535 ~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~D-MSEy------~E~hsvsrLIGaPPGYVGy~e 599 (823)
T CHL00095 535 PNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLD-MSEY------MEKHTVSKLIGSPPGYVGYNE 599 (823)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC-CCCC------CCCCCHHHHCCCCCCCCCCCC
T ss_conf 9997468998789988779999999999747820258853-5101------554207674589987667787
No 78
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.74 E-value=0.0015 Score=42.59 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=28.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9999879873344999999988198797500
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
+|.|-||.|||||.+|-.||++++..-+|.-
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~ldtG 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECCC
T ss_conf 9888689978989999999999099077665
No 79
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.73 E-value=0.0012 Score=43.12 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCC
Q ss_conf 84999987987334499999998819879750044211682224234676874234043314451376558
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYS 80 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~s 80 (133)
.=||++.||||||||.-=..-=.++|.+ +.||.|=- .|-| +.=++|+-.-.++..-
T Consensus 245 HGIiLVTGPTGSGKtTTLYaaL~~LN~~-----------~~NIlTvE-DPVE---Y~i~GIgQ~Qvn~kIg 300 (495)
T TIGR02533 245 HGIILVTGPTGSGKTTTLYAALSRLNTP-----------ERNILTVE-DPVE---YQIEGIGQIQVNPKIG 300 (495)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCC-----------CCCEEEEE-CCEE---EEECCCCEEEECCCCC
T ss_conf 9618841778985258899999863589-----------97156865-7824---7624876365146543
No 80
>PRK13947 shikimate kinase; Provisional
Probab=96.72 E-value=0.0029 Score=40.89 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=47.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHH
Q ss_conf 99998798733449999999881987975004421168222423467687423404331445137655899999999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKK 91 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~ 91 (133)
=|+++|+-|||||.++-.||++++.+-+..|..-.- ++...+-+.-+.+--..|++.-.+.
T Consensus 3 nI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie~-------------------~~g~sI~eIf~~~GE~~FR~~E~~~ 63 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIEK-------------------MAGMTVSEIFEKDGEVRFRSLEKAA 63 (171)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH-------------------HCCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 589979999988999999999979698987499998-------------------8299889999984899999999999
Q ss_pred HHHHH
Q ss_conf 99998
Q 537021.9.peg.8 92 IAEVQ 96 (133)
Q Consensus 92 i~~i~ 96 (133)
+.++.
T Consensus 64 l~~~~ 68 (171)
T PRK13947 64 VRKAA 68 (171)
T ss_pred HHHHC
T ss_conf 99740
No 81
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.71 E-value=0.0015 Score=42.67 Aligned_cols=47 Identities=36% Similarity=0.463 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHH-CCCEE
Q ss_conf 84999987987334499999998819879750044211682224234676874-23404
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDM-QSIPH 67 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~-~~v~H 67 (133)
.++++|.|...||||++|-+||...+..+ .-|.|++|..+|+ .+|.+
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~~~~~~-----------~YiAT~~~~D~Em~~RI~~ 48 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQV-----------LYIATAQPLDDEMAARIAH 48 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCE-----------EEEECCCCCCHHHHHHHHH
T ss_conf 98999979876348999999998569982-----------9997588888789999999
No 82
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.0017 Score=42.35 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=49.7
Q ss_pred CCCC--EEEEECCCCCCHHHHHHHHHHHC-C--CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC-------
Q ss_conf 8984--99998798733449999999881-9--8797500442116822242346768742340433144513-------
Q 537021.9.peg.8 8 THTK--AIFISGPTASGKSLCAVNLAHKF-N--GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA------- 75 (133)
Q Consensus 8 ~~~~--ii~I~GpTasGKT~lai~LA~~~-~--~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~------- 75 (133)
..+| .++.+||||+|||+||-.||+.+ + -..|..| |.=| ..+-|..-+-|-|--.+|+-+.
T Consensus 594 p~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriD-MSEy------~E~hsVSrLiGaPPGYVGy~eGG~LTeaV 666 (857)
T PRK10865 594 PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEF------MEKHSVSRLVGAPPGYVGYEEGGYLTEAV 666 (857)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEEC-CHHH------CCCHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 9997389998689878889999999999838933425625-3321------13012767558998766757788110999
Q ss_pred -CCCCCHHHHH
Q ss_conf -7655899999
Q 537021.9.peg.8 76 -QKSYSTGKWL 85 (133)
Q Consensus 76 -~e~~sv~~f~ 85 (133)
..+|+|-.|-
T Consensus 667 Rr~PySVvLfD 677 (857)
T PRK10865 667 RRRPYSVILLD 677 (857)
T ss_pred HHCCCEEEEEH
T ss_conf 81987788632
No 83
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.70 E-value=0.0032 Score=40.63 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=30.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 99987987334499999998819879750044
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSM 44 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~ 44 (133)
|+++|.-|||||.++-.||++++.+.|..|..
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~ 33 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL 33 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
T ss_conf 89988999988999999999979897968599
No 84
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.65 E-value=0.0027 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.7
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 05898499998798733449999999881987975
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIIN 40 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs 40 (133)
.....+++++.||.|||||...--||+.++.+|+-
T Consensus 41 ~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~E 75 (490)
T pfam03215 41 ESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIE 75 (490)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 77773189987989988999999999975968998
No 85
>PRK13949 shikimate kinase; Provisional
Probab=96.63 E-value=0.0042 Score=39.92 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=46.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHH
Q ss_conf 49999879873344999999988198797500442116822242346768742340433144513765589999999999
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIK 90 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~ 90 (133)
+=|+++|+-|||||.++-.||++++.+.+..|..-. ++ +...+-+.-+.+--..|++.-.+
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie--------------~~-----~g~sI~eif~~~Ge~~FR~~E~~ 62 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE--------------NR-----FHKTVGDIFAERGEAVFRELERN 62 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHH--------------HH-----HCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 838997999998899999999995999797849999--------------98-----59999999998698999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q 537021.9.peg.8 91 KIAEVQ 96 (133)
Q Consensus 91 ~i~~i~ 96 (133)
.+.++.
T Consensus 63 ~l~~l~ 68 (169)
T PRK13949 63 MLHEVA 68 (169)
T ss_pred HHHHHH
T ss_conf 999984
No 86
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.62 E-value=0.0029 Score=40.90 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE---EEECCHHHH
Q ss_conf 98499998798733449999999881987---975004421
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA---IINADSMQV 46 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~---IIs~DS~Qv 46 (133)
..+.+.|.||+|||||.++..+|..+... ++.++.-..
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
T ss_conf 99789999999702999999999872668996899875998
No 87
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0022 Score=41.56 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 898499998798733449999999881987975004
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
-.||=|+.+||||+|||+.|-.||+-.+++-|-+.+
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 575535888888876889999999984898378876
No 88
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.60 E-value=0.0032 Score=40.63 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=52.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHH-------CCCEEEE----CCEECC
Q ss_conf 58984999987987334499999998819879750044211682224234676874-------2340433----144513
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDM-------QSIPHYL----YGYVPA 75 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~-------~~v~H~l----id~~~~ 75 (133)
-+.|.=|+|-||||+|||..+-.+.+++..+.=+.|.. |+.|.....+.. ..+--.+ .+.--|
T Consensus 40 G~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~------D~~~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~~vP 113 (383)
T TIGR02928 40 GSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVR------DVSTVYINCQILDTSYQVLVELANQLNRRGSGEEVP 113 (383)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC------CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 48987258878889878899999999999986226997------158999778546846999999999851577888898
Q ss_pred CCCCCHHHHHHHHHHHHH-HH
Q ss_conf 765589999999999999-99
Q 537021.9.peg.8 76 QKSYSTGKWLRYAIKKIA-EV 95 (133)
Q Consensus 76 ~e~~sv~~f~~~a~~~i~-~i 95 (133)
+.-|+..+..+...+.++ +.
T Consensus 114 ~tG~s~~~~~~~l~~~l~~~~ 134 (383)
T TIGR02928 114 TTGLSTSEVFRELYKELNRER 134 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHC
T ss_conf 877878999999999983201
No 89
>PRK09183 transposase/IS protein; Provisional
Probab=96.59 E-value=0.0018 Score=42.09 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---CCCEEEECCHHHHHCCCCCCCCC
Q ss_conf 9849999879873344999999988---19879750044211682224234
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK---FNGAIINADSMQVYDTLRILTSR 56 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~---~~~~IIs~DS~QvYk~l~IgTaK 56 (133)
+..=++++||||+|||.||++|+.. -|-.+.=...-..-..+...-+.
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~ 150 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQ 150 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHC
T ss_conf 588679989999868999999999999879939997899999999999876
No 90
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=96.59 E-value=0.0028 Score=40.95 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=52.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHC-CCCCCCCCCCHHHHCCCEEEECCEECCCCCC
Q ss_conf 849999879873344999999988198797500442116-8222423467687423404331445137655
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYD-TLRILTSRPSDQDMQSIPHYLYGYVPAQKSY 79 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk-~l~IgTaKps~~e~~~v~H~lid~~~~~e~~ 79 (133)
..=++|.||.|+|||++|++|-++- .-.|.=|+.-+|+ +=+..-++++.--.....-.++++++....|
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rg-hrLVaDD~V~i~~~~~~~L~gr~pe~l~gllEIRGlGii~v~~~~ 214 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRG-HRLVADDAVEIFREGGNRLVGRAPELLAGLLEIRGLGIINVMTVF 214 (308)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHC-CCEECCCCEEEEECCCCEEEECCHHHHCCCEEECCCCEEEEEHHC
T ss_conf 2589998789887768999999845-501325607888436976760482786483785255257601104
No 91
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.56 E-value=0.0071 Score=38.52 Aligned_cols=115 Identities=20% Similarity=0.115 Sum_probs=73.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHHHCCCC-------CCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 58984999987987334499999998819-----8797500442116822-------24234676874234043314451
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQVYDTLR-------ILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~QvYk~l~-------IgTaKps~~e~~~v~H~lid~~~ 74 (133)
......+.|+||.-||||.|+.-||.++. ..||.+|-=|-==+.+ +.+.-++-++..-..+++++...
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEEEEECCC
T ss_conf 06873899989867678899999998876447418999689997666797467741256777777775865227985147
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCH-HHHHHHHC
Q ss_conf 376558999999999999999841000001332598559988930-89999841
Q 537021.9.peg.8 75 AQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTL-YYARNTYC 127 (133)
Q Consensus 75 ~~e~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTg-lY~~al~~ 127 (133)
|...+ ..+...+..+.+...+... ..-=+..=.+.|+.| -|..+++.
T Consensus 150 P~~~~--~~~i~~v~rL~~~a~~~~~----~ilIdT~GWi~G~~g~elk~~li~ 197 (398)
T COG1341 150 PQGFP--GRYIAGVARLVDLAKKEAD----FILIDTDGWIKGWGGLELKRALID 197 (398)
T ss_pred CCCCH--HHHHHHHHHHHHHHHCCCC----EEEECCCCCEECCHHHHHHHHHHH
T ss_conf 77776--8999999999998651687----799969984307427899999886
No 92
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.55 E-value=0.0071 Score=38.53 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=24.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC----EEEEC
Q ss_conf 49999879873344999999988198----79750
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNG----AIINA 41 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~----~IIs~ 41 (133)
=+|+|+||||||||.+.-.+...++. .|+..
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTi 36 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 38999899999799999999985363788369996
No 93
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.55 E-value=0.00094 Score=43.85 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=30.8
Q ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCC
Q ss_conf 499998798733449999999-88198797500442116822242346768742340433144513765
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLA-HKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKS 78 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA-~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~ 78 (133)
=+|+|.||||||||= ++.=| .-||-+ +.||-||- .|.| +.=-+||-+..|++
T Consensus 327 GMvLVTGPTGSGKTV-SLYTaLniLN~~-----------~~NISTAE-DPVE---INLpGINQVnvNpK 379 (577)
T TIGR02538 327 GMVLVTGPTGSGKTV-SLYTALNILNTE-----------EVNISTAE-DPVE---INLPGINQVNVNPK 379 (577)
T ss_pred CCEEEECCCCCCHHH-HHHHHHCCCCCC-----------CCCCCCCC-CCEE---EEECCCCEECCCCC
T ss_conf 728862665984168-787631125776-----------74501144-7724---64077151204667
No 94
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.006 Score=38.97 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=45.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 9849999879873344999999988198-79750044211682224234676874234043314451
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
+.++++|.||.|+|||.|.-.|-+..+. ..||+ .|-+|-+.|..|+.||+++.-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~-----------TTR~pR~gEv~G~dY~Fvs~~E 58 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSA-----------TTRKPRPGEVDGVDYFFVTEEE 58 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEE-----------CCCCCCCCCCCCCEEEECCHHH
T ss_conf 8639999899888889999999863493799985-----------2679999875780247577999
No 95
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.47 E-value=0.0031 Score=40.73 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 984999987987334499999998819
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
..+.++|+|||+||||.+...|...++
T Consensus 138 ~~~~ilIsG~TGSGKTT~l~all~~i~ 164 (283)
T pfam00437 138 ARGNILVSGGTGSGKTTLLYALLNEIN 164 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 197599988999988999999998408
No 96
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=96.44 E-value=0.0028 Score=40.93 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=42.1
Q ss_pred ECCCCC-EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 058984-999987987334499999998819879750044211682224234676874234043314451
Q 537021.9.peg.8 6 LSTHTK-AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 6 ~~~~~~-ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
-+.+.| |+|++||=|+|||.||--+|+.+|=+ |==|.+|==+ ...|.+|.+.=.||-.|
T Consensus 445 ~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRk---------FvR~SlGG~~-DeAEIrGHRRTYvGAMP 504 (941)
T TIGR00763 445 GKMKGPQILCLVGPPGVGKTSLGKSIAKALNRK---------FVRFSLGGVR-DEAEIRGHRRTYVGAMP 504 (941)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCE---------EEEEEECCCE-EHHHCCCCCCCCCCCCH
T ss_conf 788887678720726954222789999996880---------4999526722-03112786432034672
No 97
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.0045 Score=39.76 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 898499998798733449999999881-----98797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
...++|.++||||+|||.-.-.||.++ ..-++.+|...
T Consensus 204 ~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 3690899989998978999999999999779917999706677
No 98
>PRK06620 hypothetical protein; Validated
Probab=96.43 E-value=0.0048 Score=39.54 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 98499998798733449999999881987975004
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
..+.++|.||.+||||.|+--.++..++.+++...
T Consensus 43 ~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~~~~ 77 (214)
T PRK06620 43 YKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIF 77 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 55559998799998899999999982858815121
No 99
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.41 E-value=0.0034 Score=40.49 Aligned_cols=43 Identities=33% Similarity=0.443 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCC
Q ss_conf 984999987987334499999998819879750044211682224
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRIL 53 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~Ig 53 (133)
+..+|.|=||.|||||.+|-.+|++++-.-+ ||=.+||=+.-.
T Consensus 1 ~~~~IAIDGPs~aGKStvak~~A~~L~y~yl--dsG~mYR~~a~~ 43 (223)
T TIGR00017 1 MKMIIAIDGPSGAGKSTVAKAVAEKLGYKYL--DSGAMYRALALA 43 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE--CCCHHHHHHHHH
T ss_conf 9863762377646557899999986295021--443289999999
No 100
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.41 E-value=0.0021 Score=41.79 Aligned_cols=47 Identities=32% Similarity=0.439 Sum_probs=34.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHH-CCCEEEE
Q ss_conf 999987987334499999998819879750044211682224234676874-2340433
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDM-QSIPHYL 69 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~-~~v~H~l 69 (133)
+++|.|...||||++|-.||...+... .-|.|++|..+|+ .+|.+|-
T Consensus 1 iiLVtGG~rSGKS~~AE~la~~~~~~~-----------~YiAT~~~~D~Em~~RI~~Hr 48 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPV-----------TYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCC-----------EEEECCCCCCHHHHHHHHHHH
T ss_conf 989977866368999999998459981-----------999788988989999999999
No 101
>PRK08903 hypothetical protein; Validated
Probab=96.40 E-value=0.017 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
..+.++|.||+|||||.|...++...
T Consensus 41 ~~~~l~i~G~~G~GKTHLl~a~~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAAA 66 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78669998999998889999999999
No 102
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0037 Score=40.26 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=35.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCC
Q ss_conf 84999987987334499999998819879750044211682224
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRIL 53 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~Ig 53 (133)
..+|.|=||.|||||.+|-.||++++..- +|+--+||-+.-.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~y--ldTGamYRa~a~~ 45 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHY--LDTGAMYRAVALA 45 (222)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCE--ECCCHHHHHHHHH
T ss_conf 64999768875684789999999809866--6454999999999
No 103
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0041 Score=40.00 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9849999879873344999999988198797
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAII 39 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~II 39 (133)
+.++|+|.||-|+|||.||-.||++++...+
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 6608998446446878999999988388502
No 104
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=96.37 E-value=0.0018 Score=42.15 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=42.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHH
Q ss_conf 99987987334499999998819-----8797500442116822242346768742340433144513765589999999
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRY 87 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~ 87 (133)
++|+|+-|||||..|-+|+++++ ++=|-.|...== +==..+-+|+| .+++ .-..|++.
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yieGDdLHP~--------~Ni~KMs~GiP--------L~Dd-DR~pWL~~ 63 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYIEGDDLHPA--------ANIEKMSRGIP--------LNDD-DRWPWLKN 63 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH--------HHHHHHCCCCC--------CCCC-CCHHHHHH
T ss_conf 9676027862889999999985431578875688666787--------77987317888--------8701-20437999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999984
Q 537021.9.peg.8 88 AIKKIAEVQK 97 (133)
Q Consensus 88 a~~~i~~i~~ 97 (133)
+.........
T Consensus 64 l~~~~~~~~~ 73 (175)
T TIGR01313 64 LADALAQAAA 73 (175)
T ss_pred HHHHHHHHHH
T ss_conf 9999999984
No 105
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0041 Score=39.98 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9999879873344999999988198797500
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
-|+|+||.|||||.+|-.||++++..=||.|
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTG 32 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 7999899999889999999997699785522
No 106
>PRK06526 transposase; Provisional
Probab=96.33 E-value=0.0033 Score=40.52 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=28.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH---CCCEEEECCHHHHHCCCCCCC
Q ss_conf 49999879873344999999988---198797500442116822242
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHK---FNGAIINADSMQVYDTLRILT 54 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~---~~~~IIs~DS~QvYk~l~IgT 54 (133)
.=++++||||+|||.||++|+.. -|-.+.=...-+.-..|....
T Consensus 99 ~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~ 145 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH 145 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH
T ss_conf 87899899998689999999999998699679987799999999988
No 107
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.31 E-value=0.0045 Score=39.71 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCC
Q ss_conf 849999879873344999999988198797500442116822
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLR 51 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~ 51 (133)
+-+|.|=||.|||||.+|-.||++++.. -+|+=.+||-+.
T Consensus 34 ~iIIAIDGPAGSGKSTVAk~lA~~LG~~--yLDTGAmYRava 73 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQ--CLNTGSFYRAFT 73 (863)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCE--EECCCHHHHHHH
T ss_conf 8899986898678899999999982995--887488999999
No 108
>PRK08181 transposase; Validated
Probab=96.28 E-value=0.0037 Score=40.27 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH---CCCEEEECCHHHHHCCCCCCCCCCC
Q ss_conf 849999879873344999999988---1987975004421168222423467
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHK---FNGAIINADSMQVYDTLRILTSRPS 58 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~---~~~~IIs~DS~QvYk~l~IgTaKps 58 (133)
..=++++||||+|||.||+.|+.. -|-.+.=...-..-..|...-+..+
T Consensus 106 ~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~~ 157 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQ 157 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 8708998999987889999999999987993999789999999999775583
No 109
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0048 Score=39.54 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCC
Q ss_conf 99998798733449999999881987975004421168
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDT 49 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~ 49 (133)
+|.|.||-|||||.+|-.||+.++-+.||+- -+||+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG--~iFR~ 37 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAG--TIFRE 37 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEECC--HHHHH
T ss_conf 7996179999702799999998297156212--79999
No 110
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.25 E-value=0.0061 Score=38.93 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=31.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH--HHHC
Q ss_conf 4999987987334499999998819879750044--2116
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSM--QVYD 48 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~--QvYk 48 (133)
.+|.|+|..|||||.++--+. .+|..++++|.. ++|+
T Consensus 3 ~~IgiTG~igsGKStv~~~l~-~~G~~vidaD~i~~~l~~ 41 (199)
T PRK00081 3 LIIGLTGGIGSGKSTVANIFA-ELGVPVIDADKIAHQVLE 41 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCCEEEHHHHHHHHHH
T ss_conf 899957888777999999999-889939963799999997
No 111
>PRK09087 hypothetical protein; Validated
Probab=96.24 E-value=0.0073 Score=38.44 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 89849999879873344999999988198797500
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
...+.++|.||.|||||.|+-.++++.++.++.+.
T Consensus 42 w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~ 76 (226)
T PRK09087 42 WPSPVVVLAGPVGSGKTHLASIWREKADALLVHPN 76 (226)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 77775899899999886999999998099683668
No 112
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.20 E-value=0.0087 Score=38.01 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=39.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCC----CCCCHH
Q ss_conf 589849999879873344999999988198797500442116822242----346768
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILT----SRPSDQ 60 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgT----aKps~~ 60 (133)
..+.++++|.|.||||||.+-..|++. |..+|..-.+.--||=--|. .+||.+
T Consensus 124 ~~~~~~~vl~G~TG~GKT~iL~~L~~~-G~qviDLEglAnHRGS~FG~~~~~~QPsQk 180 (311)
T TIGR03167 124 PQPFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHRGSSFGALGLGPQPSQK 180 (311)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 546876998788887789999999976-997425899863146534688889997899
No 113
>KOG0733 consensus
Probab=96.20 E-value=0.044 Score=33.74 Aligned_cols=107 Identities=9% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHH----HHCCCEE-EECCEECC---CCCCCH
Q ss_conf 849999879873344999999988198797500442116822242346768----7423404-33144513---765589
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQ----DMQSIPH-YLYGYVPA---QKSYST 81 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~----e~~~v~H-~lid~~~~---~e~~sv 81 (133)
++=+++-||-|+|||.||.++|.+++.+.++.-+--+--|+.=-|-|--.| -....|+ -++|.+|. ..++--
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq 302 (802)
T KOG0733 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ 302 (802)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 97516448998647899999752128854851414653155752289999999987366975998511001364404578
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCH
Q ss_conf 99999999999999841000001332598559988930
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTL 119 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTg 119 (133)
.+. -+.+..+...-...-...-.+|...++.|-|.
T Consensus 303 reM---ErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733 303 REM---ERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred HHH---HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 899---99999999985100256666899769982478
No 114
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.18 E-value=0.0071 Score=38.53 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=31.1
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 05898499998798733449999999881-----98797500442
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
+..+.-+|.+.|+-|||||.+|.+|.++| ..+++-.|-+.
T Consensus 15 ~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDnvR 59 (187)
T TIGR00455 15 NKHRGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVLDGDNVR 59 (187)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEE
T ss_conf 279738985116885635799999999999669749997586342
No 115
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.17 E-value=0.0025 Score=41.26 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=41.4
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHH
Q ss_conf 10058984999987987334499999998819879750044211682224234676874234043314451376558999
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGK 83 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~ 83 (133)
-+...+.=+|++.||||||||.-=-.+-.++|-. +.--|.|=-=+.|-...-+-=+|.-.+.. +....
T Consensus 121 ~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~----------~~~HIiTIEDPIEyvh~~~~sli~QREvG--~DT~s 188 (350)
T TIGR01420 121 ELAERPRGLILVTGPTGSGKSTTLASMIDYINKN----------KAGHIITIEDPIEYVHKNKRSLINQREVG--LDTLS 188 (350)
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC----------CCCCCEEEECCEEEEECCCEEEEECCCCC--CCHHH
T ss_conf 9983669938987688986789999999787403----------88882563177314104770245436246--75457
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 537021.9.peg.8 84 WLRYAIKKIA 93 (133)
Q Consensus 84 f~~~a~~~i~ 93 (133)
|.+..+.++.
T Consensus 189 F~~ALraALR 198 (350)
T TIGR01420 189 FANALRAALR 198 (350)
T ss_pred HHHHHHHHHC
T ss_conf 9999768410
No 116
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.0061 Score=38.93 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHH
Q ss_conf 8984999987987334499999998819-----87975004421
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQV 46 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~Qv 46 (133)
..-.-|+++||||+|||.-.-.||-++- ..+|..|...+
T Consensus 239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRI 282 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI 282 (436)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 41717999899998889999999999861698089998066347
No 117
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.11 E-value=0.0068 Score=38.65 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 999879873344999999988198797500
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
|+++||-||||+..|-.||++++...||+-
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is~g 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 899899999879999999999798467688
No 118
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.08 E-value=0.0047 Score=39.61 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=31.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHH
Q ss_conf 99987987334499999998819879750044211
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSMQVY 47 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvY 47 (133)
+++.||-|+|||.+|-.+|++++.++++++.-++.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~ 35 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELV 35 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 98789999999999999999978985332420122
No 119
>PRK02496 adk adenylate kinase; Provisional
Probab=96.07 E-value=0.0082 Score=38.15 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 849999879873344999999988198797500
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
.|+ +++||.||||+..|-.||++++...||+-
T Consensus 2 ~ri-illG~PGSGKgTqa~~L~~~~~~~his~G 33 (185)
T PRK02496 2 ARL-IFLGPPGAGKGTQAVVLAEHLQIPHISTG 33 (185)
T ss_pred EEE-EEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 189-99799999989999999999699778888
No 120
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.07 E-value=0.0091 Score=37.88 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=34.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECC
Q ss_conf 984999987987334499999998819879750044211682224234676874234043314
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYG 71 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid 71 (133)
..++|+|.||.|+|||.|.-.|-++.+-.++.+=|. |-+|. |..+..|+++.
T Consensus 1 mG~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~---------tTRp~--e~~g~dy~fvs 52 (184)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY---------ITRPA--SAGSENHIALS 52 (184)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEE---------CCCCC--CCCCCCCEECC
T ss_conf 970999989986999999999984489988999872---------37899--99996828879
No 121
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=96.07 E-value=0.0086 Score=38.04 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH--HHHCCCCCCCCCCCHHHHCCC-EEEECCEECCCCCCCHHHH
Q ss_conf 999987987334499999998819879750044--211682224234676874234-0433144513765589999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSM--QVYDTLRILTSRPSDQDMQSI-PHYLYGYVPAQKSYSTGKW 84 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~--QvYk~l~IgTaKps~~e~~~v-~H~lid~~~~~e~~sv~~f 84 (133)
+|.|.|.-|||||.++--+. .+|..++++|.. ++|+ |..+....+ .+..-++++++...+-..-
T Consensus 2 iIgiTG~IgsGKStv~~~l~-~~G~~vidaD~i~~~l~~--------~~~~~~~~i~~~fg~~i~~~~g~idr~~L 68 (179)
T pfam01121 2 IVGLTGGIGSGKSTVANLFA-DLGVPIVDADVIARQVVE--------PGSPALAAIVDHFGPDILLADGQLDRRAL 68 (179)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCCEEECHHHHHHHHH--------CCHHHHHHHHHHHCHHHCCCCCCCCHHHH
T ss_conf 89985786478999999999-879919918099999986--------58589999999819986077886579999
No 122
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=96.05 E-value=0.0053 Score=39.28 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCCH----HHHCCCEEEECCEE
Q ss_conf 98499998798733449999999881---9879750044211682224234676----87423404331445
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPSD----QDMQSIPHYLYGYV 73 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps~----~e~~~v~H~lid~~ 73 (133)
+..=+++.||+|+|||.||.+++.+. +..+.-.-.-.....+...-+..+. .....++--.+|-+
T Consensus 46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~l~~~~~~dlLIiDDl 117 (178)
T pfam01695 46 QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDGRLARTLQRLAKADLLILDDI 117 (178)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHH
T ss_conf 587689989999878999999999999869859999616799999987526749999999625897887200
No 123
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.05 E-value=0.0066 Score=38.74 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9998798733449999999881987975
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIIN 40 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs 40 (133)
+++.||+|+|||.++-.+|+.++.+.+.
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~ 29 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRR 29 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8789899876999999999995998168
No 124
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=96.03 E-value=0.0043 Score=39.85 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99987987334499999998819
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~ 35 (133)
=+|+|+||||||.|+-.+=+.++
T Consensus 152 GLiCG~TGSGKSTl~AaiY~~~l 174 (374)
T TIGR02525 152 GLICGETGSGKSTLAAAIYRHCL 174 (374)
T ss_pred EEECCCCCCCHHHHHHHHHHHHC
T ss_conf 02217789728999999999850
No 125
>PRK13768 GTPase; Provisional
Probab=96.03 E-value=0.01 Score=37.51 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 8499998798733449999999881-----98797500442
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
+-.++++||-|||||.+.-.+.+.+ +..|||.|.--
T Consensus 2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~ 42 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 71899989999988999999999999769975999789866
No 126
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.01 E-value=0.0079 Score=38.26 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH--HHH
Q ss_conf 999987987334499999998819879750044--211
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSM--QVY 47 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~--QvY 47 (133)
+|.|.|.-|||||.++-.+. +++.+++++|.. ++|
T Consensus 1 iigiTG~igSGKStv~~~l~-~~g~~v~~aD~i~~~l~ 37 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLK-ELGIPVIDADKIAHEVY 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHH-HCCCEEEECHHHHHHHH
T ss_conf 98863787578999999999-87990996359999988
No 127
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=96.00 E-value=0.0043 Score=39.85 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=31.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 999879873344999999988198797500442116822242346768742
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQ 63 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~ 63 (133)
|+|.|...||||++|-.||...+..+ .-|.|++|..+|+.
T Consensus 1 iLVtGG~rSGKS~~AE~la~~~~~~~-----------~YiAT~~~~D~Em~ 40 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLALASGGPV-----------VYIATAQAFDDEMA 40 (166)
T ss_pred CEEECCCCCCHHHHHHHHHHHCCCCE-----------EEEECCCCCCHHHH
T ss_conf 98868877338999999998559981-----------99976988888999
No 128
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.99 E-value=0.0084 Score=38.08 Aligned_cols=42 Identities=33% Similarity=0.382 Sum_probs=36.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCC
Q ss_conf 89849999879873344999999988198797500442116822
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLR 51 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~ 51 (133)
..-+||.|=||.|||||.+|-.||++++.. -.|+=.+||.+.
T Consensus 440 ~~~pIIaIDGpagsGKsT~ak~lA~~l~~~--yldTG~~YRa~a 481 (662)
T PRK11860 440 ARIPVICIDGPTASGKGTLAAAVAQALGYH--YLDSGALYRLTA 481 (662)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EECCCHHHHHHH
T ss_conf 678789965787568689999999995996--762539999999
No 129
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.007 Score=38.58 Aligned_cols=38 Identities=29% Similarity=0.492 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH----CC---CEEEECCHHHH
Q ss_conf 9849999879873344999999988----19---87975004421
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK----FN---GAIINADSMQV 46 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~----~~---~~IIs~DS~Qv 46 (133)
..-++.++||||+|||.---+||-+ .+ ...|..|+..|
T Consensus 347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRi 391 (557)
T PRK12727 347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 391 (557)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 076478743777673117999999999973998189997266408
No 130
>PRK03839 putative kinase; Provisional
Probab=95.97 E-value=0.013 Score=36.89 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 999987987334499999998819879750044
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSM 44 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~ 44 (133)
+|+|.|+-|+|||.+|-.||++++..+|++-..
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg~~~i~v~~l 34 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLGYEYVNLRDF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEEHHHH
T ss_conf 899978999998999999999769879879999
No 131
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.95 E-value=0.029 Score=34.86 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9849999879873344999999988198
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
..+.++|.||+|||||.|...++.+...
T Consensus 37 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8886999899999889999999999862
No 132
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.93 E-value=0.023 Score=35.46 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHH
Q ss_conf 89849999879873344999999988198797500442116822242346768742340433144513765589999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRY 87 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~ 87 (133)
...+=|+++|.-|+|||.++-.||++++.+-|-.|.. .|+.. ...+-+..+.+--..|++.
T Consensus 131 ~~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~~--------------IEk~a-----G~sI~eIFa~~GE~~FR~~ 191 (304)
T PRK08154 131 ARRPRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE--------------IEREA-----GLSVSEIFALYGQEGYRRL 191 (304)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHH--------------HHHHH-----CCCHHHHHHHHCHHHHHHH
T ss_conf 7778479889999988899999999959897787799--------------99992-----9999999998688999999
Q ss_pred HHHHHHHHHHHHCHHHHHHHCCCEEEEECCCH
Q ss_conf 99999999841000001332598559988930
Q 537021.9.peg.8 88 AIKKIAEVQKTVFTYNSRWDRSLFSCINRSTL 119 (133)
Q Consensus 88 a~~~i~~i~~~~~~~~~~~~r~~~piivGGTg 119 (133)
-.+.++++... ++...|-+||.-
T Consensus 192 E~~~L~~ll~~---------~~~~VIAtGGGi 214 (304)
T PRK08154 192 ERRALERLIAE---------HEEMVLATGGGI 214 (304)
T ss_pred HHHHHHHHHHC---------CCCEEEEECCCC
T ss_conf 99999998711---------699899728721
No 133
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.93 E-value=0.0082 Score=38.17 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=43.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---EEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 9999879873344999999988198---7975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNG---AIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~---~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
+|.|+|.+|||||.++-.+.+.|+. .+|+.||..-| +.+++.. ..+...+|. .++-..+.+..
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~----------dr~~r~~---~~~t~~~P~-And~dll~~~l 66 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSL----------DRKGRKE---TGITALDPR-ANNFDLMYEQL 66 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC----------CHHHHHH---HCCCCCCCC-HHHHHHHHHHH
T ss_conf 989978887869999999999858487699965777889----------9899987---187768975-23499999999
Q ss_pred HHHH
Q ss_conf 9999
Q 537021.9.peg.8 89 IKKI 92 (133)
Q Consensus 89 ~~~i 92 (133)
....
T Consensus 67 ~~Lk 70 (273)
T cd02026 67 KALK 70 (273)
T ss_pred HHHH
T ss_conf 9998
No 134
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=95.91 E-value=0.01 Score=37.54 Aligned_cols=93 Identities=19% Similarity=0.155 Sum_probs=59.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCC-HHHHCCCEEEECCEECCCCCCCHHHHHHHHH
Q ss_conf 499998798733449999999881987975004421168222423467-6874234043314451376558999999999
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPS-DQDMQSIPHYLYGYVPAQKSYSTGKWLRYAI 89 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps-~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~ 89 (133)
+.++|.|+--||||..|-.||...++.+ +-|.|++|. .|.+.+|.||-= .-|..=.++..+... .
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v-----------~YvAT~~a~D~Em~~RI~~Hr~--rRp~~W~tvE~~~~l-~ 66 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQV-----------LYVATGRAFDDEMQERIAHHRA--RRPEHWRTVEAPLDL-A 66 (175)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCE-----------EEEEECCCCCHHHHHHHHHHHH--CCCCCCEEEECCCCH-H
T ss_conf 9089856866774189999998518964-----------9998067788789999999985--688765688644438-9
Q ss_pred HHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCC
Q ss_conf 999999841000001332598559988930899998418
Q 537021.9.peg.8 90 KKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCN 128 (133)
Q Consensus 90 ~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~ 128 (133)
..++... .+.-+++|-.=++++..+++.
T Consensus 67 ~~L~~~~-----------~~~~~VLvDcLt~wvtNll~~ 94 (175)
T COG2087 67 TLLEALI-----------EPGDVVLVDCLTLWVTNLLFA 94 (175)
T ss_pred HHHHHCC-----------CCCCEEEEECHHHHHHHHHHC
T ss_conf 9987444-----------679879997588999998745
No 135
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=95.88 E-value=0.0067 Score=38.69 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=40.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH----HHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCE
Q ss_conf 89849999879873344999999----988198797500442116822242346768742340
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNL----AHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIP 66 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~L----A~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~ 66 (133)
.+.++++|.|+.|||||.||++- +++--.|-+|.=++|.-..+ .||..+...+++
T Consensus 24 P~~klvViTGvSGSGKSSLAFDTlyAEGQRrY~EslS~YaRqfl~~~----~kP~VD~I~GLs 82 (944)
T PRK00349 24 PRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQM----DKPDVDSIEGLS 82 (944)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC----CCCCCCEECCCC
T ss_conf 79988999889888689999887888787888854439999873579----999958664989
No 136
>PRK06762 hypothetical protein; Provisional
Probab=95.83 E-value=0.014 Score=36.77 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=51.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC--CCEEEECCHH--HHHCCCCCCCCCCCHHHHCCCEEEECCEECC---CCCCCH
Q ss_conf 98499998798733449999999881--9879750044--2116822242346768742340433144513---765589
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF--NGAIINADSM--QVYDTLRILTSRPSDQDMQSIPHYLYGYVPA---QKSYST 81 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~--~~~IIs~DS~--QvYk~l~IgTaKps~~e~~~v~H~lid~~~~---~e~~sv 81 (133)
.+++|+|=|..|||||.+|-+|-+++ +.-.||=|-+ -+-++=|-- +-++..-....-.+.++.++. .--+++
T Consensus 1 mt~LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQD~vRR~mLr~kD~~-g~~~i~Li~~~~~yg~~~~~~VIlEGIL~a 79 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGP-GNLSIDLIEQLVRYGLQHCEFVILEGILNS 79 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEECCH
T ss_conf 9528999788888878999999998688857853758999984055779-997868999999999856998999741004
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q 537021.9.peg.8 82 GKWLRYAIKKIAEV 95 (133)
Q Consensus 82 ~~f~~~a~~~i~~i 95 (133)
..|-......++..
T Consensus 80 ~~Yg~ml~~l~~~~ 93 (166)
T PRK06762 80 DRYGPMLKELIHLF 93 (166)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 48999999999865
No 137
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.83 E-value=0.044 Score=33.77 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=35.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCC
Q ss_conf 5898499998798733449999999881---9879750044211682224
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRIL 53 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~Ig 53 (133)
++..+=+++.||||+|||-||..+|+.+ +-.++=.-+.++...+.-.
T Consensus 180 ~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~ 229 (330)
T PRK06835 180 DKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREI 229 (330)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_conf 78888669889999988999999999999879949996299999999997
No 138
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.80 E-value=0.017 Score=36.32 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=49.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH--HHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 8499998798733449999999881987975004--4211682224234676874234043314451376558999999
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADS--MQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS--~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
..+|.++|--|||||.+|--+++ +|..+|++|. +|+|..= ++.-..-+.+++.++++.+-..+...-.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~-------~~~~~~i~~~fG~~i~~~dg~~~r~~L~~ 72 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPG-------GEALQEIAERFGLEILDEDGGLDRRKLRE 72 (201)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEECCHHHHHHHHCC-------CHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 64999957887788999999997-7993998869999988456-------35789999984997656651058999999
No 139
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.80 E-value=0.0083 Score=38.13 Aligned_cols=28 Identities=36% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9849999879873344999999988198
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
..+-|+|+|||+||||.+.-.|+..++-
T Consensus 24 ~~~nIlIsG~tGSGKTTll~al~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5998999899999899999999961334
No 140
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=95.80 E-value=0.011 Score=37.38 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=33.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCC
Q ss_conf 499998798733449999999881987975004421168222
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRI 52 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~I 52 (133)
-+|.|=||.|||||.+|-.||++++.. =+|+=.+||-+.-
T Consensus 5 iiIAIDGPagsGKSTvak~lA~~Lg~~--yLDTGamYRava~ 44 (714)
T PRK09518 5 IIVAIDGPAGVGKSSVSRALAQYFGYA--YLDTGAMYRACAW 44 (714)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCE--EECCCHHHHHHHH
T ss_conf 899977898658999999999994991--8870299999999
No 141
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.78 E-value=0.012 Score=37.24 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 999879873344999999988198797500
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
|+|+||-||||+..|-.||++++...||+-
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~is~G 32 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTG 32 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 999899999879999999998699178688
No 142
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=95.77 E-value=0.014 Score=36.77 Aligned_cols=44 Identities=25% Similarity=0.284 Sum_probs=31.5
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCC--CEEEECCHHHHHCCCCCCCC
Q ss_conf 058984999987987334499999998819--87975004421168222423
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFN--GAIINADSMQVYDTLRILTS 55 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~--~~IIs~DS~QvYk~l~IgTa 55 (133)
-..-..-+.|+||||.|||.|-.-|.+-+. ..-|+.| |.||-|=
T Consensus 357 ~~KAG~TvAIVGPTGAGKTTLiNLLQRVydP~~G~I~ID------G~~I~~v 402 (592)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPKVGQILID------GIDINTV 402 (592)
T ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC------CEEHHHH
T ss_conf 652475689877899717899887753106986548872------4240010
No 143
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.77 E-value=0.0086 Score=38.05 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99987987334499999998819
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~ 35 (133)
+++.||+|+|||.+|-.+|+.+.
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~ 24 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALS 24 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 89998997569999999999807
No 144
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.76 E-value=0.018 Score=36.07 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=36.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCC
Q ss_conf 898499998798733449999999881987975004421168
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDT 49 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~ 49 (133)
..||=+++.||-|+|||-||-++|...++..++++.-++...
T Consensus 164 ~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk 205 (390)
T PRK03992 164 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 205 (390)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 999727868989997899999999874888799667997524
No 145
>PRK08727 hypothetical protein; Validated
Probab=95.75 E-value=0.043 Score=33.82 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 984999987987334499999998819
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
....++|.||+|||||.|+..++....
T Consensus 40 ~~~~lyl~G~~GsGKTHLl~a~~~~~~ 66 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALSLCAAAE 66 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 889899989999988999999999998
No 146
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.72 E-value=0.0093 Score=37.83 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 849999879873344999999988198
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
++=|+|+|+|+||||.|.-.|+..++.
T Consensus 160 r~NilI~G~TgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 871999888898899999999835895
No 147
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.69 E-value=0.02 Score=35.82 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCC-----HHHHCCCEEEECCEEC
Q ss_conf 898499998798733449999999881987975004421168222423467-----6874234043314451
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPS-----DQDMQSIPHYLYGYVP 74 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps-----~~e~~~v~H~lid~~~ 74 (133)
..||=+++.||-|+|||-+|-++|...+.+.+++|.-.++..+-=-|.|-- ..+...----++|.+|
T Consensus 257 ~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~~vGesE~~~r~~f~~A~~~aP~ilfiDEid 328 (491)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGGIVGESESRMRQMIQLAETISPCILWIDEID 328 (491)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEHHH
T ss_conf 999879997999987899999998663894699667997560067049999999999986198589974654
No 148
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.69 E-value=0.026 Score=35.16 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=48.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99987987334499999998819879750044211682224234676874234043314451376558999999999999
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKKI 92 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~i 92 (133)
|+++|+-|||||.++-.||++++.+-+-.|.. .|++ ....+-+..+.+-=..|++.-.+.+
T Consensus 3 I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~~--------------Ie~~-----~G~sI~eIF~~~GE~~FR~~E~~~l 63 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRISEVLDLQFIDMDEE--------------IERR-----EGRSVRRIFEEDGEEYFRLKEKELL 63 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECHHH--------------HHHH-----HCCCHHHHHHHHCHHHHHHHHHHHH
T ss_conf 99989999987799999999839795647799--------------9998-----5998889998878899999999999
Q ss_pred HHHHH
Q ss_conf 99984
Q 537021.9.peg.8 93 AEVQK 97 (133)
Q Consensus 93 ~~i~~ 97 (133)
.+...
T Consensus 64 ~~l~~ 68 (488)
T PRK13951 64 RELVE 68 (488)
T ss_pred HHHHC
T ss_conf 99860
No 149
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.67 E-value=0.0095 Score=37.77 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999879873344999999988198797
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAII 39 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~II 39 (133)
+|+|-|+-|||||.|+-.||++++...+
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9899678567999999999998598210
No 150
>PRK04182 cytidylate kinase; Provisional
Probab=95.66 E-value=0.017 Score=36.18 Aligned_cols=37 Identities=38% Similarity=0.554 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCC
Q ss_conf 999987987334499999998819879750044211682
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTL 50 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l 50 (133)
+|.|.||.|||||.+|-.||++++.+.++.. -+|+++
T Consensus 2 ~ItI~g~~GSGk~tIak~LA~~lg~~~~d~g--~i~r~~ 38 (178)
T PRK04182 2 RITISGPPGSGKTTVARLLAEKLGLKLVSAG--DIFREL 38 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHH--HHHHHH
T ss_conf 8999589988879999999999599387212--999999
No 151
>pfam07475 Hpr_kinase_C HPr Serine kinase C-terminal domain. This family represents the C terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller.
Probab=95.66 E-value=0.014 Score=36.75 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=60.3
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCC-CCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHH
Q ss_conf 005898499998798733449999999881987975004421168-2224234676874234043314451376558999
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDT-LRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGK 83 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~-l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~ 83 (133)
++.-...=++|.|+.++|||++|++|-++ +...|+=|...+++- =+...+++++--+.-..-..+++++..+-|-+..
T Consensus 13 lv~v~G~GVLi~G~sgiGKSe~aLeLi~r-Gh~LVaDD~v~~~~~~~~~l~G~~p~~~~~~lEvRGlGiidV~~lfG~~a 91 (171)
T pfam07475 13 LVDVYGVGVLITGESGIGKSETALELIKR-GHRLVADDAVEIKRIGEKTLVGRAPEILRHFLEVRGLGIINVRALFGAGA 91 (171)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHHC-CCEEEECCEEEEEEECCCEEEEECCHHHHHHHHHCCCCEEEHHHHCCHHH
T ss_conf 99982779999858999877999999982-99088067389999369989997986874177545884885447248666
Q ss_pred HHH
Q ss_conf 999
Q 537021.9.peg.8 84 WLR 86 (133)
Q Consensus 84 f~~ 86 (133)
.++
T Consensus 92 vr~ 94 (171)
T pfam07475 92 VRD 94 (171)
T ss_pred EEC
T ss_conf 135
No 152
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.63 E-value=0.0091 Score=37.87 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH----HHHCCCEEEECCHHH-HHCCC
Q ss_conf 89849999879873344999999----988198797500442-11682
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNL----AHKFNGAIINADSMQ-VYDTL 50 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~L----A~~~~~~IIs~DS~Q-vYk~l 50 (133)
.+.|+++|.|+.|||||.||++. +++--.|-+|+=++| +.+.+
T Consensus 959 PrnkLvViTGvSGSGKSSLAFDTLyAEGQRRY~ESlS~YaRQ~fl~~~ 1006 (1809)
T PRK00635 959 PRNALTAITGPSASGKHSLVFDILYAAGNIAYAELFPPYIRQALIKKT 1006 (1809)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
T ss_conf 798669997898886899999889999999998641599997751158
No 153
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.62 E-value=0.014 Score=36.82 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.6
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 05898499998798733449999999881987975004
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
-+.+.+=+++.||-|+|||.+|.-||+.++.+.+...+
T Consensus 33 ~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA 70 (417)
T PRK13342 33 EAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSA 70 (417)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 76999759988969998999999999986898899614
No 154
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.57 E-value=0.13 Score=30.94 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCEEEECC
Q ss_conf 99998798733449999999881---98797500
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF---NGAIINAD 42 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~---~~~IIs~D 42 (133)
++.|.||+++|||.|++.+|... +..++-+|
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9899989999899999999999876399799998
No 155
>KOG1942 consensus
Probab=95.53 E-value=0.015 Score=36.64 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9849999879873344999999988198
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
..+.++++||-++|||+||+.+++.++.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942 63 AGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6727997369987656899999997479
No 156
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=95.52 E-value=0.014 Score=36.79 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=42.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCE-------------EEECC-HHHHHCCCCCCCCCCCHHHHCCCEE-E--ECCEE
Q ss_conf 499998798733449999999881987-------------97500-4421168222423467687423404-3--31445
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGA-------------IINAD-SMQVYDTLRILTSRPSDQDMQSIPH-Y--LYGYV 73 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~-------------IIs~D-S~QvYk~l~IgTaKps~~e~~~v~H-~--lid~~ 73 (133)
|.+.|+||-.||||.|+-+||+.+|+. -+.=| ++|.-..-.|.+++-..++.. ++| + -|=++
T Consensus 176 k~V~ilG~eStGKstLv~~lA~~~nt~~~~Eyar~y~e~~~ggDe~~L~~~dY~~~~~G~~~~~~~~-v~~a~nq~v~f~ 254 (346)
T TIGR01526 176 KTVAILGGESTGKSTLVNKLAEKLNTTSAWEYAREYVEAKLGGDEIALQYSDYARIVLGQIDYIDAA-VRDADNQKVAFI 254 (346)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHH-HCCCCCCEEEEE
T ss_conf 5888855888636899999999846887125655666651687214542034378764246677786-307323747898
Q ss_pred C
Q ss_conf 1
Q 537021.9.peg.8 74 P 74 (133)
Q Consensus 74 ~ 74 (133)
|
T Consensus 255 D 255 (346)
T TIGR01526 255 D 255 (346)
T ss_pred E
T ss_conf 4
No 157
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.52 E-value=0.016 Score=36.44 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.4
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 005898499998798733449999999881987
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.-+.+.+|++++||-|+|||.|+-.+|+.+|-.
T Consensus 344 ~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~ 376 (784)
T PRK10787 344 VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 246778779964699877246999999985898
No 158
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.52 E-value=0.017 Score=36.32 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 898499998798733449999999881987
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
....+++|.||||||||.+=-+++-.+-|+
T Consensus 28 ~~~gLFlI~G~TGAGKSTIlDAItfALYG~ 57 (1047)
T PRK10246 28 ASNGLFAITGPTGAGKTTLLDAICLALYHE 57 (1047)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 668878888999998899999999995899
No 159
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.50 E-value=0.043 Score=33.79 Aligned_cols=91 Identities=9% Similarity=0.056 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEE-EECCEECCCCCCCH
Q ss_conf 8984999987987334499999998819-----87975004421168222423467687423404-33144513765589
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQVYDTLRILTSRPSDQDMQSIPH-YLYGYVPAQKSYST 81 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H-~lid~~~~~e~~sv 81 (133)
.....++|.||+|+|||.|..+++.+.. ...+++|. ... -.++...+..+ -++-+=|...--.-
T Consensus 43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~---------~~~-~~~~~l~~l~~~dll~iDDi~~i~g~ 112 (235)
T PRK08084 43 EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK---------RAW-FVPEVLEGMEQLSLVCIDNIECIAGD 112 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH---------HHH-HHHHHHHHHHHCCEEEEECHHHHCCC
T ss_conf 89876999899998889999999999970798579987798---------665-17999987641898998274554699
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCC
Q ss_conf 9999999999999984100000133259855998893
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRST 118 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGT 118 (133)
..|++..-..+..... .++..+++.+.
T Consensus 113 ~~~ee~lF~l~N~~~~----------~g~~~ll~ts~ 139 (235)
T PRK08084 113 ELWEMAIFDLYNRILE----------SGKTRLLITGD 139 (235)
T ss_pred HHHHHHHHHHHHHHHH----------HCCCEEEEECC
T ss_conf 7899999999999998----------48966999679
No 160
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.50 E-value=0.021 Score=35.64 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=32.8
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 05898499998798733449999999881-----98797500442
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
...++.+|+++|..|||||.||-.|.+++ +..++..|.+.
T Consensus 20 ~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR 64 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVR 64 (198)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 689986999879999988999999999999759975997779998
No 161
>PRK12377 putative replication protein; Provisional
Probab=95.47 E-value=0.013 Score=37.03 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=22.0
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 005898499998798733449999999881
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
|++... =+++.||+|+|||.||++|+.+.
T Consensus 97 F~~~~~-NlIf~G~pGtGKTHLA~AIg~~a 125 (248)
T PRK12377 97 LMTGCT-NFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred HHCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 731886-08998999987889999999999
No 162
>PRK08116 hypothetical protein; Validated
Probab=95.45 E-value=0.085 Score=32.01 Aligned_cols=51 Identities=10% Similarity=0.271 Sum_probs=37.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCC
Q ss_conf 898499998798733449999999881---987975004421168222423467
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPS 58 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps 58 (133)
...+=+++.||+|+|||.||..+|..+ +-.++=.....+...+.-.-++.+
T Consensus 106 ~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~ 159 (262)
T PRK08116 106 KESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEG 159 (262)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 468618998989998999999999999987993999889999999999986356
No 163
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.42 E-value=0.014 Score=36.84 Aligned_cols=28 Identities=25% Similarity=0.403 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9849999879873344999999988198
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
.++=|+|+|+|+||||.|...|...++.
T Consensus 161 ~r~NIlIsGgTGSGKTTllnALl~~IP~ 188 (343)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (343)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 6988999888986199999999962896
No 164
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.37 E-value=0.018 Score=36.16 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=25.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 5898499998798733449999999881
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...++|+++.||.|||||.|+-.|-+.+
T Consensus 75 ~~~k~IllL~GPvGsGKStl~~~Lk~~l 102 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7125699998899887799999999999
No 165
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.37 E-value=0.02 Score=35.77 Aligned_cols=29 Identities=28% Similarity=0.600 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
..+-+++.||.|+|||.+|..+|+.+.++
T Consensus 36 ~~phlLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 36 NMPHLLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 98669888959988999999999997698
No 166
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=95.35 E-value=0.051 Score=33.36 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 58984999987987334499999998819879750044211682224234676874234043314451376558999999
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
..+|-++..-||||+||+-+|--||+.+--. ......-|+++...+-...-.+..|.+
T Consensus 50 p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~----------------------G~~S~~Vh~fi~~~hFPh~~~v~~YK~ 107 (127)
T pfam06309 50 PRKPLVLSFHGWTGTGKNFVAEIIADNLYRD----------------------GLRSPYVHHFVATNHFPHPKYVELYKV 107 (127)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC----------------------CCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 9997488701899987989999999998754----------------------347875688424224897688999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999984
Q 537021.9.peg.8 87 YAIKKIAEVQK 97 (133)
Q Consensus 87 ~a~~~i~~i~~ 97 (133)
...++|...-.
T Consensus 108 ~L~~~I~~~v~ 118 (127)
T pfam06309 108 ELKNQIRGTLR 118 (127)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996
No 167
>PRK05642 DNA replication initiation factor; Validated
Probab=95.35 E-value=0.048 Score=33.51 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=41.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCC-C-CHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 984999987987334499999998819879750044211682224234-6-76874234043314451376558999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSR-P-SDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaK-p-s~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
..+.++|.||+|+|||.|..+++.+... .+..-+|-.+.-.... | ..+....+..-.+|-++- --.-.+|++
T Consensus 44 ~~~~l~i~G~~G~GKTHLL~A~~~~~~~----~~~~~~yl~~~~~~~~~~~~~~~l~~~d~l~IDDi~~--i~g~~~~e~ 117 (234)
T PRK05642 44 TESLIYLWGKDGVGRSHLLQAACLRFEQ----RGEPAVYLPLAELLDRGPELLDNLEQYELVCIDDLDV--IAGKADWEE 117 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEECHHH--HCCCHHHHH
T ss_conf 7883899889999889999999999980----7996799789998754499986242279898936455--468859999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999984
Q 537021.9.peg.8 87 YAIKKIAEVQK 97 (133)
Q Consensus 87 ~a~~~i~~i~~ 97 (133)
..-..+..+..
T Consensus 118 ~lF~l~N~~~~ 128 (234)
T PRK05642 118 ALFHLFNRLRD 128 (234)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 168
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=95.34 E-value=0.011 Score=37.32 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH---CCCEEEECCHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 89849999879873344999999988---19879750044211682224234676874234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK---FNGAIINADSMQVYDTLRILTSRPSDQDMQSI 65 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~---~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v 65 (133)
.+++|-+|+||+|||||.|==.|-+- .++.=+..+ =+|.|-||-..+-+..+++.-
T Consensus 25 ~~n~vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G~--v~f~G~dIy~~~~D~~~LR~~ 83 (248)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK--VLFDGQDIYDKKIDVVELRKR 83 (248)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE--EEECCCCCCCCCCCHHHHHHH
T ss_conf 37705898778898678999998877640788168888--986451145656687887622
No 169
>PRK00625 shikimate kinase; Provisional
Probab=95.31 E-value=0.023 Score=35.46 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=50.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHC-CCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHH
Q ss_conf 999879873344999999988198797500442116-8222423467687423404331445137655899999999999
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYD-TLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKK 91 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk-~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~ 91 (133)
|+++|.-|||||.++-.||++++.+-+..|..=.=+ +..+.. |.. +.-+.+--..|++.-.++
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~~~FvD~D~~Ie~~~~~~i~~---Si~-------------eIf~~~GE~~FR~~E~~~ 66 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYS---SPK-------------EIYQAYGEEGFCEEEALA 66 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCC---CHH-------------HHHHHHCHHHHHHHHHHH
T ss_conf 9998999998899999999993999577499999986865235---699-------------999971899999999999
Q ss_pred HHHHHHHHCHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 9999841000001332598559988930899
Q 537021.9.peg.8 92 IAEVQKTVFTYNSRWDRSLFSCINRSTLYYA 122 (133)
Q Consensus 92 i~~i~~~~~~~~~~~~r~~~piivGGTglY~ 122 (133)
+.++.. ....|-+||.-.+-
T Consensus 67 l~~l~~-----------~~~VIstGGG~v~~ 86 (173)
T PRK00625 67 LESLPV-----------IPSIVALGGGTLMH 86 (173)
T ss_pred HHHHCC-----------CCCEEECCCCCCCC
T ss_conf 997324-----------89689748850178
No 170
>PRK06893 DNA replication initiation factor; Validated
Probab=95.28 E-value=0.2 Score=29.75 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCH
Q ss_conf 5898499998798733449999999881-----98797500442116822242346768742340433144513765589
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYST 81 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv 81 (133)
+...+.++|.||.|||||.|.-+++..+ ++.-+.+..-+-+ +..-.+......--.+|-++. --.-
T Consensus 36 ~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~-------~~~~l~~l~~~d~l~iDDi~~--i~g~ 106 (229)
T PRK06893 36 DLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF-------SPAVLENLEQQDLVCLDDLQA--VIGN 106 (229)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC-------CHHHHHHHHHCCEEEEECHHH--HCCC
T ss_conf 2469879998999998899999999999971898599973775640-------699998765479799967234--2488
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECC
Q ss_conf 999999999999998410000013325985599889
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRS 117 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGG 117 (133)
..|.+..-..+..+. ++++..+++.+
T Consensus 107 ~~~e~~lF~l~N~l~----------~~~~~~ll~ss 132 (229)
T PRK06893 107 EEWELAIFDLFNRIK----------ESGKTLLLISA 132 (229)
T ss_pred HHHHHHHHHHHHHHH----------HCCCCEEEEEC
T ss_conf 389999999999999----------75991799857
No 171
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.026 Score=35.11 Aligned_cols=59 Identities=14% Similarity=0.297 Sum_probs=37.8
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 058984999987987334499999998819879750044211682224234676874234043314451
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
-+.+.+|+|++||-|+|||.|+-.+|+.++-+-+ -+..|--+ ...|.+|.+.-.+|-.+
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv---------R~sLGGvr-DEAEIRGHRRTYIGaMP 404 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV---------RISLGGVR-DEAEIRGHRRTYIGAMP 404 (782)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE---------EEECCCCC-CHHHHCCCCCCCCCCCC
T ss_conf 4678857999789988701189999999589779---------99547654-27775355312335687
No 172
>KOG3220 consensus
Probab=95.23 E-value=0.022 Score=35.58 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=42.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH--HHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHH
Q ss_conf 499998798733449999999881987975004--421168222423467687423404331445137655899
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADS--MQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTG 82 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS--~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~ 82 (133)
.++-+.|-+|||||.++-.+- .++.+||.+|. +|+++ .-++.-+.-+..++-+++.++-..|-.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~-------PG~p~~~~ive~FG~eiLl~~G~inR~ 67 (225)
T KOG3220 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVE-------PGTPAYRRIVEAFGTEILLEDGEINRK 67 (225)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCCEECHHHHHHHHHC-------CCCHHHHHHHHHHCCEEECCCCCCCHH
T ss_conf 699940565667379999999-749957627899999855-------998078999998484000568841689
No 173
>KOG2004 consensus
Probab=95.22 E-value=0.019 Score=35.90 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=28.9
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 005898499998798733449999999881987
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.=+.+.||++..||.|+|||.+|-.+|+.+|-+
T Consensus 433 rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004 433 RGSVQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 466788379986899877321899999984874
No 174
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.22 E-value=0.02 Score=35.88 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...+.+.|+||||||||.|+--|++-+
T Consensus 365 ~~Ge~vaiVG~SGsGKSTL~~LL~r~y 391 (575)
T PRK11160 365 KAGEKVALLGRTGCGKSTLLQLLTRAW 391 (575)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699889998899975999999986236
No 175
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.20 E-value=0.031 Score=34.68 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE--EEECCHHH
Q ss_conf 8499998798733449999999881987--97500442
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA--IINADSMQ 45 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~--IIs~DS~Q 45 (133)
.+||++-|++.||||.+|-+|...++.+ -++.|+.-
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 74999868998988999999998476756884185898
No 176
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.19 E-value=0.026 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|.--|..-+
T Consensus 27 ~~G~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 699999999999998999999982386
No 177
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.19 E-value=0.024 Score=35.36 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=35.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCC---CCCCCHH
Q ss_conf 4999987987334499999998819879750044211682224---2346768
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRIL---TSRPSDQ 60 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~Ig---TaKps~~ 60 (133)
+.++|.|+||||||.+-..|++ .|..+|..-.+.--||=--| ..+||.+
T Consensus 138 ~~~vl~G~TG~GKT~lL~~L~~-~G~~viDLEglA~HRGS~FG~~~~~QPsQk 189 (333)
T PRK11784 138 PLVVLGGMTGSGKTRLLQALAN-AGAQVLDLEGLANHRGSSFGRLGGPQPSQK 189 (333)
T ss_pred CCEEEECCCCCCHHHHHHHHHH-CCCCEECHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 8599867888778999999997-599743389886325642358899998789
No 178
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.033 Score=34.53 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=45.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCC-CCC-----HHHHCCCEEEECCEECC
Q ss_conf 898499998798733449999999881987975004421168222423-467-----68742340433144513
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTS-RPS-----DQDMQSIPHYLYGYVPA 75 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTa-Kps-----~~e~~~v~H~lid~~~~ 75 (133)
..++.+++.||-|+|||.||-++|...+...++.+.- -|-.--+|-. |-- ..++..-..-++|.+|.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek~ir~~F~~A~~~~p~iifiDEiDs 346 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
T ss_conf 8883699988999758999999875449824884335-554077659999999999999966998897488666
No 179
>PRK06921 hypothetical protein; Provisional
Probab=95.18 E-value=0.027 Score=35.04 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC----CCEEEECCHHHHHCCCCCCCCC--CCHHHHCCCEEEECCEE--C--CCC
Q ss_conf 898499998798733449999999881----9879750044211682224234--67687423404331445--1--376
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF----NGAIINADSMQVYDTLRILTSR--PSDQDMQSIPHYLYGYV--P--AQK 77 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~----~~~IIs~DS~QvYk~l~IgTaK--ps~~e~~~v~H~lid~~--~--~~e 77 (133)
+...=+++.|++|+|||.||..+|+.+ +..+|-....+...++.=--++ ...+....++--.+|-+ + ..|
T Consensus 114 ~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~~~~~~~~l~~~~~~dlLIIDDLfk~~~G~e 193 (265)
T PRK06921 114 CRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKP 193 (265)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 77662799728989889999999999999629719998879999999988888999999863299999822122347987
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf 558999999-9999999998410000013325985599889308999984
Q 537021.9.peg.8 78 SYSTGKWLR-YAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTY 126 (133)
Q Consensus 78 ~~sv~~f~~-~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~ 126 (133)
. ...|.. ..-.+|..- +. ++.|+|+ .|.+.++.|.
T Consensus 194 ~--~te~~~~~lf~iIN~R----------y~-~~kptIi-SSNl~~~~L~ 229 (265)
T PRK06921 194 R--ATEWQIEQTYSVVNYR----------YL-NHKPILI-SSELTIDELL 229 (265)
T ss_pred C--CCHHHHHHHHHHHHHH----------HH-CCCCEEE-ECCCCHHHHH
T ss_conf 8--9889999999999999----------97-6999899-8689989998
No 180
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=95.18 E-value=0.031 Score=34.70 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 98499998798733449999999881-----98797500442
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
++-+|++.|-.|||||.||-.|.+++ +..++..|-+.
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R 42 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 988999889899999999999999999759977997688775
No 181
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.16 E-value=0.078 Score=32.24 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH--C---CCEEEECCHHHHHCCCCCCCCCCCH
Q ss_conf 89849999879873344999999988--1---9879750044211682224234676
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK--F---NGAIINADSMQVYDTLRILTSRPSD 59 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~--~---~~~IIs~DS~QvYk~l~IgTaKps~ 59 (133)
....++.|+||.|||||.|.-.++-. + .|+| .+.|-+|..-.|..
T Consensus 25 ~~Gei~~iiG~nGaGKSTLl~~i~G~~~~~~~~G~I-------~~~G~~i~~~~~~~ 74 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-------TFKGKDLLELSPED 74 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE-------EECCEECCCCCHHH
T ss_conf 499799999999999999999983775568752359-------99999856489889
No 182
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.16 E-value=0.018 Score=36.12 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...+.++|+||||||||.|.--|++-+
T Consensus 347 ~~Ge~vaiVG~SGsGKSTL~~LL~r~y 373 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 599889998999997799999982896
No 183
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.15 E-value=0.025 Score=35.20 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
...+.+.|+||||||||.|+--|.+-.+
T Consensus 374 ~~Ge~vaIVG~SGsGKSTl~~LL~g~~p 401 (588)
T PRK11174 374 PAGQRVALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 4997899989998649999999987289
No 184
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.14 E-value=0.02 Score=35.84 Aligned_cols=26 Identities=42% Similarity=0.485 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 49999879873344999999988198
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
|.+.|+||-.||||.|+.+||..+|+
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 13556457665717999999999688
No 185
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=95.13 E-value=0.02 Score=35.88 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCC
Q ss_conf 984999987987334499999998819---87975004421168
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDT 49 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~ 49 (133)
..++++|+||||+|||.|=-+++-.+. .+-.|.|+.--|.-
T Consensus 29 sl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~~~~~~~ 72 (1063)
T TIGR00618 29 SLKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVVASKNSL 72 (1063)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 25736777889983545999999987288877514678887542
No 186
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.11 E-value=0.015 Score=36.57 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=20.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 5898499998798733449999999881
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+|+. |+|+|=||||||.|+.+|=.++
T Consensus 137 ~ar~N-Ilv~GGTGSGKTTLaNAlla~I 163 (315)
T TIGR02782 137 AARKN-ILVVGGTGSGKTTLANALLAEI 163 (315)
T ss_pred HHCCC-EEEECCCCCCHHHHHHHHHHHH
T ss_conf 71298-8998145885799999999988
No 187
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.10 E-value=0.027 Score=35.02 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 898499998798733449999999881987
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
...+-+++.||-|+|||.+|..+|+.+.++
T Consensus 34 ~~~phlLf~GPpG~GKTt~A~~lA~~l~~~ 63 (337)
T PRK12402 34 GNLPHLVVYGPSGSGKTAAVRALARELYGD 63 (337)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 998769888929848999999999996799
No 188
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.04 E-value=0.04 Score=34.02 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=49.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHH
Q ss_conf 84999987987334499999998819879750044211682224234676874234043314451376558999999999
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAI 89 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~ 89 (133)
.+-|+++|+-|+|||.++-.||+.++-+-+-.|.. .|++. ...+.+..+.+-=..|++.-.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--------------Ie~~~-----g~sI~eIF~~~GE~~FR~~E~ 62 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--------------IEKRT-----GMSIAEIFEEEGEEGFRRLET 62 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHH--------------HHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 96189971799977689999999819980224699--------------99997-----969999999982899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999984
Q 537021.9.peg.8 90 KKIAEVQK 97 (133)
Q Consensus 90 ~~i~~i~~ 97 (133)
.++.+...
T Consensus 63 ~vl~~l~~ 70 (172)
T COG0703 63 EVLKELLE 70 (172)
T ss_pred HHHHHHHH
T ss_conf 99999862
No 189
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.98 E-value=0.028 Score=34.89 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=35.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHH
Q ss_conf 8984999987987334499999998819879750044211
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVY 47 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvY 47 (133)
--||-++.-||+|+|||-+|-+||.+.+.+++.+-+-++-
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf 5754168778999648799998725457854871168888
No 190
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.97 E-value=0.029 Score=34.88 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+.+.+.|+||||||||.|+--|.+-+.
T Consensus 359 ~~Ge~vaiVG~SGsGKSTL~~LL~gly~ 386 (585)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLHRVFD 386 (585)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5998899988989869999999860157
No 191
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=94.97 E-value=0.022 Score=35.62 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 984999987987334499999998819
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
..+=+.|+||+|||||.|+.-|+.-++
T Consensus 386 ~G~r~Ai~G~SG~GKsTLL~~L~G~l~ 412 (566)
T TIGR02868 386 PGERVAILGPSGSGKSTLLATLAGLLD 412 (566)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 886089866887657899999984028
No 192
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.91 E-value=0.03 Score=34.77 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 99998798733449999999881-----98797500442
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
+|++.|-.|||||.||-.|.+++ +..++..|-+.
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 989879999999999999999999869975997748899
No 193
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.91 E-value=0.031 Score=34.70 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+.+.+.|+||||||||.|.--|.+-+.
T Consensus 339 ~~Ge~vaIVG~SGsGKSTLl~LL~g~y~ 366 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8997899879999987999999997764
No 194
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.90 E-value=0.033 Score=34.53 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=27.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9999879873344999999988198797500
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
-|+++||-||||+..|-.||++++..-||.-
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiStG 32 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHINMG 32 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 7999899999879999999998799068789
No 195
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.89 E-value=0.035 Score=34.32 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHH
Q ss_conf 99998798733449999999---88198797500442
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQ 45 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~Q 45 (133)
=-+|+||||||||.|..-|+ ++++..|+-.|.-+
T Consensus 448 HtlI~G~TGsGKTtl~~fL~aq~~ky~~~~f~fDkd~ 484 (800)
T PRK13898 448 HTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDR 484 (800)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 5699899999899999999999875488799997999
No 196
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.88 E-value=0.047 Score=33.59 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=27.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC---CEEEE
Q ss_conf 8984999987987334499999998819---87975
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN---GAIIN 40 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~---~~IIs 40 (133)
.....+.|+||||||||.+..-|.+-+. |+|.-
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 489878885588885789999998615888836989
No 197
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=94.88 E-value=0.028 Score=34.90 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8499998798733449999999881987
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.|-|+|+||-.||||.|+-+||+.+|+.
T Consensus 231 vKkVvIlG~ESTGKTTL~~~LA~~ynT~ 258 (411)
T PRK08099 231 VRTVAILGGESSGKSTLVNKLANIFNTT 258 (411)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 3689998999888899999999997899
No 198
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.87 E-value=0.035 Score=34.35 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.....+.|+||||||||.|+--|.+-+.
T Consensus 365 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 392 (593)
T PRK10790 365 PSRNFVALVGHTGSGKSTLASLLMGYYP 392 (593)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8997899879998868999999998556
No 199
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=94.87 E-value=0.017 Score=36.30 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=38.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH----HHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 89849999879873344999999----98819879750044211682224234676874234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNL----AHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSI 65 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~L----A~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v 65 (133)
.+.++++|.|+.|||||.||.+- +++--.|=+|+=++|....|+ ||..+...+.
T Consensus 24 P~~~lvViTGvSGSGKSSLAFDTiyAEgqRry~EslS~yaRqfl~~~~----kP~VD~I~GL 81 (1809)
T PRK00635 24 CPREIVLLTGVSGSGKSSLAFDTIYAAGRKRYISTLPSFFATTLSSLP----DPTVEKIHGL 81 (1809)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCEECCC
T ss_conf 699889997998897899998999998988998762899983047999----9994966698
No 200
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.82 E-value=0.076 Score=32.30 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 58984999987987334499999998819
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
...+.=++|.||||+|||..+-.+.+++.
T Consensus 52 g~~~~n~~I~G~pGTGKT~~vk~v~~~l~ 80 (394)
T PRK00411 52 GSRPSNVLILGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99998479988999989999999999999
No 201
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.82 E-value=0.03 Score=34.78 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCE--EEEC
Q ss_conf 9998798733449999999881987--9750
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGA--IINA 41 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~--IIs~ 41 (133)
+++.||-|+|||.||--+|+.++.+ ++|+
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~ 83 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSG 83 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 7887899998889999999840875376142
No 202
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=0.029 Score=34.85 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 98499998798733449999999881987975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
-+.+++..||.|+|||.+|..+|+.++++= ..|. ..|-..-.. ..+.-+|+++.+-..+-+ .+++
T Consensus 39 IaHAYLF~GPRGvGKTT~ARIfAKaLNC~~-~~d~-----------~~pC~~C~~-~~~~s~DViEIDAASn~g--VDdI 103 (718)
T PRK07133 39 ISHAYLFSGPHGTGKTSVAKIFANALNCSH-KTDL-----------IEPCQNCIE-NFNNNLDIIEMDAASNNG--VDEI 103 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCC-----------CCCCCCHHH-CCCCCCCEEEECCCCCCC--HHHH
T ss_conf 750586238998688999999999967999-9999-----------997702143-047898737754556688--8999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 537021.9.peg.8 89 IKKIAEVQ 96 (133)
Q Consensus 89 ~~~i~~i~ 96 (133)
+.+++.+.
T Consensus 104 ReLie~v~ 111 (718)
T PRK07133 104 RELRENVK 111 (718)
T ss_pred HHHHHHHC
T ss_conf 99999825
No 203
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=94.81 E-value=0.031 Score=34.69 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=52.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 98499998798733449999999881987975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
...++++.||+|||||-+|+..|-..=- + .-|+. |.-.||..+- + .=+++++.+.+--..-|..-.
T Consensus 18 ~~~iv~~~GpAGtGKT~la~~~al~~l~-----~--~~~~k--iii~Rp~v~~--g---~~iGfLPG~~~eK~~p~~~p~ 83 (205)
T pfam02562 18 KNDIVFGIGPAGTGKTYLAVAAAVDALK-----D--GKVKR--IILTRPAVEA--G---EKLGFLPGDLEEKVDPYLRPL 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-----H--CCCCE--EEEEECCCCC--C---CCCCCCCCCHHHHHHHHHHHH
T ss_conf 7980799899986099999999999997-----1--89437--9997577125--7---754558897899999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCEEEE
Q ss_conf 99999998410000013325985599
Q 537021.9.peg.8 89 IKKIAEVQKTVFTYNSRWDRSLFSCI 114 (133)
Q Consensus 89 ~~~i~~i~~~~~~~~~~~~r~~~pii 114 (133)
...++++... ......++++++-+.
T Consensus 84 ~d~l~~~~~~-~~~~~l~~~~~Ie~~ 108 (205)
T pfam02562 84 YDALYDMLGA-EKVEKLIERGVIEIA 108 (205)
T ss_pred HHHHHHHHCH-HHHHHHHHCCCEEEC
T ss_conf 9999987289-999999975975661
No 204
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=94.79 E-value=0.039 Score=34.08 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHH---HHC-CCEEEECCHH
Q ss_conf 99998798733449999999---881-9879750044
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLA---HKF-NGAIINADSM 44 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA---~~~-~~~IIs~DS~ 44 (133)
=-+|+||||+|||-|-.-|+ +++ +..|+..|.-
T Consensus 458 HtlIiGpTGsGKTvll~fl~aq~~ky~~~~vf~FDKd 494 (818)
T PRK13830 458 HTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAFDKG 494 (818)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 0589899999889999999999864279838997488
No 205
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=94.76 E-value=0.043 Score=33.82 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE--EEECCHH
Q ss_conf 8499998798733449999999881987--9750044
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA--IINADSM 44 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~--IIs~DS~ 44 (133)
.+||++-|++-||||.+|-+|-..++.+ -++.|+.
T Consensus 1 G~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f 37 (174)
T pfam07931 1 GRIILLNGGSSSGKSSIARALQDILDGPWLHFGVDAF 37 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 9199974899888799999999847474676428588
No 206
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.75 E-value=0.028 Score=34.92 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+.+.+.|+||||||||.|+--|++-++
T Consensus 366 ~~G~~vaiVG~SGsGKSTL~~LL~gly~ 393 (581)
T PRK11176 366 PAGKTVALVGRSGSGKSTIANLLTRFYD 393 (581)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 9994431228999867899999985366
No 207
>KOG3354 consensus
Probab=94.74 E-value=0.035 Score=34.36 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 8984999987987334499999998819879750044
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSM 44 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~ 44 (133)
.-+-+|+++|+.|||||..+-.|+++++.+-+-+|-.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~ 46 (191)
T KOG3354 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL 46 (191)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7760599983588774459999999858862455557
No 208
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.73 E-value=0.028 Score=34.95 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||||||||.|.--|+..+
T Consensus 61 ~~Ge~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 499999999999981999999995787
No 209
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.71 E-value=0.043 Score=33.83 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+.+.+.|+||+|||||.|.--|+.-+.
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 2999999999999849999999964546
No 210
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.71 E-value=0.15 Score=30.47 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=42.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCC-CCCCCCCCCHH---HHCCCEEEECCEECCCCCCCH
Q ss_conf 499998798733449999999881-----987975004421168-22242346768---742340433144513765589
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDT-LRILTSRPSDQ---DMQSIPHYLYGYVPAQKSYST 81 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~-l~IgTaKps~~---e~~~v~H~lid~~~~~e~~sv 81 (133)
..++|.||+|+|||.|.-.++... +..++-.++-+.-.. ++........+ ....+.--.+|-++.- -.-
T Consensus 35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l--~~~ 112 (219)
T pfam00308 35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDALRDNKIEAFKKSYRNVDLLLIDDIQFL--AGK 112 (219)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCHHHH--CCC
T ss_conf 826998899998889999999999984999828884399999988999981888899999763233652236765--686
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999984
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQK 97 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~ 97 (133)
..|++..-..+.....
T Consensus 113 ~~~ee~lf~l~N~~~~ 128 (219)
T pfam00308 113 EKTQEEFFHTFNALHE 128 (219)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 4789999999999997
No 211
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.70 E-value=0.037 Score=34.19 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999879873344999999988198797
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAII 39 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~II 39 (133)
+|+|-|+-|||||.++-.|++.++..++
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 9899888888899999999996699489
No 212
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.68 E-value=0.031 Score=34.69 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=25.5
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 05898499998798733449999999881987
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
++...=++++.||||||||..-...-.+++.+
T Consensus 254 ~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 254 LNRPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 72897089996899998899999999986278
No 213
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.66 E-value=0.049 Score=33.49 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHH
Q ss_conf 8984999987987334499999998819-----8797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~Q 45 (133)
.++-+|+++|..|||||.+|-.|.+++. ..++..|-+.
T Consensus 2 ~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVR 44 (175)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 9888999889899999999999999999869967997768888
No 214
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.064 Score=32.76 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 898499998798733449999999881---98797500442116822242346768742
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPSDQDMQ 63 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps~~e~~ 63 (133)
....+++|+||.|||||.|.-.++.-. .|+|. +.|-||.. .++.++.
T Consensus 52 ~~GEi~~ivG~SGsGKSTLlr~i~gL~~Pt~G~I~-------i~G~di~~--~~~~~l~ 101 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL-------IDGVDIAK--ISDAELR 101 (400)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-------ECCEECCC--CCHHHHH
T ss_conf 79999999999984699999999759998981899-------99999998--9978987
No 215
>PRK01184 hypothetical protein; Provisional
Probab=94.60 E-value=0.055 Score=33.18 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 49999879873344999999988198797500
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
++|.|+|+-|||||.+|- +.+++|..+|+++
T Consensus 2 ~iIGlTG~iGSGKstva~-i~~e~G~~vi~~~ 32 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSK-IARELGIPVVVMG 32 (183)
T ss_pred EEEEEECCCCCCHHHHHH-HHHHCCCEEEECC
T ss_conf 399996899887899999-9997799399860
No 216
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.038 Score=34.11 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=32.1
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCCC
Q ss_conf 05898499998798733449999999881-----98797500442116822
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTLR 51 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l~ 51 (133)
+..++.++++.|..|||||.+|.+|++++ ...++-.|- +=.+|+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn--vR~gL~ 67 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN--VRHGLN 67 (197)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHH--HHHCCC
T ss_conf 2799859996468888787999999999997597589855746--765005
No 217
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.52 E-value=0.13 Score=30.99 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=49.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE---EEECCHHHHHCCC-CCCCCCCCHHHHCCCEEEECCEECCCCCCCHHH
Q ss_conf 898499998798733449999999881987---9750044211682-224234676874234043314451376558999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA---IINADSMQVYDTL-RILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGK 83 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~---IIs~DS~QvYk~l-~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~ 83 (133)
..+++++|.||-.+|||.+.-.|.+.+..+ +-++|..--+.++ |..-+--...+. ...+-++|.+. ++-.
T Consensus 35 ~~~~i~~i~GpR~~GKTtllk~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~-~~~yifLDEIq-----~v~~ 108 (398)
T COG1373 35 LRPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKER-EKSYIFLDEIQ-----NVPD 108 (398)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEEC-----CCHH
T ss_conf 57854999888647789999999974777359997362000135677899999985222-57459998333-----7610
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 537021.9.peg.8 84 WLRYAIKKIA 93 (133)
Q Consensus 84 f~~~a~~~i~ 93 (133)
|.+.....++
T Consensus 109 W~~~lk~l~d 118 (398)
T COG1373 109 WERALKYLYD 118 (398)
T ss_pred HHHHHHHHHC
T ss_conf 8999999975
No 218
>pfam00406 ADK Adenylate kinase.
Probab=94.51 E-value=0.027 Score=35.02 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=26.0
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9879873344999999988198797500
Q 537021.9.peg.8 15 ISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 15 I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
|+||.||||+..|-.||++++...||.-
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~G 28 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLSTG 28 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 9188989859999999998599067699
No 219
>KOG3877 consensus
Probab=94.50 E-value=0.038 Score=34.17 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC--------EEEECCH
Q ss_conf 89849999879873344999999988198--------7975004
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG--------AIINADS 43 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~--------~IIs~DS 43 (133)
...|+|++-||-|||||.||-+||++++. .+|-.||
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvds 112 (393)
T KOG3877 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDS 112 (393)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECC
T ss_conf 36507998577546701699999997197215643455143035
No 220
>PRK10744 phosphate transporter subunit; Provisional
Probab=94.50 E-value=0.082 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.|+.-+
T Consensus 34 ~~Ge~~~liG~nGaGKSTLlk~i~gl~ 60 (257)
T PRK10744 34 AKNQVTAFIGPSGCGKSTLLRTFNKMY 60 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899899999999981999999998765
No 221
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.47 E-value=0.13 Score=30.94 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
.+..++.|+||.|||||.|...+-..
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~~~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89989999999999899999988876
No 222
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.45 E-value=0.039 Score=34.09 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
.+.+.+.|+||+|||||.|...|+..+ .|+|
T Consensus 25 ~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I 58 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58 (218)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 6999999999999809999999855565677649
No 223
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.44 E-value=0.038 Score=34.11 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE--EEECC
Q ss_conf 98499998798733449999999881987--97500
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA--IINAD 42 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~--IIs~D 42 (133)
.+|=|+|.|-|+||||.+.-.|-+.+|.+ ||+.-
T Consensus 157 ~~knIii~GGTgSGKTTf~kal~~~IP~~ER~iTIE 192 (328)
T TIGR02788 157 SRKNIIISGGTGSGKTTFLKALVKEIPKDERLITIE 192 (328)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 389199990689718999999973276225278885
No 224
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.42 E-value=0.077 Score=32.29 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHHH
Q ss_conf 898499998798733449999999---881987975004421
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQV 46 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~Qv 46 (133)
...|++.|.||.+||||.||+.+. ++.++-.+=.|+=.-
T Consensus 53 P~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a 94 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA 94 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHC
T ss_conf 688089998898777999999999998735983999962542
No 225
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.39 E-value=0.036 Score=34.27 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 984999987987334499999998819
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
..+=|+|.|+|+||||.|...|...++
T Consensus 143 ~r~nilVsGgTGSGKTTllnaL~~~i~ 169 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 189689991777756899999998640
No 226
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.35 E-value=0.032 Score=34.59 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99998798733449999999881
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~ 34 (133)
+|+|.||.|||||.+|-.|++.+
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 227
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.34 E-value=0.046 Score=33.62 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||+|||||.|.-.|+--+
T Consensus 50 ~~Ge~vaIIG~nGsGKSTL~~~l~Gll 76 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 599899999499984999999997588
No 228
>KOG0741 consensus
Probab=94.33 E-value=0.046 Score=33.66 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC---EEEECCHHHHHCC
Q ss_conf 49999879873344999999988198---7975004421168
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNG---AIINADSMQVYDT 49 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~---~IIs~DS~QvYk~ 49 (133)
.-+++.||-+||||+||..+|+.-+. -|||.+.|-=|-+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sE 580 (744)
T KOG0741 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSE 580 (744)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCH
T ss_conf 589986699887688999997527998479737787037466
No 229
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.045 Score=33.72 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 898499998798733449999999881987
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.-+..++..||.|+|||.+|..+|+.+++.
T Consensus 36 RiaHAYLFsGPrGvGKTTlArifAkaLnC~ 65 (613)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (613)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 976227755899848899999999996699
No 230
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.32 E-value=0.047 Score=33.57 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=25.9
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0589849999879873344999999988198
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
....++++++.||.|+|||.|+-.|-+.+..
T Consensus 81 ~e~~kqIllL~GPVGsGKSsl~e~LK~glE~ 111 (358)
T pfam08298 81 LEERKQILYLLGPVGGGKSSLAERLKKLLEL 111 (358)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6721058999778987758999999987205
No 231
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.053 Score=33.24 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...++.+|+||||||||.+--++.-.+
T Consensus 23 f~~gi~lI~G~nGsGKSSIldAI~~AL 49 (908)
T COG0419 23 FDSGIFLIVGPNGAGKSSILDAITFAL 49 (908)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 788837998999997889999999998
No 232
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.28 E-value=0.027 Score=35.00 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 4999987987334499999998819879
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAI 38 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~I 38 (133)
++|++.|+-+||||.+|-+||+.+.-+|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5699826999880178999999999720
No 233
>KOG1969 consensus
Probab=94.27 E-value=0.066 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 898499998798733449999999881987975
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIIN 40 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs 40 (133)
..+||..++||-|-|||.||+-+|++-|..++-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 840068753688787247999999862854887
No 234
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.27 E-value=0.043 Score=33.83 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=22.9
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 0058984999987987334499999998819
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
+...+.-+|++.||||||||.---.+-..+|
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9828796699867999967879999999984
No 235
>KOG0734 consensus
Probab=94.26 E-value=0.23 Score=29.45 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCC-----HHHHCCCEE-EECCEECCC---CC
Q ss_conf 898499998798733449999999881987975004421168222423467-----687423404-331445137---65
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPS-----DQDMQSIPH-YLYGYVPAQ---KS 78 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps-----~~e~~~v~H-~lid~~~~~---e~ 78 (133)
.-||=++++||-|+|||-||-++|-+-+.+-..+-- .=|.++=+|-+.-- .+-+++.|+ -+||.+|.- .+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG-SEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG-SEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRN 413 (752)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCC-CCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
T ss_conf 588853876899975569999860556897474166-2044542201489999999998734985999720022056678
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHH---HHHHHCCCCCC
Q ss_conf 5899999999999999984100000133259855998893089---99984184357
Q 537021.9.peg.8 79 YSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYY---ARNTYCNKRKD 132 (133)
Q Consensus 79 ~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY---~~al~~~~~~d 132 (133)
-+... ++.+.|.+......+ +.++-..|++|-|++- -+||+.-.|.|
T Consensus 414 ~~~~~---y~kqTlNQLLvEmDG----F~qNeGiIvigATNfpe~LD~AL~RPGRFD 463 (752)
T KOG0734 414 PSDQH---YAKQTLNQLLVEMDG----FKQNEGIIVIGATNFPEALDKALTRPGRFD 463 (752)
T ss_pred CCHHH---HHHHHHHHHHHHHCC----CCCCCCEEEEECCCCHHHHHHHHCCCCCCC
T ss_conf 62778---999899999998428----676886699951687455568734887553
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.042 Score=33.89 Aligned_cols=80 Identities=8% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCC----CCHH-HHCCCEEEECCEEC--CCCC
Q ss_conf 98499998798733449999999881---9879750044211682224234----6768-74234043314451--3765
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSR----PSDQ-DMQSIPHYLYGYVP--AQKS 78 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaK----ps~~-e~~~v~H~lid~~~--~~e~ 78 (133)
..+=+++.||.|+|||.||.++|.++ +-.++=...-...+.+.-.-+. ..-. ++..++--.+|-+- +...
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 58828998999987999999999999983984999885999999999874552689999887528989982367766881
Q ss_pred CCHHHHHHHH
Q ss_conf 5899999999
Q 537021.9.peg.8 79 YSTGKWLRYA 88 (133)
Q Consensus 79 ~sv~~f~~~a 88 (133)
|....|.+..
T Consensus 184 ~~~~~~~q~I 193 (254)
T COG1484 184 EEADLLFQLI 193 (254)
T ss_pred HHHHHHHHHH
T ss_conf 5587999999
No 237
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=94.25 E-value=0.047 Score=33.59 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=22.9
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 1005898499998798733449999999
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLA 31 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA 31 (133)
..+...|-|-+|-||||||||+|--+|-
T Consensus 81 LNy~~qP~I~vVYGPTG~GKSQLlRNli 108 (370)
T pfam02456 81 LNYGLQPVIGVVYGPTGCGKSQLLRNLL 108 (370)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 5467874499998899877899999987
No 238
>KOG0744 consensus
Probab=94.24 E-value=0.04 Score=33.98 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=51.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC---------CEEEECCHHHHHCCCCCCCCCCC------HHHHCCCE----E
Q ss_conf 58984999987987334499999998819---------87975004421168222423467------68742340----4
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN---------GAIINADSMQVYDTLRILTSRPS------DQDMQSIP----H 67 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~---------~~IIs~DS~QvYk~l~IgTaKps------~~e~~~v~----H 67 (133)
=+-+|+|++-||-|+|||.|.-+||+++. +.+|-..|-.+|-.+=--|+|-- .+|+...+ .
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66414899857999882279999987514652376444069997046788988712113899999999999717896899
Q ss_pred EECCEEC-----------CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3314451-----------376558999999999999999
Q 537021.9.peg.8 68 YLYGYVP-----------AQKSYSTGKWLRYAIKKIAEV 95 (133)
Q Consensus 68 ~lid~~~-----------~~e~~sv~~f~~~a~~~i~~i 95 (133)
-|||.++ -+|+-.+-+-.+.....++.+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl 292 (423)
T KOG0744 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL 292 (423)
T ss_pred EEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 980787888999875413799821899999999989986
No 239
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=94.17 E-value=0.063 Score=32.81 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=23.4
Q ss_pred EEEECCCCCCHHHHHHHHH---HHC----CCEEEECCHHH
Q ss_conf 9998798733449999999---881----98797500442
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLA---HKF----NGAIINADSMQ 45 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA---~~~----~~~IIs~DS~Q 45 (133)
-+|+||||+|||.|..-|+ +++ ++.++-.|.-+
T Consensus 429 t~I~G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~fDkd~ 468 (789)
T PRK13853 429 TAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVFFDKDR 468 (789)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 4887899998899999999999974223577089995886
No 240
>PRK03918 chromosome segregation protein; Provisional
Probab=94.14 E-value=0.053 Score=33.28 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+.+.+|+||||||||.+--++.-.+
T Consensus 22 ~~Gi~~I~G~nGsGKStIlDAI~~aL 47 (882)
T PRK03918 22 KSGINLIIGQNGSGKSSLLDAILVGL 47 (882)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99927988999998899999999998
No 241
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=94.14 E-value=0.038 Score=34.13 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879873344999999988
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~ 33 (133)
+++|.-|||.|||+.|+-+|.+
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~ 22 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALK 22 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 9688617899878999999986
No 242
>COG4639 Predicted kinase [General function prediction only]
Probab=94.13 E-value=0.12 Score=31.21 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCC
Q ss_conf 8499998798733449999999881987975004421168
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDT 49 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~ 49 (133)
+.+++++|+-|||||.+|-+. ..+.+++|+|+.+--.|
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg 39 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLG 39 (168)
T ss_pred CEEEEEECCCCCCHHHHHHHH--CCCCCEECHHHHHHHHH
T ss_conf 448998668877642899971--79953414999998862
No 243
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=94.13 E-value=0.037 Score=34.23 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH--H--HHCCCEEEECCHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 89849999879873344999999--9--88198797500442116822242346768742
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNL--A--HKFNGAIINADSMQVYDTLRILTSRPSDQDMQ 63 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~L--A--~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~ 63 (133)
.+.++|+|.|.-|||||.||.+= | +|--.|=+|+=++|.---|+ ||+.+--.
T Consensus 20 Pr~~lVViTG~SGSGKSSLAFDTiYAEGQRRYvESLSaYARQFLg~~~----KPdVD~IE 75 (956)
T TIGR00630 20 PRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGVMD----KPDVDSIE 75 (956)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----CCCCCCCC
T ss_conf 898669997456886154565467661450021001589998647874----77835014
No 244
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.12 E-value=0.046 Score=33.64 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
..+-++|+|+|+||||.|...|...+
T Consensus 148 ~r~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 148 AHRNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 28758998588865689999998632
No 245
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.11 E-value=0.062 Score=32.86 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+...+.|+||+|||||.|.-.|..-++
T Consensus 28 ~~Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7999999999999979999999960357
No 246
>PRK10536 hypothetical protein; Provisional
Probab=94.09 E-value=0.055 Score=33.17 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=45.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHH
Q ss_conf 98499998798733449999999881987975004421168222423467687423404331445137655899999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYA 88 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a 88 (133)
.+.+++..||.|||||-||+..|-+.=- ..+ |+ .|.-.||..+- + .-+++++.+.+--..-|.+-.
T Consensus 73 ~~~ivf~~GpAGTGKT~lA~a~Al~~l~------~~~-~~--kIIltRP~V~~--g---e~lGfLPGdl~EK~~Pyl~Pi 138 (262)
T PRK10536 73 SKQLIFATGEAGCGKTWISAAKAAEALI------HKD-VD--RIIVTRPVLQA--D---EDLGFLPGDIAEKFAPYFRPV 138 (262)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHH------HCC-CC--EEEEECCCCCC--C---CCCCCCCCCHHHHHHHHHHHH
T ss_conf 1983999899987589999999999998------588-86--89996678756--7---666769898799887888789
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 537021.9.peg.8 89 IKKIAEVQ 96 (133)
Q Consensus 89 ~~~i~~i~ 96 (133)
...+++..
T Consensus 139 ~D~L~~~l 146 (262)
T PRK10536 139 YDVLVRRL 146 (262)
T ss_pred HHHHHHHH
T ss_conf 99999996
No 247
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.07 E-value=0.26 Score=29.05 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=26.4
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0589849999879873344999999988198
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
......+.+|.|+-|+|||.+.-.+.+.++.
T Consensus 39 l~~~~g~~lltGe~GtGKTtllr~l~~~l~~ 69 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9648965999729989889999999984593
No 248
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.06 E-value=0.037 Score=34.18 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=42.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC--CCEEEECCHHHHHCCCCCCCCCCCHHHHCCC---EEEECCEECCCCCCCHH
Q ss_conf 898499998798733449999999881--9879750044211682224234676874234---04331445137655899
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF--NGAIINADSMQVYDTLRILTSRPSDQDMQSI---PHYLYGYVPAQKSYSTG 82 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~--~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v---~H~lid~~~~~e~~sv~ 82 (133)
.....+.|+||-|||||.||=-+-=-. -.--|=.|..-+++ =..|..-+. ==--|...+.+-.-|.+
T Consensus 354 ~aGe~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~q--------WD~e~lG~~iGYLPQdvELF~GTva~NIA 425 (556)
T TIGR01842 354 QAGEALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLKQ--------WDRETLGKHIGYLPQDVELFSGTVAENIA 425 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHC--------CCHHHCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 3774588874786525889878872101356533640334402--------37536588015479850507676764024
Q ss_pred HHHH--HHHHHHHH
Q ss_conf 9999--99999999
Q 537021.9.peg.8 83 KWLR--YAIKKIAE 94 (133)
Q Consensus 83 ~f~~--~a~~~i~~ 94 (133)
+|-+ +..++||.
T Consensus 426 RF~en~d~~~iieA 439 (556)
T TIGR01842 426 RFGENADPEKIIEA 439 (556)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 46887887899999
No 249
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.05 E-value=0.052 Score=33.31 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.....++|+||+|||||.|.--|+.-+.
T Consensus 26 ~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5999999999999809999999966666
No 250
>KOG0737 consensus
Probab=94.04 E-value=0.052 Score=33.32 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=40.1
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCE
Q ss_conf 0589849999879873344999999988198797500442116822242346768742340
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIP 66 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~ 66 (133)
+...++-|++.||-++|||-||-++|++-++.-||++ +...|.|---|-++.++
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~-------~s~lt~KWfgE~eKlv~ 176 (386)
T KOG0737 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS-------VSNLTSKWFGEAQKLVK 176 (386)
T ss_pred CCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEE-------CCCCCHHHHHHHHHHHH
T ss_conf 1468643051189982188999999987279710001-------36553266777888999
No 251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.063 Score=32.79 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...++|+||+|||||.|.--|..-+
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999899982999999996676
No 252
>KOG1970 consensus
Probab=94.03 E-value=0.073 Score=32.44 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 89849999879873344999999988198797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~II 39 (133)
-..++++|.||+|+|||..--.|++.++-+++
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 67607998579888713199999986480212
No 253
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=94.02 E-value=0.066 Score=32.68 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHH---HHC-CCEEEECCHH
Q ss_conf 99998798733449999999---881-9879750044
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLA---HKF-NGAIINADSM 44 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA---~~~-~~~IIs~DS~ 44 (133)
=-+|+||||+|||-|-.-|+ +++ +..|+-.|.-
T Consensus 443 HtlI~GpTGsGKTvll~~l~~q~~ry~~~~vf~FDkd 479 (815)
T PRK13873 443 HTLVVGPTGAGKSVLLALMALQFRRYPGSQVFAFDFG 479 (815)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 4389788999899999999999864489848999789
No 254
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=94.01 E-value=0.071 Score=32.49 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC---C---CEEEECCHHH
Q ss_conf 499998798733449999999881---9---8797500442
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF---N---GAIINADSMQ 45 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~---~---~~IIs~DS~Q 45 (133)
+++.|+||..||||.|+-.|+..+ + +.+++.|--|
T Consensus 1 p~v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~~~~~d~gq 41 (122)
T pfam03205 1 PIVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHGQ 41 (122)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 97999948999899999999999998799448999899998
No 255
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.088 Score=31.92 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=39.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC--CEEEECCHHHHHCC-CCC-CCCCCCHHHHCCCEEEECCEE
Q ss_conf 8984999987987334499999998819--87975004421168-222-423467687423404331445
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN--GAIINADSMQVYDT-LRI-LTSRPSDQDMQSIPHYLYGYV 73 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~--~~IIs~DS~QvYk~-l~I-gTaKps~~e~~~v~H~lid~~ 73 (133)
....++.|+|+.|||||.++..|..-++ +..+..|.+-+... -++ .-...+..++..+.-.-++.+
T Consensus 40 ~~GE~vaLvGeSGSGKSTl~~~l~gll~~~~g~i~~g~~~~~~~~~~~~~l~~~~~~~~r~~rg~~I~~V 109 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 8998999998999789999999977987888579879889614776510154348899987415777999
No 256
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.00 E-value=0.06 Score=32.94 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=23.8
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 0058984999987987334499999998819
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
+++...=++++.|||+||||..-..+-+.++
T Consensus 75 ~~~~~~GlilitGptGSGKtTtl~a~l~~~~ 105 (264)
T cd01129 75 LLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9708998899978999977999999998643
No 257
>KOG1051 consensus
Probab=93.97 E-value=0.048 Score=33.53 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=27.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-CC--EEEECCHHH
Q ss_conf 499998798733449999999881-98--797500442
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF-NG--AIINADSMQ 45 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~-~~--~IIs~DS~Q 45 (133)
--+++.|||++|||.||.+||..+ +. ..|..|.-.
T Consensus 592 awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051 592 AWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHH
T ss_conf 58999788841389999999999728864268961455
No 258
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.93 E-value=0.06 Score=32.94 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.+|-+++.||-|+|||.+|-.||..+.++
T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~ 221 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 58827965899988789999999997078
No 259
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.068 Score=32.60 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.....+.|+||+|||||.|.--|..-+
T Consensus 25 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 699999999999998999999974385
No 260
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.073 Score=32.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.....++|+||+|||||.|.--|+.-+
T Consensus 27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999980999999996686
No 261
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=93.85 E-value=0.12 Score=31.16 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHHHH
Q ss_conf 898499998798733449999999---8819879750044211
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQVY 47 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~QvY 47 (133)
...|++.|.||.+||||.||+.+. ++.++..+=.|+=.-+
T Consensus 50 P~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~ 92 (322)
T pfam00154 50 PKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 92 (322)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHC
T ss_conf 7870899988987778999999999997349938998536605
No 262
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.83 E-value=0.068 Score=32.59 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.....+.|+||+|||||.|.--|..-+.
T Consensus 45 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 72 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 7999999999999819999999960566
No 263
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.80 E-value=0.067 Score=32.65 Aligned_cols=28 Identities=29% Similarity=0.164 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
....++.|+||+|||||.|+-.|+.-+.
T Consensus 31 ~~GE~vaivG~nGsGKSTL~k~l~Gl~~ 58 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999659999999972888
No 264
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.79 E-value=0.27 Score=28.95 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-----CEEEECC
Q ss_conf 999987987334499999998819-----8797500
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN-----GAIINAD 42 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~D 42 (133)
+++|+|--|||||.+|-.|++.+. ..+++.|
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d 36 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTD 36 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 978967899989999999999999829965996552
No 265
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.79 E-value=0.07 Score=32.54 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHH-HHCCCCCCCCCCCHHHHCCCEEEECCEE----CCCCCCCHH
Q ss_conf 89849999879873344999999988198797500442-1168222423467687423404331445----137655899
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQ-VYDTLRILTSRPSDQDMQSIPHYLYGYV----PAQKSYSTG 82 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Q-vYk~l~IgTaKps~~e~~~v~H~lid~~----~~~e~~sv~ 82 (133)
.....++|+||+|||||.|=.-++--. +.||=+ .+.|-|+ .+.+.+++...+..-++++ +.-..+||.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld-----~pt~G~v~i~g~~~--~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ 101 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD-----KPTSGEVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVL 101 (226)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC-----CCCCCEEEECCEEC--CCCCHHHHHHHHHHHEEEECCCCCCCCCCCHH
T ss_conf 499899998999998999999996466-----78884699998886--75898899999777489987567778988899
Q ss_pred HHHH
Q ss_conf 9999
Q 537021.9.peg.8 83 KWLR 86 (133)
Q Consensus 83 ~f~~ 86 (133)
+...
T Consensus 102 ENv~ 105 (226)
T COG1136 102 ENVE 105 (226)
T ss_pred HHHH
T ss_conf 9998
No 266
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.79 E-value=0.054 Score=33.19 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 89849999879873344999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNL 30 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~L 30 (133)
.+..+++|+||.|||||.|++.+
T Consensus 19 ~~Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH
T ss_conf 59989999878996098983616
No 267
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.74 E-value=0.071 Score=32.48 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|.-.++--+
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~GLl 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999981999999997078
No 268
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.73 E-value=0.06 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 99987987334499999998819879
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAI 38 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~I 38 (133)
+++.||=|-|||.||.-+|.+++..|
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Emg~~l 58 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 66317568746789999999838932
No 269
>PRK10867 signal recognition particle protein; Provisional
Probab=93.72 E-value=0.28 Score=28.87 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=46.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC------CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEE--EECCEECCCCC
Q ss_conf 58984999987987334499999998819------87975004421168222423467687423404--33144513765
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN------GAIINADSMQVYDTLRILTSRPSDQDMQSIPH--YLYGYVPAQKS 78 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~------~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H--~lid~~~~~e~ 78 (133)
+..|.+|.++|.-|||||.-+-.||..+. .-+++|| |-||-.-||-.+-- -.+.++.....
T Consensus 97 ~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaD-----------t~RpaA~eQL~~la~~~~v~~~~~~~~ 165 (453)
T PRK10867 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD-----------VYRPAAIKQLETLAEQVGVDFFPSDVG 165 (453)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-----------CCHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 899969999746888518589999999997389837985588-----------770589999999998519804367889
Q ss_pred CCHHHHHHHHHH
Q ss_conf 589999999999
Q 537021.9.peg.8 79 YSTGKWLRYAIK 90 (133)
Q Consensus 79 ~sv~~f~~~a~~ 90 (133)
-+...-..++.+
T Consensus 166 ~dp~~ia~~a~~ 177 (453)
T PRK10867 166 QKPVDIVNAALK 177 (453)
T ss_pred CCHHHHHHHHHH
T ss_conf 988999999999
No 270
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.72 E-value=0.12 Score=31.10 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH---HCCCEEEECCH
Q ss_conf 984999987987334499999998---81987975004
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAH---KFNGAIINADS 43 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~---~~~~~IIs~DS 43 (133)
...++.|.||.++|||.|++.+|. +.+..++=.|.
T Consensus 22 ~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidt 59 (224)
T PRK09361 22 RGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDT 59 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 88799998999985999999999999974990999678
No 271
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.68 E-value=0.088 Score=31.92 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=27.6
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 05898499998798733449999999881987975
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIIN 40 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs 40 (133)
-+.+.+=+++.||-|+|||.||.-+|+..+.+-+.
T Consensus 48 ~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~ 82 (726)
T PRK13341 48 KADRVGSLILYGPPGVGKTTLARIIANHTRAHFSS 82 (726)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 76999827888979999999999998874886799
No 272
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.66 E-value=0.074 Score=32.40 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
-+..++..||-|+|||.+|..+|+.++++
T Consensus 35 l~HAYLFsGPrGvGKTt~ArifAkaLnC~ 63 (523)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFSRALVCE 63 (523)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 67158757899868899999999997599
No 273
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.075 Score=32.36 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
.+..++.|+||+|||||.|+--|+--+ .|.|
T Consensus 26 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I 59 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59 (274)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 4899999999999809999999970685888729
No 274
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.64 E-value=0.24 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 5898499998798733449999999881987
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
+-...+.+|+||.|||||.|.-.+...+.++
T Consensus 19 ~f~~~itaivG~NGaGKSTLl~~i~~~l~g~ 49 (204)
T cd03240 19 EFFSPLTLIVGQNGAGKTTIIEALKYALTGE 49 (204)
T ss_pred EEECCEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8508889999899999999999986304772
No 275
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.077 Score=32.29 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
.+..++.|+||+|||||.|.-.|+--+ .|.|
T Consensus 31 ~~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G~V 64 (304)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 5998999987999859999999966999887169
No 276
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.62 E-value=0.07 Score=32.55 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|.--++..+
T Consensus 29 ~~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 699899999999985899999981895
No 277
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.62 E-value=0.069 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|.--+..-+
T Consensus 28 ~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999985999999996725
No 278
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.073 Score=32.43 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
-+..++..||-|+|||.+|..+|+.++++
T Consensus 37 l~HAyLFsGprG~GKTt~ArilAk~LnC~ 65 (560)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 77436632899878999999999996599
No 279
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.61 E-value=0.081 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.....+.|+||+|||||.|.--|..-+
T Consensus 26 ~~G~~vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999985999999996776
No 280
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.042 Score=33.90 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 89849999879873344999999988198
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
.+..++.|+||.|||||.++..+...++.
T Consensus 27 ~~Ge~~aiiG~SGsGKStl~k~llgll~~ 55 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89999999999987899999999579988
No 281
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.077 Score=32.30 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||+|||||.|.--++--.
T Consensus 26 ~~Ge~~~iiGpSGsGKSTll~~i~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999977999999997699
No 282
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.12 Score=31.15 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8499998798733449999999881987
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
|.-++|.||||+|||..+-.+++++..+
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8607998899987328999999999733
No 283
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.077 Score=32.28 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|+-.|+.-+
T Consensus 32 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll 58 (283)
T PRK13640 32 PRGSWTALIGHNGSGKSTISKLINGLL 58 (283)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999999987999999996403
No 284
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.57 E-value=0.25 Score=29.19 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
....++.|+||.|||||.|.-.++-.++
T Consensus 25 ~~Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998999999999769999999956788
No 285
>PRK10436 hypothetical protein; Provisional
Probab=93.56 E-value=0.077 Score=32.28 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=23.7
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 00589849999879873344999999988198
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
+++...=++++.||||||||.--..+-+.++.
T Consensus 210 ~~~~p~GliLvtGPTGSGKTTTLya~L~~l~~ 241 (461)
T PRK10436 210 ALQQPQGLVLVTGPTGSGKTVTLYSALQTLNT 241 (461)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 98389977999789999569999999974346
No 286
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.52 E-value=0.1 Score=31.53 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.....+.|+||+|||||.|.--|+..+.
T Consensus 32 ~~Ge~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6999999999999879999999998728
No 287
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.39 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|+|||.|.-.++.-+
T Consensus 26 ~~Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899799999999981999999997598
No 288
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.28 Score=28.88 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 89849999879873344999999988198
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
.-+..+++.||.|+||+.+|..+|+.+-+
T Consensus 37 rl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~ 65 (363)
T PRK07471 37 RLHHAWLIGGPQGIGKATLAYRMARFLLA 65 (363)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 97645876799981889999999999857
No 289
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.51 E-value=0.091 Score=31.84 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=15.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 984999987987334499999998
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
+....+|.||+|+|||.+|+..+.
T Consensus 265 ~GsstLi~Gp~GtGKTtla~qFl~ 288 (501)
T PRK09302 265 RGSIILVSGATGTGKTLLVSKFAE 288 (501)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 894699988999888999999999
No 290
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.50 E-value=0.08 Score=32.17 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.+..+++.||.|+|||.+|..||+.+.++
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 87610037999997899999999996586
No 291
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.082 Score=32.11 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+...+.|+||+|||||.|.--|+.-+.
T Consensus 26 ~~Ge~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5998999999999839999999976775
No 292
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.49 E-value=0.078 Score=32.23 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 89849999879873344999999988198
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
.+++-|+|+||||||||.+-..+..-.+-
T Consensus 141 e~~~siii~G~t~sGKTt~lnall~~Ip~ 169 (312)
T COG0630 141 EARKSIIICGGTASGKTTLLNALLDFIPP 169 (312)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 76994999888888649599999863785
No 293
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.47 E-value=0.13 Score=30.92 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 898499998798733449999999881-----98797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
.++.++++.|..|||||.+|.+|.+++ ...++-.|-+.
T Consensus 441 ~~~~~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LDGd~lR 483 (613)
T PRK05506 441 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYVLDGDNVR 483 (613)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 9976999977898974799999999999779987998808987
No 294
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.47 E-value=0.086 Score=32.01 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.--++.-+
T Consensus 31 ~~Ge~~~i~G~sGsGKSTLlk~i~gl~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 599699999999999999999996466
No 295
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=93.42 E-value=0.071 Score=32.49 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHCC-------------------------CEEEECC----HHHHHCCCCCCCCC
Q ss_conf 984---999987987334499999998819-------------------------8797500----44211682224234
Q 537021.9.peg.8 9 HTK---AIFISGPTASGKSLCAVNLAHKFN-------------------------GAIINAD----SMQVYDTLRILTSR 56 (133)
Q Consensus 9 ~~~---ii~I~GpTasGKT~lai~LA~~~~-------------------------~~IIs~D----S~QvYk~l~IgTaK 56 (133)
+++ |++|.||.|||||..--.|+|.++ ++-++.+ -+.+|.+|-.+..|
T Consensus 114 ~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~k 193 (670)
T TIGR00602 114 KKRGGSILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKEQKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATK 193 (670)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 66775378841755884478999998886445655407878888851244442125402216763145546787642123
Q ss_pred CCHHHHC------CCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEE-EE
Q ss_conf 6768742------3404331445137655899999999999999984100000133259855-99
Q 537021.9.peg.8 57 PSDQDMQ------SIPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFS-CI 114 (133)
Q Consensus 57 ps~~e~~------~v~H~lid~~~~~e~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~p-ii 114 (133)
-..-+.. .-+-=|++-+|.-..|+.-.-++..+.+|...+ -.+|..| ||
T Consensus 194 Y~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~~~---------~~~g~~pPlv 249 (670)
T TIGR00602 194 YNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRTKY---------VSEGRLPPLV 249 (670)
T ss_pred HHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHH---------HCCCCCCCEE
T ss_conf 4666421411024754577213764022136612689999999986---------2378988358
No 296
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.40 E-value=0.095 Score=31.74 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCC
Q ss_conf 8499998798733449999999881-----9879750044211682
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTL 50 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l 50 (133)
-..++|.||+|+|||.|..+++... ++-++-+.|-+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~ 158 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF 158 (408)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 8957998799997899999999999862998648850489989999
No 297
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=93.39 E-value=0.13 Score=30.81 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 5898499998798733449999999
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLA 31 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA 31 (133)
+....+|+|.-|||||||..+.--+
T Consensus 11 ~~~~~~ivitAPTgsGKT~Aa~lp~ 35 (357)
T TIGR03158 11 SKDADIIFNTAPTGAGKTLAWLTPL 35 (357)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 6899869998999856999999999
No 298
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=93.39 E-value=0.065 Score=32.73 Aligned_cols=66 Identities=21% Similarity=0.442 Sum_probs=49.1
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCC------CEEEECCH--HHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 058984999987987334499999998819------87975004--4211682224234676874234043314451
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFN------GAIINADS--MQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~------~~IIs~DS--~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
+....-+++|.|.||||||.|--.+-+++- -.|+.-.| --||.++...||..+..| +|.||-++.+
T Consensus 130 iaPqeG~v~~tGatGsGkstlla~iirel~e~~ds~rk~ltye~Pie~vyd~~~t~~a~v~qse---iPrhl~~fa~ 203 (358)
T TIGR02524 130 IAPQEGVVYVTGATGSGKSTLLAAIIRELIEASDSNRKVLTYEAPIEYVYDELETISAVVSQSE---IPRHLNSFAD 203 (358)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCEEEEEHHH---CCHHHHHHHH
T ss_conf 1788866998626776368899999999860676564146422632332211010011222000---2122567888
No 299
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.39 E-value=0.083 Score=32.08 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||+|||||.|.-.|+--+
T Consensus 18 ~~Ge~vaiiG~sGsGKSTLl~~l~GLl 44 (276)
T PRK13634 18 PSGSYVAIIGHTGSGKSTLLQHLNGLL 44 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999969999999997499
No 300
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.39 E-value=0.067 Score=32.65 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCC
Q ss_conf 849999879873344999999988198797500442116822
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLR 51 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~ 51 (133)
.+-+++.||+|+|||.|+-.+|+.++.. .=.+|++.++.
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~---~~~i~~t~~l~ 81 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLP---FVRIQCTPDLL 81 (329)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC---CEEEECCCCCC
T ss_conf 9977877989877799999999983898---18995689988
No 301
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=93.37 E-value=0.1 Score=31.51 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHH---HH-CCCEEEECCH
Q ss_conf 9998798733449999999---88-1987975004
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLA---HK-FNGAIINADS 43 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA---~~-~~~~IIs~DS 43 (133)
-+|+||||+|||-|-.-|+ ++ -+..|+..|.
T Consensus 491 TlIiGpTGaGKTvll~fL~aQ~~rY~~~~vf~FDK 525 (852)
T PRK13891 491 TFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAFDK 525 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 07878999988999999999974418981898789
No 302
>PRK09354 recA recombinase A; Provisional
Probab=93.37 E-value=0.14 Score=30.63 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHH
Q ss_conf 898499998798733449999999---88198797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~Q 45 (133)
.+.|++-|.||.+||||.||+... ++.++..+=.|+=.
T Consensus 58 P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ 98 (350)
T PRK09354 58 PKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (350)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 78708999889877799999999999997599479996000
No 303
>PRK01156 chromosome segregation protein; Provisional
Probab=93.35 E-value=0.091 Score=31.83 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.+-+.+|+||||||||.+--++.=.+.++
T Consensus 22 ~~Gi~~I~G~NGaGKStIldAI~~aL~g~ 50 (895)
T PRK01156 22 DTGINIITGKNGAGKSSIVDAIRFALFTD 50 (895)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99927888999998789999999997789
No 304
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=93.35 E-value=0.16 Score=30.36 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHH---HHHHHCCCEEEECCHH
Q ss_conf 5898499998798733449999---9998819879750044
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAV---NLAHKFNGAIINADSM 44 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai---~LA~~~~~~IIs~DS~ 44 (133)
...++=++|+|||+||||..-. .-+...+..+|-.|--
T Consensus 12 ~~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~~s~iv~DpK 52 (386)
T pfam10412 12 RSETQHILIVGTTGTGKTQALRELLDQIRARGDRAIIYDPT 52 (386)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 87767589988999988879999999999779919999587
No 305
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.34 E-value=0.059 Score=32.98 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=27.6
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 879873344999999988198797500442
Q 537021.9.peg.8 16 SGPTASGKSLCAVNLAHKFNGAIINADSMQ 45 (133)
Q Consensus 16 ~GpTasGKT~lai~LA~~~~~~IIs~DS~Q 45 (133)
+|..|||||.++-.||++++++-|-.|...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlH 30 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLH 30 (161)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 987765777999999998098233356569
No 306
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.31 E-value=0.11 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=27.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 49999879873344999999988198797500
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
+.|+|.|+-|+|||.++-.|+ .++-..+++-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCEEEHH
T ss_conf 937993799986687999999-8298466199
No 307
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.28 E-value=0.14 Score=30.65 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=15.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...++.|+||.|||||.|+-.|+--+
T Consensus 30 ~Ge~~~lvG~nGsGKSTL~~~l~Gl~ 55 (513)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVY 55 (513)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99799998999972999999995678
No 308
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.23 E-value=0.095 Score=31.73 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEECC
Q ss_conf 98499998798733449999999881------98797500
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF------NGAIINAD 42 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~------~~~IIs~D 42 (133)
...+++|.|+|++|||.++.++|..+ +.-++|..
T Consensus 12 ~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9818999968999999999999999999779959999333
No 309
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.23 E-value=0.093 Score=31.78 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEE
Q ss_conf 898499998798733449999999881---987975
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIIN 40 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs 40 (133)
.+...+.|+||+|||||.|.-.++--+ .|+|+-
T Consensus 35 ~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~ 70 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 899899999999957999999996598899985999
No 310
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.22 E-value=0.1 Score=31.51 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
.+...+.|+||+|||||.|.--++..+ .|+|.
T Consensus 26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~ 60 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 69999999999987599999999861766788699
No 311
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=93.21 E-value=0.068 Score=32.62 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.4
Q ss_pred EECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 98798733449999999881-----98797500442
Q 537021.9.peg.8 15 ISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 15 I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
|+||-|||||.+.-.+.+.+ +..|||.|--.
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~ 36 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAA 36 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 989898988999999999999779975999789866
No 312
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.15 E-value=0.098 Score=31.64 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
....++.|+||.|||||.|.-.|+.-
T Consensus 25 ~~Ge~~aliG~sGsGKSTLl~~l~gl 50 (248)
T PRK11264 25 KPGEVVAIIGPSGSGKTTLLRCINLL 50 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79989999999998099999999758
No 313
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.13 E-value=0.11 Score=31.46 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 589849999879873344999999988198797500
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
+.+..=.++.||-|+|||.||--+|+.++.+..-..
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 499860577789998888999999876177669951
No 314
>COG0645 Predicted kinase [General function prediction only]
Probab=93.13 E-value=0.13 Score=30.81 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHH-HHHCCCCCCCCC----CCHHHHCCCEEEECCEE
Q ss_conf 84999987987334499999998819879750044-211682224234----67687423404331445
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSM-QVYDTLRILTSR----PSDQDMQSIPHYLYGYV 73 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~-QvYk~l~IgTaK----ps~~e~~~v~H~lid~~ 73 (133)
.+++++.|--|||||.+|-.|++.+++..|+.|-. |--.+.+.-+.. +|++....+.+++++..
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A 69 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRA 69 (170)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 947997258886586887898853486687417899872388610148878876788999999999889
No 315
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=93.12 E-value=0.12 Score=31.09 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=54.4
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCC-CCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHH
Q ss_conf 05898499998798733449999999881987975004421168-22242346768742340433144513765589999
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDT-LRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKW 84 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~-l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f 84 (133)
|.-...=++|.|..|.|||++|++|-++ |.-.|+=|..-++|- =+...++.++--+.-..-.++++++...-|-++..
T Consensus 142 vdV~G~GVLI~G~SGiGKSE~aLeLI~R-GHrLVADD~v~i~ri~~~~l~G~~p~~~~~~~EvRGlGIinI~~lfG~~av 220 (308)
T PRK05428 142 VDVYGIGVLITGESGIGKSETALELIKR-GHRLVADDAVDIKRIGEDTLIGRCPEILKHLLEIRGLGIIDVMTLFGAGAV 220 (308)
T ss_pred EEEEEEEEEEECCCCCCHHHHHHHHHHC-CCEEEECCEEEEEEECCCEEEEECCHHHHHHHHHCCCCEEEHHHHCCHHHE
T ss_conf 9994448999758888812899999984-993670670899992698689879157502455327758868775286662
Q ss_pred HH
Q ss_conf 99
Q 537021.9.peg.8 85 LR 86 (133)
Q Consensus 85 ~~ 86 (133)
++
T Consensus 221 r~ 222 (308)
T PRK05428 221 RD 222 (308)
T ss_pred EC
T ss_conf 15
No 316
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=93.07 E-value=0.097 Score=31.66 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 98499998798733449999999
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLA 31 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA 31 (133)
...+++|.||+|+|||-||...+
T Consensus 18 ~gs~~LI~G~pGsGKT~la~qfl 40 (231)
T pfam06745 18 EGRVVLITGGPGTGKTIFGLQFL 40 (231)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99699998589725999999999
No 317
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.05 E-value=0.066 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=32.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCC
Q ss_conf 499998798733449999999881987975004421168
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDT 49 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~ 49 (133)
.-++|.|+.++|||++|++|-++ +...|.-|..-+|+.
T Consensus 16 ~Gvli~G~SgiGKSE~AleLi~r-ghrLVaDD~Vei~~~ 53 (107)
T cd00820 16 VGVLITGDSGIGKTELALELIKR-KHRLVGDDNVEIRED 53 (107)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEC
T ss_conf 65899868878786999999984-883131653999981
No 318
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.02 E-value=0.1 Score=31.55 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCC
Q ss_conf 898499998798733449999999881---98797500442116822242346
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRP 57 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKp 57 (133)
.+..++.|+||.|||||.|.-.++.-+ .|+| .|.|-+|....+
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I-------~~~g~~i~~~~~ 74 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-------IFDGKDLLKLSR 74 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-------EECCEECCCCCH
T ss_conf 6998999999999869999999972898788669-------989964677999
No 319
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.99 E-value=0.097 Score=31.68 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 898499998798733449999999881---9879750044211682224234676874234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPSDQDMQSI 65 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v 65 (133)
.+...++|+||+|||||.|.-.|+--+ .|+| - ..|.++..++...+-+..+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~------~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-L------VDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE-E------ECCCCCCCHHHHHHHHCCE
T ss_conf 7898999988999889999999537676889848-8------7781331002188763121
No 320
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=92.98 E-value=0.096 Score=31.71 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHH
Q ss_conf 999987987334499999998819-----8797500442
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQ 45 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~Q 45 (133)
+|+|+|.-+||||..|-+|++.+. ..|||-|+..
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d~~~~ 39 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESLG 39 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 979857999968899999999999759938997800126
No 321
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=92.98 E-value=0.074 Score=32.38 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99987987334499999998819
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~ 35 (133)
|+|.||.|+|||.++..||+.+.
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~ 23 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALL 23 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98979998988999999999999
No 322
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.97 E-value=0.097 Score=31.67 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCCCEEEEECCCCCCHHHHHH
Q ss_conf 898499998798733449999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAV 28 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai 28 (133)
...+++.|+||.|||||.|..
T Consensus 19 ~~G~~~aIiG~sGsGKSTLl~ 39 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLIN 39 (261)
T ss_pred CCCCEEEEECCCCCCHHHHHH
T ss_conf 899999998799986999999
No 323
>PTZ00243 ABC transporter; Provisional
Probab=92.94 E-value=0.11 Score=31.39 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 499998798733449999999881
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.-+.|+|+||||||.|...|-+-+
T Consensus 1337 EKVGIVGRTGSGKSSLi~aLfRl~ 1360 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMV 1360 (1560)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999998798743999999997032
No 324
>pfam01202 SKI Shikimate kinase.
Probab=92.94 E-value=0.14 Score=30.64 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 73344999999988198797500442116822242346768742340433144513765589999999999999998410
Q 537021.9.peg.8 20 ASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTV 99 (133)
Q Consensus 20 asGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~i~~i~~~~ 99 (133)
|||||.++-.||++++.+-|..|..= ++..+ ..+-+.-+.+--..|++.-.+.+.++..
T Consensus 2 GsGKstigk~LA~~L~~~fiD~D~~i--------------e~~~g-----~si~eif~~~Ge~~FR~~E~~~l~~l~~-- 60 (158)
T pfam01202 2 GAGKTTIGRLLAKALGLPFIDTDQEI--------------EKRTG-----MSIAEIFEEEGEEGFRRLESEVLKELLA-- 60 (158)
T ss_pred CCCHHHHHHHHHHHHCCCEEECHHHH--------------HHHHC-----CCHHHHHHHHCHHHHHHHHHHHHHHHHC--
T ss_conf 89779999999999699978872999--------------98878-----8999999981989999999999999971--
Q ss_pred CHHHHHHHCCCEEEEECCCHHH
Q ss_conf 0000133259855998893089
Q 537021.9.peg.8 100 FTYNSRWDRSLFSCINRSTLYY 121 (133)
Q Consensus 100 ~~~~~~~~r~~~piivGGTglY 121 (133)
.....|-+||.-.+
T Consensus 61 --------~~~~VIstGGG~v~ 74 (158)
T pfam01202 61 --------EHNAVIATGGGAVL 74 (158)
T ss_pred --------CCCEEEEECCCCCC
T ss_conf --------69949980786025
No 325
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=92.94 E-value=0.13 Score=30.88 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
...+++|.||||+|||.+--++.-.+-++
T Consensus 27 ~~~lflI~G~nGsGKSTIlDAI~~aLYGk 55 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGK 55 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 78889998899997889999999998388
No 326
>pfam00931 NB-ARC NB-ARC domain.
Probab=92.94 E-value=0.083 Score=32.09 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=25.1
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 10058984999987987334499999998
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
+-.+...++|.|+|+-|+|||.||-.+.+
T Consensus 13 ~~~~~~~~vI~I~G~gGiGKTtLA~~v~~ 41 (285)
T pfam00931 13 LEMSENLGVVGIVGMGGVGKTTLAKQIYN 41 (285)
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 64898953999889995639999999971
No 327
>PRK04328 hypothetical protein; Provisional
Probab=92.93 E-value=0.12 Score=31.04 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECC
Q ss_conf 98499998798733449999999881-----98797500
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINAD 42 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~D 42 (133)
...+++|.||+|||||-||...+.+- ++-.+|.+
T Consensus 23 ~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~e 61 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 61 (250)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 996999982899998999999999998769977999972
No 328
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.11 Score=31.25 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.--+|--.
T Consensus 21 i~ge~~~iiGpSGsGKSTll~~i~GL~ 47 (214)
T cd03297 21 LNEEVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 299799999999735999999998499
No 329
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.90 E-value=0.13 Score=30.82 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9849999879873344999999988
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
..++.-|.||.+||||++++.+|..
T Consensus 18 ~G~ItEi~G~~gsGKT~l~lqla~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8839999999999899999999999
No 330
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.12 Score=31.20 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
.+..++.|+||+|||||.|.-.++--+ .|+|
T Consensus 30 ~~Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~I 63 (285)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63 (285)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 7998999999999809999999965988886089
No 331
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.90 E-value=0.17 Score=30.18 Aligned_cols=28 Identities=32% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+.++..|+||-|||||.|--.++.-++
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~~~l~ 53 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5997999989988899999999865678
No 332
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=92.89 E-value=0.12 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
....++.|+||.|||||.|.-.|+..++
T Consensus 31 ~~Ge~~~ilGpnGsGKSTLl~~i~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 1880999998999609999999967897
No 333
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.89 E-value=0.11 Score=31.30 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...+++|.|+|++|||.+++++|...
T Consensus 18 ~G~l~vi~g~pg~GKS~~~~~~a~~~ 43 (186)
T pfam03796 18 KGDLIIIAARPSMGKTAFALNIARNA 43 (186)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 88179999679998799999999999
No 334
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.89 E-value=0.21 Score=29.62 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=44.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC-C----CCCCHHHHH
Q ss_conf 49999879873344999999988198797500442116822242346768742340433144513-7----655899999
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA-Q----KSYSTGKWL 85 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~-~----e~~sv~~f~ 85 (133)
.=|+|+|-||||||.|...|....+. .+ .+.|=.-+.|-+...||..-=.-.| + -+.+..+-.
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~i~~-----------~e-RvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv 241 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGFIDS-----------DE-RVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV 241 (355)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC-----------CC-EEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCEEEHHHHH
T ss_conf 15999678788799999999715797-----------65-0899812366446998557886348877776558899999
Q ss_pred HHHHH
Q ss_conf 99999
Q 537021.9.peg.8 86 RYAIK 90 (133)
Q Consensus 86 ~~a~~ 90 (133)
+-+..
T Consensus 242 kn~LR 246 (355)
T COG4962 242 KNALR 246 (355)
T ss_pred HHHHH
T ss_conf 98753
No 335
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.89 E-value=0.11 Score=31.47 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 984999987987334499999998819879
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAI 38 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~I 38 (133)
-+..++..||-|+|||.+|..+|+.++++-
T Consensus 38 i~HAyLF~GprGtGKTT~ArilAkaLnC~~ 67 (462)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQN 67 (462)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 762343038998599999999999967999
No 336
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.86 E-value=0.19 Score=29.88 Aligned_cols=46 Identities=33% Similarity=0.447 Sum_probs=36.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 898499998798733449999999881-----987975004421168222423467687423
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTLRILTSRPSDQDMQS 64 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l~IgTaKps~~e~~~ 64 (133)
.+|-+|.++|.-|||||.-+-.||..+ ..-++++| |-+|..-||-.
T Consensus 95 ~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaD-----------t~RpaA~eQL~ 145 (433)
T PRK00771 95 LKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICAD-----------TWRPGAYEQLK 145 (433)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----------CCCHHHHHHHH
T ss_conf 8985899973788978999999999999779946785067-----------88368999999
No 337
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=92.85 E-value=0.1 Score=31.48 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8499998798733449999999881987
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
+..++..||-|+|||.+|..+|+.++++
T Consensus 37 ~HAyLF~GP~GtGKts~ArifAkaLnC~ 64 (557)
T PRK07270 37 SHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 (557)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 4044210899868999999999995799
No 338
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.85 E-value=0.44 Score=27.68 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC--CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCE
Q ss_conf 898499998798733449999999881--98797500442116822242346768742340
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF--NGAIINADSMQVYDTLRILTSRPSDQDMQSIP 66 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~--~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~ 66 (133)
.+..++.|+|+.|||||.++..+..-+ ++.+.+ ++ -.|.|-|+.. .+..++..+.
T Consensus 31 ~~GEilgivGeSGsGKSTl~~~ilgll~~~~~~~~-g~-i~~~g~dl~~--~~~~~~~~~~ 87 (327)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMA-EK-LEFNGQDLQR--ISEKERRNLV 87 (327)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-EE-EEECCEECCC--CCHHHHHHHH
T ss_conf 89999999999987899999999748898997654-27-9999999774--9999999863
No 339
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.84 E-value=0.12 Score=31.08 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=26.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-C-----CEEEECC----HHHHHCCCC
Q ss_conf 499998798733449999999881-9-----8797500----442116822
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF-N-----GAIINAD----SMQVYDTLR 51 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~-~-----~~IIs~D----S~QvYk~l~ 51 (133)
+..+|.+|||+|||..+..++.+. . -.++-+. ..|.++.+.
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~ 75 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 988998999960999999999998633899759999085999999998860
No 340
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.83 E-value=0.12 Score=31.16 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.++--+
T Consensus 29 ~~Ge~~aiiG~NGsGKSTLl~~l~Gl~ 55 (273)
T PRK13647 29 PEGSKTAILGPNGAGKSTLLLHLNGIY 55 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999975999999996698
No 341
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.83 E-value=0.12 Score=31.18 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+...+.|+||.|||||.|+--|+.-+.
T Consensus 28 ~~GE~vaivG~nGsGKSTL~~~l~Gll~ 55 (276)
T PRK13650 28 KQGEWLSIIGHNGSGKSTTVRLIDGLLE 55 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998999999999879999999973889
No 342
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.83 E-value=0.12 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
.+..++.|+||.|||||.|.-.++--+ .|+|
T Consensus 26 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I 59 (275)
T PRK13639 26 EEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSV 59 (275)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 8998999999999649999999973989996399
No 343
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.82 E-value=0.21 Score=29.61 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---------CCCEEEECCH
Q ss_conf 9849999879873344999999988---------1987975004
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK---------FNGAIINADS 43 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~---------~~~~IIs~DS 43 (133)
...+.-|.||-|||||+|++.||-. .++.++=.|+
T Consensus 18 ~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdt 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 78799999999984999999999998424753678962999953
No 344
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.12 Score=31.19 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||.|||||.|.--|+.-+
T Consensus 34 ~~Ge~vaivG~nGsGKSTLlk~l~Gll 60 (273)
T PRK13632 34 NEGEYVAILGHNGSGKSTISKILTGLL 60 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 499899999999986999999997387
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.81 E-value=0.12 Score=31.16 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9849999879873344999999988
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
...+++|.|+|++|||.++..+|..
T Consensus 29 ~GeL~viaarpg~GKT~f~~~~a~~ 53 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9808999968998699999999999
No 346
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.78 E-value=0.086 Score=31.98 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHH-HHCCCCCCCCC
Q ss_conf 89849999879873344999999988198797500442-11682224234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQ-VYDTLRILTSR 56 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Q-vYk~l~IgTaK 56 (133)
.+.+++.|+||.|||||.|.--|+.-+....-.-||=+ .+.|-+|.+..
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL~~~~~~~p~~G~I~~~g~~i~~~~ 73 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCC
T ss_conf 79989999999998199999999744502689981469999999998899
No 347
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.77 E-value=0.12 Score=31.16 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....+++|+||.|||||.|.-.+|.-.
T Consensus 48 ~~GE~~~ivG~SGsGKSTLLr~i~GL~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999899848999999997599
No 348
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.74 E-value=0.13 Score=31.00 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEE
Q ss_conf 898499998798733449999999881---987975
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIIN 40 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs 40 (133)
.+..++.|+||+|||||.|--.++--. .|+|+-
T Consensus 24 ~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~ 59 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 799899999999983999999997799998539999
No 349
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=92.71 E-value=0.12 Score=31.22 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8984999987987334499999998
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
....++.|+||.|||||.|.-.|+-
T Consensus 30 ~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 30 NAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 7998999999999999999999727
No 350
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=92.68 E-value=0.13 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..+++|+||.|||||.|.-.++.-.
T Consensus 48 ~~GEi~~lvGpSGsGKSTLLr~i~GL~ 74 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999734999999997599
No 351
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.65 E-value=0.12 Score=31.09 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.+|--.
T Consensus 23 ~~Ge~~~iiGpSGsGKSTLlr~i~Gl~ 49 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999635999999997499
No 352
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=92.65 E-value=0.15 Score=30.59 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH----CCCEEEECCHHHHHCCC
Q ss_conf 849999879873344999999988----19879750044211682
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHK----FNGAIINADSMQVYDTL 50 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~----~~~~IIs~DS~QvYk~l 50 (133)
.+=+.|+|.||||||.++--|.++ .++.||-.|---=|..+
T Consensus 23 ~rH~aIlg~TGsGKS~tv~vLl~~l~~~~~~~vlVfDpHgEY~~~ 67 (218)
T pfam01935 23 SRHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFDPHGEYGWL 67 (218)
T ss_pred HHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 421478726999769999999999985479978998288636323
No 353
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=92.65 E-value=0.44 Score=27.70 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
....++.|+||.|||||.|--.++--++
T Consensus 27 ~~Gei~~liGpNGaGKSTLl~~i~Gl~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3997999988999869999999967888
No 354
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.63 E-value=0.11 Score=31.23 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|.--|+.-+
T Consensus 28 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699899999999998999999996797
No 355
>PRK09694 hypothetical protein; Provisional
Probab=92.62 E-value=0.15 Score=30.52 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 5898499998798733449999999881
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...|-+++|--|||+|||+.|+.+|.++
T Consensus 300 ~~~PgL~IiEAptG~GKTEAAL~~A~~L 327 (878)
T PRK09694 300 PLAPGLTVIEAPTGSGKTETALAYAWKL 327 (878)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6799879997589997589999999999
No 356
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.58 E-value=0.14 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..+++|+||.|||||.|--.+|--.
T Consensus 24 ~~Ge~~~i~GpSG~GKSTlLr~iaGl~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999880999999997699
No 357
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.57 E-value=0.13 Score=30.90 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||+|||||.|.--++--+
T Consensus 30 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll 56 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 599899999999947999999997488
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.55 E-value=0.096 Score=31.71 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH--HCCCEEEECC
Q ss_conf 8984999987987334499999998--8198797500
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAH--KFNGAIINAD 42 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~--~~~~~IIs~D 42 (133)
.+..+++|+||.|||||.|-=.|.. .....-|..|
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~ 62 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62 (240)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 3897899989999988899999977868878649999
No 359
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.51 E-value=0.12 Score=31.18 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC---CCEEE--E-CCHHHHHCCCCCCCCCCCHHH----HCCCEEEECCEECC
Q ss_conf 8499998798733449999999881---98797--5-004421168222423467687----42340433144513
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKF---NGAII--N-ADSMQVYDTLRILTSRPSDQD----MQSIPHYLYGYVPA 75 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~---~~~II--s-~DS~QvYk~l~IgTaKps~~e----~~~v~H~lid~~~~ 75 (133)
..=++..||-|+|||.||..+|+.+ +-.++ + .|=++--|.-- +.+.-+.++ ...++--.+|.+-.
T Consensus 96 ~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~-~~~~~~e~~~l~~l~~~dLLIiDdlG~ 170 (242)
T PRK07952 96 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF-RNSETSEEQLLNDLSNVDLLVIDEIGV 170 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH-HCCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 871799789999789999999999998799499977999999999998-068756999999863189898730146
No 360
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=92.50 E-value=0.2 Score=29.83 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=46.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHH
Q ss_conf 499998798733449999999881987975004421168222423467687423404331445137655899999
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWL 85 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~ 85 (133)
.+|-+.|--|||||.++-.|+ .+|+.||.+|. +-+++ ...-++.-..-+.+++=++++++-..+-..-.
T Consensus 2 ~~IGLTGGIgsGKStv~~~l~-~~G~~viDaD~--iar~v---~~pg~~~~~~iv~~FG~~il~~dG~ldR~~L~ 70 (394)
T PRK03333 2 LRIGLTGGIGAGKSTVSATLA-QLGAVVVDGDV--LAREV---VEPGTEGLAALVEAFGDDILLADGALDRPALA 70 (394)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCEEEEHHH--HHHHH---HCCCHHHHHHHHHHHCHHHHCCCCCCCHHHHH
T ss_conf 499830675557999999999-87994998579--99999---43986899999998598963889735699999
No 361
>CHL00181 cbbX CbbX; Provisional
Probab=92.50 E-value=0.94 Score=25.73 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=60.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHHHHHCCCCCC-CCCCCHHHHCCCEEEECCEECCCCCCCH-
Q ss_conf 499998798733449999999881-------9879750044211682224-2346768742340433144513765589-
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF-------NGAIINADSMQVYDTLRIL-TSRPSDQDMQSIPHYLYGYVPAQKSYST- 81 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~QvYk~l~Ig-TaKps~~e~~~v~H~lid~~~~~e~~sv- 81 (133)
.-.+..||-|+|||.+|--+|+-+ .+.++-++..-.--+ .|| |+.-+.+-. ...+=+++=.+|-|+.
T Consensus 60 ~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~-yvG~Ta~kt~~~i---~~a~GGVLfIDEAY~L~ 135 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQ-YIGHTAPKTKEVL---KKAMGGVLFIDEAYYLY 135 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCC-CCCCCHHHHHHHH---HHCCCCEEEEECHHHHC
T ss_conf 5388878998679999999999999869955895899535884163-5352169999999---96459879982446535
Q ss_pred -----HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf -----999999999999998410000013325985599889308999984
Q 537021.9.peg.8 82 -----GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTY 126 (133)
Q Consensus 82 -----~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~ 126 (133)
.+|-.+|...+-.... -.++.+.+|+-|-.-..+.++
T Consensus 136 ~~~~~~dfg~eaidtLl~~me--------~~~~~lvvI~AGY~~eM~~fl 177 (287)
T CHL00181 136 KPDNERDYGAEAIEILLQVME--------NQRDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred CCCCCCCCHHHHHHHHHHHHH--------HCCCCEEEEEECCHHHHHHHH
T ss_conf 788999837999999999987--------079988999846789999999
No 362
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=92.49 E-value=0.085 Score=32.04 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=48.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---CC--EEEECCHHHHHCCCCCCCCCCCHHHHCCCE---------EEECCEE-
Q ss_conf 98499998798733449999999881---98--797500442116822242346768742340---------4331445-
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF---NG--AIINADSMQVYDTLRILTSRPSDQDMQSIP---------HYLYGYV- 73 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~---~~--~IIs~DS~QvYk~l~IgTaKps~~e~~~v~---------H~lid~~- 73 (133)
...|+++.||.|||||.|=.=+.--- .| .|+.-+ | ...+.+++..++ |-|++++
T Consensus 30 ~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~~-------L----~ga~~~~l~~~RR~iGyIFQ~HNLl~~LT 98 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQE-------L----KGASKKELVQVRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH-------H----CCCCHHHHHHHHHHCCCEECCCHHCHHHH
T ss_conf 764798437889846889998876256555604782201-------0----26788899999876391441200010001
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---------13765589999999999999998
Q 537021.9.peg.8 74 ---------PAQKSYSTGKWLRYAIKKIAEVQ 96 (133)
Q Consensus 74 ---------~~~e~~sv~~f~~~a~~~i~~i~ 96 (133)
|..+.++..+-...+.++++.+-
T Consensus 99 A~QNVqM~~eL~~~~~~~~~~~~a~~~L~~VG 130 (220)
T TIGR02982 99 ARQNVQMALELQPNLSAQEAREKARAMLEAVG 130 (220)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 77888648988761168899999999998606
No 363
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.49 E-value=0.13 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||+|||||.|.--++--+
T Consensus 31 ~~Ge~~~iiG~nGsGKSTLl~~l~Gll 57 (286)
T PRK13641 31 EDGSFVALIGHTGSGKSTLMQHFNALL 57 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699999999999839999999996598
No 364
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.47 E-value=0.14 Score=30.78 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+...+.|+||.|||||.|+--|+.-+
T Consensus 31 ~~Ge~~aiiG~sGsGKSTL~~~l~Gl~ 57 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999968999999996389
No 365
>CHL00176 ftsH cell division protein; Validated
Probab=92.45 E-value=0.16 Score=30.37 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCC--CCCC---HHHHCCCEE-EECCEECCCC---C
Q ss_conf 89849999879873344999999988198797500442116822242--3467---687423404-3314451376---5
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILT--SRPS---DQDMQSIPH-YLYGYVPAQK---S 78 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgT--aKps---~~e~~~v~H-~lid~~~~~e---~ 78 (133)
.-||=+++.||-|+|||-||-++|-+-+.+-+|+..-++- ++=+|. +|.- ..-+..-|+ -+||.+|.-- .
T Consensus 208 k~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~-e~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg 286 (631)
T CHL00176 208 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV-EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRG 286 (631)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHH-HHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCC
T ss_conf 6896589889899878899999856558846998837855-642155589999999999863996999871012011478
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHH---HHHHHCCCCCC
Q ss_conf 5899999999999999984100000133259855998893089---99984184357
Q 537021.9.peg.8 79 YSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYY---ARNTYCNKRKD 132 (133)
Q Consensus 79 ~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY---~~al~~~~~~d 132 (133)
-..+-=.++-.+.+.++.....+. +.+.-.|+.|-|+.- -.||++-.|.|
T Consensus 287 ~~~~gg~~e~e~tlnqLL~emDGf----~~~~gViViaATNrpd~LDpALlRPGRFD 339 (631)
T CHL00176 287 AGVGGGNDEREQTLNQLLTEMDGF----EGNKGVIVIAATNRIDILDAALLRPGRFD 339 (631)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCC----CCCCCEEEEEECCCCCCCCHHHCCCCCCC
T ss_conf 988898508999999999984288----87888699982588554568662688775
No 366
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.45 E-value=0.14 Score=30.65 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCC
Q ss_conf 898499998798733449999999881---98797500442116822242
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILT 54 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgT 54 (133)
.+...+.|+||.|||||.|+--++.-+ .|+|. +.|.++..
T Consensus 35 ~~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~I~-------i~G~~~~~ 77 (281)
T PRK13633 35 KKGEFLVILGHNGSGKSTIAKHMNALLLPSEGKVY-------VDGLDTSD 77 (281)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-------ECCEECCC
T ss_conf 79989999999998499999999758878885699-------99998788
No 367
>PTZ00202 tuzin; Provisional
Probab=92.44 E-value=0.47 Score=27.55 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=51.5
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHH-HHCCCEEEECCEECCCCCCCHHH
Q ss_conf 00589849999879873344999999988198797500442116822242346768-74234043314451376558999
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQ-DMQSIPHYLYGYVPAQKSYSTGK 83 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~-e~~~v~H~lid~~~~~e~~sv~~ 83 (133)
+-.+||+|+++.|.-|+|||.|.-.--++-+.+-+-+|-+- +++ -+.-++--.++.++. -=..-+
T Consensus 390 ld~aHPRIvV~TG~~GCGKSsLcRsAVrkE~~pav~VDVRg------------~EDtLRSVVKALgV~nve~--CGDlLd 455 (664)
T PTZ00202 390 MAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGG------------TEDTLRSVVRALGVSNVEV--CGDLLG 455 (664)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECC------------CCCHHHHHHHHHCCCCHHH--HCCHHH
T ss_conf 25668827998457887600888999987188769998268------------7651999999828997355--346999
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEE
Q ss_conf 99999999999984100000133259855998
Q 537021.9.peg.8 84 WLRYAIKKIAEVQKTVFTYNSRWDRSLFSCIN 115 (133)
Q Consensus 84 f~~~a~~~i~~i~~~~~~~~~~~~r~~~piiv 115 (133)
|..++...-... ..+.+|++|
T Consensus 456 FI~ea~~~A~~k-----------~~~~~P~lV 476 (664)
T PTZ00202 456 FVEEAMRGATVK-----------ASDGVPFLV 476 (664)
T ss_pred HHHHHHHHHHHH-----------CCCCCCEEE
T ss_conf 999999988985-----------079997799
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.44 E-value=0.14 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=19.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 984999987987334499999998
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
.+-+++|+||.|||||.|.-.|+-
T Consensus 21 p~GitaIvGpsGsGKSTLl~~i~~ 44 (197)
T cd03278 21 PPGLTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 898289999999988999999998
No 369
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=92.44 E-value=0.14 Score=30.70 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH-HCCCCCCCCCCCHHHHCCC
Q ss_conf 898499998798733449999999881987975004421-1682224234676874234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV-YDTLRILTSRPSDQDMQSI 65 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv-Yk~l~IgTaKps~~e~~~v 65 (133)
....++.|+|+.|||||.|+-.|+.-.. -+|=+| |.|-|+... +.+++...
T Consensus 36 ~~GE~l~ivGeSGsGKSTL~r~i~gl~~-----p~sG~I~~~g~~l~~~--~~~~~~~~ 87 (266)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNISWRGEPLAKL--NRAQRKAF 87 (266)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC-----CCCEEEEECCEECCCC--CHHHHHHH
T ss_conf 8998999999999779999999966999-----9962998899956758--99999997
No 370
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=92.41 E-value=0.15 Score=30.56 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
+..|.++|+||.+||||.|-..|...
T Consensus 1 ~~~ptvLllGl~~sGKT~Lf~~L~~~ 26 (181)
T pfam09439 1 SSQPAVIIAGLCDSGKTSLFTLLTTG 26 (181)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 99886999868999899999999759
No 371
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.37 E-value=0.14 Score=30.80 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
..-.++..||-|+||+.+|..+|+.++++
T Consensus 38 ~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~ 66 (395)
T PRK07940 38 MTHAWLFTGPPGSGRSNAARAFAAALQCT 66 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 66037636899878899999999996699
No 372
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.33 E-value=0.14 Score=30.79 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCC
Q ss_conf 898499998798733449999999881---987975004421168222423467
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPS 58 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps 58 (133)
.+...+.|+||.|||||.|.-.++--+ .|+|. +.|.+|...+..
T Consensus 31 ~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~V~-------i~G~~i~~~~~~ 77 (287)
T PRK13637 31 EDGEFVALIGHTGSGKSTLIQHLNGLLKPTSGKII-------IDGVDITDKKVK 77 (287)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-------ECCEECCCCCCC
T ss_conf 79989999999993999999999739988872699-------999998788867
No 373
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.33 E-value=0.11 Score=31.30 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=39.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE----CCHHHHHCCCCCCCCCCCHHHHCCCEEEECC
Q ss_conf 8499998798733449999999881987975----0044211682224234676874234043314
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIIN----ADSMQVYDTLRILTSRPSDQDMQSIPHYLYG 71 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs----~DS~QvYk~l~IgTaKps~~e~~~v~H~lid 71 (133)
...++..||=|+|||..|=-+||.+|++ -. |.....+++.+=|+.- +.-|..+.-|-.||
T Consensus 36 ~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~-DviEiDAASN~gVD 99 (363)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSL-DVIEIDAASNNGVD 99 (363)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCC-CEEEECCCCCCCHH
T ss_conf 6234502859976355899999986588-7877877775022776528986-66886486568788
No 374
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=92.31 E-value=0.1 Score=31.54 Aligned_cols=27 Identities=37% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
+++..+.|+|+-|||||.||==|-.=+
T Consensus 498 ~~n~k~tiVGmSGSGKsTLaKLLV~Ff 524 (710)
T TIGR01193 498 KKNEKITIVGMSGSGKSTLAKLLVGFF 524 (710)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 078548997367974899998752035
No 375
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.092 Score=31.81 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...-+.|+|+||||||.+.--+++.+
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 88768887799987899999997235
No 376
>PRK02224 chromosome segregation protein; Provisional
Probab=92.30 E-value=0.18 Score=30.11 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+-+.+|+||+|||||.+--++.-.+
T Consensus 22 ~~Gi~~I~G~NGsGKSsIldAI~~aL 47 (880)
T PRK02224 22 EDGVTVIHGLNGSGKSSLLEACFFAL 47 (880)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99858998999998899999999998
No 377
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.29 E-value=0.73 Score=26.39 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.++--+
T Consensus 24 ~~Gei~~liG~nGaGKSTLl~~i~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899899999999985999999997798
No 378
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=92.27 E-value=0.16 Score=30.42 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8984999987987334499999998
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
....++.|+||.|||||.|.-.++-
T Consensus 29 ~~Gei~~iiG~sGsGKSTLl~~i~g 53 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7997999998999819999999965
No 379
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=92.26 E-value=0.27 Score=28.96 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=31.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 58984999987987334499999998819879750
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINA 41 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~ 41 (133)
..++.-|+|.||--+|||.++.-|-+-++|.|||-
T Consensus 259 ~PKknCivi~GPPnTGKS~F~mSLi~fL~G~ViSf 293 (432)
T pfam00519 259 IPKKNCLVIYGPPDTGKSMFCMSLIKFLGGKVISF 293 (432)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 98524699989999667689999999849869996
No 380
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.26 E-value=0.16 Score=30.31 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCH-----HHHCCCEE-EECCEECCCC---C
Q ss_conf 8984999987987334499999998819879750044211682224234676-----87423404-3314451376---5
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSD-----QDMQSIPH-YLYGYVPAQK---S 78 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~-----~e~~~v~H-~lid~~~~~e---~ 78 (133)
.-||=+++.||-|+|||-||-++|.+-+.+.+|+..-++ -++=+|.+.--. +-+..-|+ -+||.+|.-- .
T Consensus 183 k~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef-~e~~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~ 261 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF-VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHH-HHEEEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCC
T ss_conf 799851777989987789999986455980899784773-0222530689999999999966997999953220366678
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHH---HHHHHCCCCCC
Q ss_conf 5899999999999999984100000133259855998893089---99984184357
Q 537021.9.peg.8 79 YSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYY---ARNTYCNKRKD 132 (133)
Q Consensus 79 ~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY---~~al~~~~~~d 132 (133)
-..+.=.++-.+.+.++.....+ ++.+.-.|+.+.|+.- -.||++-.|.|
T Consensus 262 ~~~~gg~~e~~~tlNqlL~EmDG----f~~~~~ViviaATNrpd~LD~ALlRPGRFD 314 (644)
T PRK10733 262 AGLGGGHDEREQTLNQMLVEMDG----FEGNEGIIVIAATNRPDVLDPALLRPGRFD 314 (644)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHC----CCCCCCEEEEEECCCCCCCCHHHHCCCCCC
T ss_conf 98889832888789999999548----888787699962699755477771688865
No 381
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.25 E-value=0.15 Score=30.49 Aligned_cols=27 Identities=26% Similarity=0.094 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.--|+--+
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~Gl~ 57 (280)
T PRK13649 31 LDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999599986999999996699
No 382
>KOG1808 consensus
Probab=92.24 E-value=0.083 Score=32.10 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=26.6
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 00589849999879873344999999988198797
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAII 39 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~II 39 (133)
+.++...-|+|-|||+||||.+.-.||++.+-.++
T Consensus 435 a~~~~~~pillqG~tssGKtsii~~la~~~g~~~v 469 (1856)
T KOG1808 435 AISSGKFPILLQGPTSSGKTSIIKELARATGKNIV 469 (1856)
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 99658998677547676811599999998546734
No 383
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.22 E-value=0.16 Score=30.34 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
.+..++.|+||.|||||.|.--++--
T Consensus 33 ~~GE~v~iiG~sGsGKSTLl~~i~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89989999999994099999999669
No 384
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.22 E-value=0.15 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
-+-.+++.||-|+||+.+|..+|+.+.++
T Consensus 27 l~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~ 55 (329)
T PRK08058 27 LAHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 66156557899988999999999997399
No 385
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=92.22 E-value=0.14 Score=30.64 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
-+..++..||-|+|||.+|..+|+.++++
T Consensus 37 i~HAyLF~GprGtGKts~Ari~AkaLnC~ 65 (563)
T PRK06674 37 VSHAYLFSGPRGTGKTSIAKVFAKAVNCE 65 (563)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 65034312899868999999999985799
No 386
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.20 E-value=0.14 Score=30.75 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
.....+.|+||+|||||.|.-.|+.-+ .|+|
T Consensus 25 ~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i 58 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf 8999999995899988999999869876998679
No 387
>KOG3347 consensus
Probab=92.20 E-value=0.17 Score=30.20 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH----HHHHCCCCCCCCCC
Q ss_conf 8499998798733449999999881987975004----42116822242346
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADS----MQVYDTLRILTSRP 57 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS----~QvYk~l~IgTaKp 57 (133)
.+-|+|.|+-|+|||.++-.||+.++.+-|++-- -++|.|.|-.-.-|
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~ 58 (176)
T KOG3347 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCH 58 (176)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHCCHHCCCCCCCCC
T ss_conf 7887986799988025999999973985674556776611021023223675
No 388
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.20 E-value=0.17 Score=30.28 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
.+...+.|+||.|||||.|.--|+.-. .|+|.
T Consensus 33 ~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~ 67 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67 (269)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 59989999999999799999999649799850999
No 389
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.16 E-value=0.14 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 898499998798733449999999881987
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.-+..++..||-|+|||..|-.+|+.+|++
T Consensus 36 ~i~hayLf~GprG~GKTs~Ari~akalnc~ 65 (541)
T PRK05563 36 RIAHAYLFCGTRGTGKTSTAKIFAKAVNCL 65 (541)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 932045303879958999999999995799
No 390
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.13 E-value=0.16 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
.+..+++|+||.|||||.|.--++.-. .|+|.
T Consensus 25 ~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~ 59 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59 (242)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 69989999999995699999999759999815999
No 391
>PTZ00243 ABC transporter; Provisional
Probab=92.13 E-value=0.12 Score=31.14 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=25.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEE
Q ss_conf 898499998798733449999999881---987975
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIIN 40 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs 40 (133)
.+.++.+|+||+|||||.|-..|-.++ .|+|..
T Consensus 684 ~~G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~ 719 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA 719 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 599789998999987999999996888435638997
No 392
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.17 Score=30.25 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.++.-.
T Consensus 25 ~~Ge~~~iiGpsGsGKSTLl~~i~gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999899999999833999999997499
No 393
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.11 E-value=0.17 Score=30.27 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..+++|+||.|||||.|---++--.
T Consensus 22 ~~Ge~~~ilGpSGsGKSTLl~li~Gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999955999999997699
No 394
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.10 E-value=0.93 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=29.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC-----EEEECCHHHHHCCC
Q ss_conf 49999879873344999999988198-----79750044211682
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNG-----AIINADSMQVYDTL 50 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~-----~IIs~DS~QvYk~l 50 (133)
.-|+++|+-++|||.|...+.+..-. .|.+.+.-+.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~ 50 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY 50 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECC
T ss_conf 799999999998899999996476765567614540432036226
No 395
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.08 E-value=0.17 Score=30.19 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.++.-.
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999972999999997599
No 396
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.07 E-value=0.17 Score=30.28 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.-.++--+
T Consensus 25 ~~Ge~~~lvGpnGaGKSTLl~~i~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999846999999997599
No 397
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.05 E-value=0.17 Score=30.18 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
.+..+++|+||.|||||.|--.++--
T Consensus 24 ~~Ge~~~ivGpSGsGKSTLL~~i~gL 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999984499999999819
No 398
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.03 E-value=0.28 Score=28.91 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=45.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEE
Q ss_conf 8984999987987334499999998819---87975004421168222423467687423404331445
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYV 73 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~ 73 (133)
.+..++.|+|-.|||||-++..+-.-++ +.|++.. =.|+|-|+.+-... ++..++-.-+..+
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~--i~f~g~~l~~l~~~--~~~~iRG~~I~mI 93 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE--ILFDGKDLLSLSEK--ELRKIRGKEIAMI 93 (316)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEE--EEECCCCCCCCCHH--HHHHHCCCEEEEE
T ss_conf 58968999838978899999999846688897486118--99889646669999--9986317568999
No 399
>KOG0054 consensus
Probab=91.99 E-value=0.17 Score=30.27 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879873344999999988
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~ 33 (133)
-+-|+|-||+|||.|..+|=+-
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054 1168 KVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 6888689899889999999961
No 400
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.99 E-value=0.18 Score=30.08 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.--++--+
T Consensus 23 ~~GE~v~iiG~nGaGKSTLl~~i~Gll 49 (233)
T PRK10771 23 ERGEQVAILGPSGAGKSTLLNLIAGFL 49 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999981999999996599
No 401
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=91.98 E-value=0.14 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC----CEEEECCHHHHH
Q ss_conf 999987987334499999998819----879750044211
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN----GAIINADSMQVY 47 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~----~~IIs~DS~QvY 47 (133)
-.+|..|||||||-++..++..+. -.++-+++.-+.
T Consensus 20 ~~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~~~L~ 59 (103)
T pfam04851 20 RGLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPRKDLL 59 (103)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 8699958999879999999999984699299990829999
No 402
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.2 Score=29.80 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=36.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC---CEE-------EECCHHHHHCCCCCCCCCCC
Q ss_conf 58984999987987334499999998819---879-------75004421168222423467
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN---GAI-------INADSMQVYDTLRILTSRPS 58 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~---~~I-------Is~DS~QvYk~l~IgTaKps 58 (133)
-...+.++|+||+|+|||.|-.-|+..+. |+| =+.+.-+.+|.+...+.+|-
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~ 405 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405 (559)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCC
T ss_conf 54896799988999978999999847577778448889931000687788867246279984
No 403
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.18 Score=30.05 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..+++|+||.|||||.|---++--.
T Consensus 24 ~~Ge~~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999983999999998599
No 404
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=0.68 Score=26.56 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 89849999879873344999999988198
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG 36 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~ 36 (133)
.-+-.+++.||-|+||+.+|..+|+.+-+
T Consensus 43 Rl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 43 RLHHALLFEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 96524653589980899999999999866
No 405
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=91.95 E-value=0.29 Score=28.77 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=52.3
Q ss_pred CCCEEEEECCCCCCH----HHHHHHHHHHCCC-----EEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCC
Q ss_conf 984999987987334----4999999988198-----7975004421168222423467687423404331445137655
Q 537021.9.peg.8 9 HTKAIFISGPTASGK----SLCAVNLAHKFNG-----AIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSY 79 (133)
Q Consensus 9 ~~~ii~I~GpTasGK----T~lai~LA~~~~~-----~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~ 79 (133)
.+=+|.|.|.-|||| |.++-.+.+.++. .||+-| ..||..-= +++ +-+|+. -+|+=+|+ .|
T Consensus 9 ~c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D--~YYK~~GP-~~~-~~~~r~-----~~NfDHP~-Af 78 (220)
T TIGR00235 9 TCIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQD--NYYKDQGP-SDL-EMAERK-----KTNFDHPD-AF 78 (220)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC--CCCCCCCC-CCH-HHHHHH-----CCCCCCCH-HC
T ss_conf 6179970176610156789999999999831400145775032--44588988-731-246431-----25889800-30
Q ss_pred CHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 8999999999999999841000001
Q 537021.9.peg.8 80 STGKWLRYAIKKIAEVQKTVFTYNS 104 (133)
Q Consensus 80 sv~~f~~~a~~~i~~i~~~~~~~~~ 104 (133)
+-..+.+-..++...-.-+.|.+..
T Consensus 79 D~~Ll~~Hl~nLk~g~~~~~P~Ydy 103 (220)
T TIGR00235 79 DNDLLYEHLKNLKNGSAIDVPVYDY 103 (220)
T ss_pred CHHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 3799999999984688022454254
No 406
>KOG0979 consensus
Probab=91.94 E-value=0.17 Score=30.18 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=25.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 5898499998798733449999999881987
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
..-+.+=.|+||-|||||.+..+++--++|+
T Consensus 39 ~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~ 69 (1072)
T KOG0979 39 LPGPSLNMIIGPNGSGKSSIVCAICLGLGGK 69 (1072)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 3788612687789897048899999972797
No 407
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.94 E-value=0.21 Score=29.70 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHH-HHHHHHHHCCCEEEECC
Q ss_conf 9998798733449-99999988198797500
Q 537021.9.peg.8 13 IFISGPTASGKSL-CAVNLAHKFNGAIINAD 42 (133)
Q Consensus 13 i~I~GpTasGKT~-lai~LA~~~~~~IIs~D 42 (133)
++++|||+||||. +.+.-....++.+|-.|
T Consensus 2 ~lvig~tGsGKt~~~vip~ll~~~~s~vv~D 32 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLLTWPGSVVVLD 32 (384)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7998899997318999999981899889994
No 408
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.89 E-value=0.18 Score=30.08 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
.+..++.|+||.|||||.|.--++--+ .|+|.
T Consensus 28 ~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~I~ 62 (277)
T PRK13652 28 GRKQRIAVIGPNGAGKSTLFKHFNGILKPTSGSVL 62 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 89989999999994799999999669999846999
No 409
>KOG0735 consensus
Probab=91.88 E-value=0.22 Score=29.55 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 984999987987334499999998819
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+.-|+|.||-|||||.|+-++++.+-
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~ 456 (952)
T KOG0735 430 RHGNILLNGPKGSGKTNLVKALFDYYS 456 (952)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 466189867998777699999998751
No 410
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.88 E-value=0.18 Score=30.05 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.-.++--+
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999986999999996699
No 411
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=91.86 E-value=0.29 Score=28.83 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=27.6
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 05898499998798733449999999881987
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
+.-.+++=+|+||-|||||++..+++--+++.
T Consensus 19 ~~~gp~lN~IiGpNGSGKSsIv~AI~lgLGG~ 50 (213)
T cd03277 19 FRPGPSLNMIIGPNGSGKSSIVCAICLGLGGK 50 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 95499757998899887899999999881898
No 412
>KOG0731 consensus
Probab=91.85 E-value=0.17 Score=30.14 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCC--CC---CHHHHCCCEE-EECCEECCCCCCC--
Q ss_conf 98499998798733449999999881987975004421168222423--46---7687423404-3314451376558--
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTS--RP---SDQDMQSIPH-YLYGYVPAQKSYS-- 80 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTa--Kp---s~~e~~~v~H-~lid~~~~~e~~s-- 80 (133)
-||=++++||-|+|||-||-++|-+-+.+-+|+-.-.. -++-.|-+ +. -+.-+...|| .++|.+|..-.--
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF-vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G 421 (774)
T KOG0731 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF-VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGG 421 (774)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHH-HHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 76751787899986789999885305896464133788-88760343488899998743269807971454200312556
Q ss_pred --HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHH
Q ss_conf --9999999999999998410000013325985599889308
Q 537021.9.peg.8 81 --TGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLY 120 (133)
Q Consensus 81 --v~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTgl 120 (133)
.+--..+....+.++.....+. ..+.-.|+.++|+.
T Consensus 422 ~~~~~~~~e~e~tlnQll~emDgf----~~~~~vi~~a~tnr 459 (774)
T KOG0731 422 KGTGGGQDEREQTLNQLLVEMDGF----ETSKGVIVLAATNR 459 (774)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CCCCCEEEEECCCC
T ss_conf 666788807888999887875277----67784799811688
No 413
>PRK08356 hypothetical protein; Provisional
Probab=91.85 E-value=0.29 Score=28.76 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 5898499998798733449999999881987975004
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
-.++-+|.|+|.-|||||.+|--| ++.|...+|+..
T Consensus 2 ~~~kmIIgitG~~gSGK~tva~~l-~~~G~~~~s~sd 37 (195)
T PRK08356 2 GVEKMIVGIAGKIAAGKTTVAKFL-EELGFCRISCSE 37 (195)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHH-HHCCCEEEECCH
T ss_conf 975269998589988789999999-986992884227
No 414
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.84 E-value=0.18 Score=30.00 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
.+..+++|+||.|||||.|.--++.-. .|+|.
T Consensus 25 ~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p~sG~i~ 59 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59 (214)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 59989999979995399999999629898864999
No 415
>PRK13542 consensus
Probab=91.81 E-value=0.55 Score=27.14 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH-HCCCCCCCCCC
Q ss_conf 898499998798733449999999881987975004421-16822242346
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV-YDTLRILTSRP 57 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv-Yk~l~IgTaKp 57 (133)
....++.|+||.|+|||.|--.|+..+. -|+=.| |.|-+|-...|
T Consensus 42 ~~Gei~~liGpNGaGKTTLlk~l~Gll~-----p~~G~I~~~G~~i~~~~~ 87 (224)
T PRK13542 42 APGDLLQVMGPNGSGKTSLLRVLSGLMP-----PAEGDLYWRGRAVRAGDP 87 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCEEEEECCEECCCCCH
T ss_conf 5997999999999999999999957978-----885289999999987998
No 416
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=91.78 E-value=0.19 Score=29.92 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.--+|--.
T Consensus 26 ~~GE~~~llGpSGsGKSTLlr~iaGL~ 52 (352)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLE 52 (352)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999899999999846999999997699
No 417
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=91.74 E-value=0.2 Score=29.74 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHH---HHCCC----EEEECCHHH
Q ss_conf 9998798733449999999---88198----797500442
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLA---HKFNG----AIINADSMQ 45 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA---~~~~~----~IIs~DS~Q 45 (133)
-+|+||||||||-|=--|. .++.. .||-.|..+
T Consensus 519 T~IfG~~G~GKTtLl~fL~a~~~ky~~~~a~~~~~fDkd~ 558 (931)
T TIGR00929 519 TLIFGPTGSGKTTLLNFLLAQLQKYKPNFALTIFAFDKDR 558 (931)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 7788888984699999999997424889870699988789
No 418
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.74 E-value=0.2 Score=29.82 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8984999987987334499999998
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
.+..+++|+||.|||||.|---++-
T Consensus 22 ~~Ge~~~i~GpSGsGKSTLL~~i~g 46 (206)
T TIGR03608 22 EKGKMVAIVGESGSGKSTLLNIIGL 46 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6998999987999709999999975
No 419
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.71 E-value=0.19 Score=29.92 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 98499998798733449999999881---9879
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
+..++.|+||.|||||.|---|+..+ .|+|
T Consensus 24 ~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I 56 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 798999997999769999999977878886079
No 420
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.67 E-value=0.15 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 984999987987334499999998819
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
+.|++.|+|.-+||||.|...|-..+.
T Consensus 1 m~Pii~ivG~s~SGKTTLi~kli~~l~ 27 (170)
T PRK10751 1 MIPLLAIAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 987799994699999999999999999
No 421
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.66 E-value=0.2 Score=29.80 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
....++.|+||.|||||.|.-.|+--+ .|+|.
T Consensus 24 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~sG~i~ 58 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL 58 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 79959999999999999999999667788852999
No 422
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.66 E-value=0.2 Score=29.83 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 5898499998798733449999999881987
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
..-+..++..||-|+|||..|--+|+.+|++
T Consensus 40 ~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~ 70 (507)
T PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9966347745879978899999999996799
No 423
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=91.65 E-value=0.19 Score=29.85 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.--++.-+
T Consensus 32 ~~Gei~~iiGpnGsGKSTLlk~i~Gl~ 58 (269)
T PRK11831 32 PRGKITAIMGPSGIGKTTLLRLIGGQI 58 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999399975999999996798
No 424
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=0.2 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.--++--.
T Consensus 28 ~~Ge~~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999957999999997599
No 425
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.60 E-value=0.21 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.-.++.-+
T Consensus 25 ~~Gei~~iiG~nGaGKSTLlk~i~Gl~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 499799998899998999999996467
No 426
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.60 E-value=0.23 Score=29.40 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.|+--+
T Consensus 24 ~~GEi~~liG~nGaGKSTll~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHCCCC
T ss_conf 599699998889999263778766986
No 427
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.54 E-value=0.22 Score=29.58 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
.+..++.|+||.|||||.|.-.++--+ .|+|.
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I~ 58 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 69989999889999899999999568577787389
No 428
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=91.53 E-value=0.26 Score=29.14 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
-.++.+++||-|||||..|-=|-+-+
T Consensus 558 PG~vvALVGPsGsGKStvaaLL~n~Y 583 (770)
T TIGR00958 558 PGEVVALVGPSGSGKSTVAALLQNLY 583 (770)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 86259986589983999999998557
No 429
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.53 E-value=0.12 Score=31.03 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=35.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH-HCCCCCCCCCCCHH
Q ss_conf 98499998798733449999999881987975004421-16822242346768
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV-YDTLRILTSRPSDQ 60 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv-Yk~l~IgTaKps~~ 60 (133)
...-++|.||.|+|||.|--.+|. .||-||-.+ |+|=++-+.+|..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-----CCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 885488767887668899999981-----369988528874733443485999
No 430
>KOG0738 consensus
Probab=91.52 E-value=0.28 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=28.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 499998798733449999999881987975004
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
|-++++||-|+|||-||-++|.+.+..-.|+-|
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEEEECH
T ss_conf 000556799974789999998861672787402
No 431
>KOG0079 consensus
Probab=91.50 E-value=0.069 Score=32.59 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=43.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC-C--------------CEEEECCHH--HHHCCCCCCCCCCCHHHHCCCEEEECCEECC
Q ss_conf 9998798733449999999881-9--------------879750044--2116822242346768742340433144513
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKF-N--------------GAIINADSM--QVYDTLRILTSRPSDQDMQSIPHYLYGYVPA 75 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~-~--------------~~IIs~DS~--QvYk~l~IgTaKps~~e~~~v~H~lid~~~~ 75 (133)
.+|+|-.|+|||+|++..|... . ..=|+.|++ |++.-.----=+.-.....+-+|-++=+.|.
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDV 90 (198)
T KOG0079 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90 (198)
T ss_pred HHEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 88326876457899999852555651488753357999860488689999861405799999988770388669999977
Q ss_pred C--CCC-CHHHHHHHHHHHHHH
Q ss_conf 7--655-899999999999999
Q 537021.9.peg.8 76 Q--KSY-STGKWLRYAIKKIAE 94 (133)
Q Consensus 76 ~--e~~-sv~~f~~~a~~~i~~ 94 (133)
+ |+| |+.+|++++.+-.+.
T Consensus 91 Tn~ESF~Nv~rWLeei~~ncds 112 (198)
T KOG0079 91 TNGESFNNVKRWLEEIRNNCDS 112 (198)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC
T ss_conf 6636567599999999854964
No 432
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.50 E-value=0.2 Score=29.78 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 8984999987987334499999998819
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
....++.|+||.|||||.|--.|+-.++
T Consensus 31 ~~Gei~~llG~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 0984999998999988999999837878
No 433
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=91.50 E-value=0.22 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH---CCCEEE
Q ss_conf 89849999879873344999999988---198797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK---FNGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~---~~~~II 39 (133)
....+..|+||.|||||.|.-.+|-- ..|+|.
T Consensus 22 ~~g~i~~l~GpsGaGKTTLl~~iaGl~~p~~G~I~ 56 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINLISGLTRPQKGRIV 56 (352)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 89989999999996299999999768999965999
No 434
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.49 E-value=0.2 Score=29.81 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCE
Q ss_conf 898499998798733449999999881---98797500442116822242346768742340
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPSDQDMQSIP 66 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~ 66 (133)
.+..++.|+||.|||||.|.--++.-. .|+|. |.|-+|...+ ..++...+
T Consensus 29 ~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I~-------~~g~~i~~~~--~~~~~~~R 81 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL-------VDGTDLTLLS--GKELRKAR 81 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-------ECCEECCCCC--HHHHHHHH
T ss_conf 99999999889805899999999679999980899-------9999989799--99999986
No 435
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.49 E-value=1.2 Score=25.01 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=23.9
Q ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 00589849999879873344999999988
Q 537021.9.peg.8 5 FLSTHTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 5 ~~~~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
..+.+..-|+|+|+.+||||.|-..+...
T Consensus 9 k~~~~~~Ki~ilG~~~sGKTsll~~l~~~ 37 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 55687758999979999889999998569
No 436
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.48 E-value=0.19 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8499998798733449999999881987
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.-.++..||-|+|||.+|-.+|+.+|++
T Consensus 38 ~haylf~G~rGvGKTt~Ari~Ak~lNC~ 65 (704)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (704)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 5237502789878889999999996799
No 437
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=91.47 E-value=0.59 Score=26.95 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 49999879873344999999988
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~ 33 (133)
+-++|+||.+||||.|-..|...
T Consensus 1 ptvLl~Gl~~aGKT~Lf~~L~~~ 23 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 95999907999899999999749
No 438
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.47 E-value=0.19 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 898499998798733449999999881---9879750044211682224234676874234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILTSRPSDQDMQSI 65 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v 65 (133)
.+..++.|+|++|||||.|+-.|+.-. .|+| .|.|-|+.. .+.+++...
T Consensus 39 ~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I-------~~~G~dl~~--~~~~~~~~~ 90 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-------YYQGQDLLK--ADPEAQKLL 90 (327)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE-------EECCEECCC--CCHHHHHHH
T ss_conf 8999999999983199999999956999886379-------989995577--999999997
No 439
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.43 E-value=0.58 Score=26.99 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH-HCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHH
Q ss_conf 898499998798733449999999881987975004421-168222423467687423404331445137655899999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV-YDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWL 85 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv-Yk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~ 85 (133)
....++.|+||-|+|||.|---++--+. .|+=+| +.|-||....+....+.++-+ ...........+|.+..
T Consensus 24 ~~Gei~~llGpNGAGKSTll~~i~Gl~~-----p~~G~I~~~g~di~~~~~~~r~r~gig~-~pQ~~~l~~~ltV~enl 96 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLPMHKRARLGIGY-LPQEASIFRKLTVEENI 96 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCEEEEECCEECCCCCHHHHHHCCEEE-CCCCCCCCCCCCHHHHH
T ss_conf 9995999999999619999999977999-----9862999999999999999999719798-77777678888899999
No 440
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.42 E-value=0.21 Score=29.71 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...+++|+|.++.|||+||+.+|...
T Consensus 193 ~g~LiIiaARPsmGKTafalnia~n~ 218 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 88689998546787459999999999
No 441
>PRK13808 adenylate kinase; Provisional
Probab=91.41 E-value=0.24 Score=29.34 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 9998798733449999999881987975004
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
|+++||-||||...|-.|+++++..-||.--
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~gi~hISTGD 33 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGD 33 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf 9997899998589999999986988675869
No 442
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=91.40 E-value=0.22 Score=29.53 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..+++|+||+|||||.|--.+|--.
T Consensus 29 ~~GE~~~llGpSG~GKTTlLr~iaGL~ 55 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999899999999745999999997776
No 443
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=91.39 E-value=0.22 Score=29.57 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
.+..++.|+||.|||||.|.-.+|--
T Consensus 28 ~~Ge~~~llGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999863699999999769
No 444
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.38 E-value=0.21 Score=29.59 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.--++.-.
T Consensus 34 ~~GE~v~ivG~sGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999899999999858999999996699
No 445
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.37 E-value=0.22 Score=29.56 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.++--.
T Consensus 25 ~~Ge~~~liG~nGsGKSTll~~i~Gl~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999980999999996389
No 446
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.35 E-value=0.25 Score=29.16 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-----CCCEEEEC
Q ss_conf 89849999879873344999999988-----19879750
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK-----FNGAIINA 41 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~-----~~~~IIs~ 41 (133)
....+++|.||+|+|||.||...+.. -++-.++.
T Consensus 30 p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ 68 (241)
T PRK06067 30 PFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITT 68 (241)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 799089998079988799999999999867982999994
No 447
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.29 E-value=0.2 Score=29.73 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8499998798733449999999881987
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
...++..||-|+|||.+|-.||+.+|++
T Consensus 37 ~HAYLFsGprG~GKTt~ARilAkaLNC~ 64 (775)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCA 64 (775)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 6337623788878889999999996689
No 448
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=91.28 E-value=0.22 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
....++.|+||.|||||.|.-.++-.+ .|+|.
T Consensus 30 ~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G~I~ 64 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 79979999888998899999998567888887399
No 449
>COG3596 Predicted GTPase [General function prediction only]
Probab=91.26 E-value=0.23 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=22.7
Q ss_pred CCCCEEE-EECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8984999-98798733449999999881987
Q 537021.9.peg.8 8 THTKAIF-ISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~-I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.++++.+ |+|.||+|||.|-.+|=.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~ 66 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKE 66 (296)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCE
T ss_conf 3686158974377776889999997026734
No 450
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=91.26 E-value=0.15 Score=30.49 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH---------HCCCEEEECCHHHHHCCCC
Q ss_conf 984999987987334499999998---------8198797500442116822
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAH---------KFNGAIINADSMQVYDTLR 51 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~---------~~~~~IIs~DS~QvYk~l~ 51 (133)
...+++|+|--|||||.|+--+.- -++|+-|+.|||.=||+|=
T Consensus 367 ~G~~VyIVG~NGCGK~TL~K~l~GLY~PQ~G~~LL~G~~V~~~~R~DYR~LF 418 (555)
T TIGR01194 367 SGDLVYIVGENGCGKSTLIKLLLGLYIPQEGELLLDGEAVSDDSRDDYRDLF 418 (555)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHH
T ss_conf 3528999648897389999999725878767544357545633202389999
No 451
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=91.26 E-value=0.83 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||-|||||.|--.|+..+
T Consensus 26 ~~GEi~gLIGPNGAGKSTLLk~I~Gll 52 (409)
T PRK09536 26 REGHLVGVVGPNGAGKTTLLRAMNGLI 52 (409)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999998727999999996688
No 452
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.23 E-value=0.24 Score=29.33 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEE
Q ss_conf 898499998798733449999999881---9879
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAI 38 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~I 38 (133)
....++.|+||.|||||.|.--|+... .|+|
T Consensus 35 ~~Ge~~~liG~NGaGKSTLl~~l~gl~~p~~G~I 68 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 7998999999999809999999956889987389
No 453
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.22 E-value=0.22 Score=29.52 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 98499998798733449999999881987
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
-...++..||-|+|||.+|--+|+.+|++
T Consensus 37 ~~haylf~G~rG~GKtt~ari~ak~lnc~ 65 (643)
T PRK07994 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (643)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 66348745899888889999999996799
No 454
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.22 E-value=0.23 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 898499998798733449999999881987
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.-+-.+++.||.|+||+.+|..+|+.+-++
T Consensus 17 Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~ 46 (290)
T PRK05917 17 KVPSAILLHGQDLSNLSQYAYELASLILLE 46 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 966068768999865999999999998578
No 455
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=91.21 E-value=0.89 Score=25.87 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=41.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-------CCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHH
Q ss_conf 8499998798733449999999881-------987975004421168222423467687423404331445137655899
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKF-------NGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTG 82 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~-------~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~ 82 (133)
.+=++|.|.|+||||.+-..+...+ ...++-+| +|+- .-......+|....+ ..+...+.
T Consensus 38 ~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD----~K~~-------~~~~~~~~~h~~~~~--~~d~e~~~ 104 (202)
T pfam01580 38 MPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLID----PKGG-------ELAALEDLPHLLSAV--ATDPEDAL 104 (202)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC----CCCC-------CHHHHHHCCCCCCCC--CCCHHHHH
T ss_conf 8868996589998009999999999873796206999974----8961-------267676356544337--68999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q 537021.9.peg.8 83 KWLRYAIKKIAEV 95 (133)
Q Consensus 83 ~f~~~a~~~i~~i 95 (133)
++.+...+.+++-
T Consensus 105 ~~l~~l~~em~rR 117 (202)
T pfam01580 105 SALRALVAEMERR 117 (202)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 456
>KOG2170 consensus
Probab=91.17 E-value=0.33 Score=28.49 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=49.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 58984999987987334499999998819879750044211682224234676874234043314451376558999999
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
..+|-++..-|+||+||+..|--||+.+--. -++...-||++...+-.++-.+.+|++
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~----------------------Gl~S~~V~~fvat~hFP~~~~ie~Yk~ 164 (344)
T KOG2170 107 PRKPLVLSFHGWTGTGKNYVAEIIAENLYRG----------------------GLRSPFVHHFVATLHFPHASKIEDYKE 164 (344)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC----------------------CCCCHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9987589830899875648999999998751----------------------125626887655415997678999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q 537021.9.peg.8 87 YAIKKIAEVQ 96 (133)
Q Consensus 87 ~a~~~i~~i~ 96 (133)
+..+.|.+..
T Consensus 165 eL~~~v~~~v 174 (344)
T KOG2170 165 ELKNRVRGTV 174 (344)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 457
>COG2262 HflX GTPases [General function prediction only]
Probab=91.14 E-value=0.53 Score=27.22 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH--------------------C--CCEEEECCHHHHHCCCC---CCCCCCCHHH
Q ss_conf 589849999879873344999999988--------------------1--98797500442116822---2423467687
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHK--------------------F--NGAIINADSMQVYDTLR---ILTSRPSDQD 61 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~--------------------~--~~~IIs~DS~QvYk~l~---IgTaKps~~e 61 (133)
.+..+.+.++|=|-+|||.|=..|... + +..++=.|.+-+-++|+ |-.=|-|-||
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 16997589873234449999988724571304666421057404898079964998657567155986799999998987
Q ss_pred HCCCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 423404331445137655899999999999999984
Q 537021.9.peg.8 62 MQSIPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQK 97 (133)
Q Consensus 62 ~~~v~H~lid~~~~~e~~sv~~f~~~a~~~i~~i~~ 97 (133)
-... --++-++|.+++ ......+...+.++++..
T Consensus 269 ~~~a-DlllhVVDaSdp-~~~~~~~~v~~vL~el~~ 302 (411)
T COG2262 269 VKEA-DLLLHVVDASDP-EILEKLEAVEDVLAEIGA 302 (411)
T ss_pred HHCC-CEEEEEEECCCH-HHHHHHHHHHHHHHHCCC
T ss_conf 6227-779997406885-189999999999997488
No 458
>KOG0953 consensus
Probab=91.12 E-value=0.19 Score=29.94 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHH--------------------HHHHHCCCEEEECC
Q ss_conf 898499998798733449999--------------------99988198797500
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAV--------------------NLAHKFNGAIINAD 42 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai--------------------~LA~~~~~~IIs~D 42 (133)
.+.+||+=+|||-||||.=|+ ++.+++++.=|-||
T Consensus 189 ~~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCd 243 (700)
T KOG0953 189 IRRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCD 243 (700)
T ss_pred HHHEEEEEECCCCCCHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4315898757888842579999875402660026089899999987643288733
No 459
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.12 E-value=0.22 Score=29.52 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|||||.|.--|+-+.
T Consensus 31 ~~Ge~~~llGpnGaGKSTLl~~l~g~~ 57 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 288399999999998899999983798
No 460
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.09 E-value=0.24 Score=29.28 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8984999987987334499999998
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
.+...++++||+|||||.+---+|-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4797999989998888999999968
No 461
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.06 E-value=0.24 Score=29.29 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEE
Q ss_conf 898499998798733449999999881---98797
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAII 39 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~II 39 (133)
....++.|+||.|||||.|.-.++--. .|+|+
T Consensus 36 ~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~ 70 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGDLL 70 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 79989999989988899999999658988887089
No 462
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.03 E-value=1.2 Score=24.98 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=35.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 5898499998798733449999999881-----98797500442116822242346768742
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTLRILTSRPSDQDMQ 63 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l~IgTaKps~~e~~ 63 (133)
...|-+|..+|=-|||||.-+-.||+.+ ..-+++|| |-+|..-||.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD-----------~~RpAA~eQL 147 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD-----------TYRPAAIEQL 147 (451)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----------CCCHHHHHHH
T ss_conf 89985899981567974868999999999749945898505-----------6786899999
No 463
>PRK10908 cell division protein FtsE; Provisional
Probab=91.02 E-value=0.24 Score=29.28 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.-.++--.
T Consensus 26 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999807999999996599
No 464
>PRK10416 cell division protein FtsY; Provisional
Probab=91.02 E-value=1.3 Score=24.80 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCH
Q ss_conf 5898499998798733449999999881-----987975004
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADS 43 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS 43 (133)
..+|-+|+++|.-|||||.-.-.||+.+ ..-++.+|-
T Consensus 292 ~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DT 333 (499)
T PRK10416 292 GKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 333 (499)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999879999747878789899999999997799537884066
No 465
>KOG3079 consensus
Probab=90.99 E-value=0.36 Score=28.20 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=33.1
Q ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 0589849999879873344999999988198797500
Q 537021.9.peg.8 6 LSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINAD 42 (133)
Q Consensus 6 ~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~D 42 (133)
-..+++||+++|+-||||-...-.++++++-.=+|+.
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaG 40 (195)
T KOG3079 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAG 40 (195)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEECHH
T ss_conf 5457988999768988822699999997695463287
No 466
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.99 E-value=0.24 Score=29.30 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
....++.|+||.|||||.|.-.|+-.
T Consensus 24 ~~Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79989999968999999999997077
No 467
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=90.98 E-value=0.25 Score=29.17 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|---||--.
T Consensus 27 ~~Ge~~~llGpsG~GKSTllr~i~Gl~ 53 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999736999999997799
No 468
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=90.97 E-value=0.29 Score=28.81 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8499998798733449999999881987
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.+-.+|+-|||+|||-+|...+.+++..
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~ 82 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRS 82 (442)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 7867999679998899999999982698
No 469
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.97 E-value=0.24 Score=29.33 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 898499998798733449999999881987
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA 37 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~ 37 (133)
.-+-.+++.||-|+||+.+|..+|+.+-++
T Consensus 24 rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~ 53 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 942068758999878999999999998379
No 470
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=90.95 E-value=0.29 Score=28.82 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 84999987987334499999998819
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFN 35 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~ 35 (133)
.+-+.|+||||||||.+...|-+-+.
T Consensus 1195 GqkVaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265 1195 KKTTAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98899989999839999999997763
No 471
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=90.95 E-value=0.25 Score=29.24 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
.+..+++|+||.|||||.+.-.+|--
T Consensus 30 ~~Ge~~~llGpSG~GKTTlLr~iaGl 55 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999964999999999769
No 472
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.95 E-value=0.23 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99998798733449999999881987975
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIIN 40 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs 40 (133)
=+++.||-|.|||.||.-+|++++..+-.
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~~~ 81 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 05765889988999999999986888156
No 473
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.94 E-value=0.18 Score=30.08 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCC
Q ss_conf 84999987987334499999998819879750044211682224234
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSR 56 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaK 56 (133)
.|++.|+|...||||.|...|.+.+.. ||+.+|+-|
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~-----------~G~~V~~iK 36 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSA-----------RGLRVAVIK 36 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHH-----------CCCEEEEEE
T ss_conf 929999967999999999999999997-----------798598997
No 474
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=90.90 E-value=0.33 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=27.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCH
Q ss_conf 499998798733449999999881-----987975004
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF-----NGAIINADS 43 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS 43 (133)
|+|+..|-=|+|||.+|..+|..+ +.-+||.|.
T Consensus 1 r~i~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDP 38 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98999689855489999999999996899499995898
No 475
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=90.86 E-value=0.15 Score=30.62 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC----CCEEEECCHHH
Q ss_conf 898499998798733449999999881----98797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF----NGAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~----~~~IIs~DS~Q 45 (133)
.+..+++|.||||||||..--...-.. ++-|+--+-+.
T Consensus 63 ~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRR 104 (845)
T COG1643 63 EQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRR 104 (845)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 869789986799887587889999960016687599658438
No 476
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=90.84 E-value=0.84 Score=26.01 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-------CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCC
Q ss_conf 58984999987987334499999998819-------87975004421168222423467687423404331445137655
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN-------GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSY 79 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~-------~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~ 79 (133)
...+=+|.|+||-|+|||.+|-.|+..+. .++|-.|-...+ .+.+. ++.+.+-.-..|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~-----------n~~L~--~~glm~rKGfPeSy 145 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYP-----------NAVLD--ERGLMARKGFPESY 145 (283)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-----------HHHHH--HCCCCCCCCCCCCC
T ss_conf 888879996057665577899999999963889873378714545467-----------67752--21220018998535
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 89999999999999
Q 537021.9.peg.8 80 STGKWLRYAIKKIA 93 (133)
Q Consensus 80 sv~~f~~~a~~~i~ 93 (133)
++..|.+....+-+
T Consensus 146 D~~~ll~fl~~vK~ 159 (283)
T COG1072 146 DVAALLRFLSDVKA 159 (283)
T ss_pred CHHHHHHHHHHHHC
T ss_conf 68999999999965
No 477
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.80 E-value=0.95 Score=25.69 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=34.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHH-HCCCCCCCCCCCHHHHCCC
Q ss_conf 898499998798733449999999881987975004421-1682224234676874234
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQV-YDTLRILTSRPSDQDMQSI 65 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~Qv-Yk~l~IgTaKps~~e~~~v 65 (133)
....++.|+||.|+|||.|.-.++--+. .||=++ +.|-++....|...-+.++
T Consensus 24 ~~Gei~~liGpNGaGKSTL~~~i~Gl~~-----p~~G~I~~~G~~i~~~~~~~~~r~gi 77 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC-----CCCEEEEECCEECCCCCHHHHHHCCE
T ss_conf 9997999999999409999999977999-----99549999999999999899998295
No 478
>PRK05748 replicative DNA helicase; Provisional
Probab=90.73 E-value=0.27 Score=28.97 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
...+++|.|.++.|||+||+.+|...
T Consensus 202 ~g~LiviaaRP~mGKTa~alnia~~~ 227 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNV 227 (448)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 67379998479987689999999999
No 479
>KOG0739 consensus
Probab=90.73 E-value=0.36 Score=28.27 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=29.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEE---ECCHHHHH
Q ss_conf 849999879873344999999988198797---50044211
Q 537021.9.peg.8 10 TKAIFISGPTASGKSLCAVNLAHKFNGAII---NADSMQVY 47 (133)
Q Consensus 10 ~~ii~I~GpTasGKT~lai~LA~~~~~~II---s~DS~QvY 47 (133)
-+-|++.||-|+|||.||-+.|..-+..-. |.|-+.-+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739 166 WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 42578867999757799999874147706873017889987
No 480
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=90.72 E-value=1.6 Score=24.38 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCH
Q ss_conf 58984999987987334499999998819-----8797500442116822242346768742340433144513765589
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYST 81 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv 81 (133)
...+-+|+.+|=-|.|||.+|..|++.++ +.|-|+.- ||--..+.. ..| ++.+|+-+-++
T Consensus 10 ~~~klvIvmVGLPARGKS~ia~kl~RYL~W~g~~~kvFn~G~---yRR~~~~~~---------~~~---~ffdp~n~~~~ 74 (223)
T pfam01591 10 TNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGE---YRRSAVKAY---------SNY---EFFRPDNTEAM 74 (223)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHH---HHHHHCCCC---------CCC---CCCCCCCHHHH
T ss_conf 689889999899999889999999999865699805842637---887631899---------994---11389998999
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEE
Q ss_conf 9999999999999984100000133259855998
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCIN 115 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piiv 115 (133)
..=.+.|..+++++...+. -+.|.+.|+=
T Consensus 75 ~~R~~~a~~~l~dl~~~l~-----~~~G~VaI~D 103 (223)
T pfam01591 75 KIREQCALAALKDVLAYLN-----EESGQVAIFD 103 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HCCCEEEEEE
T ss_conf 9999999999999999998-----5898299996
No 481
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.72 E-value=0.29 Score=28.78 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEECCHHHHHCCCCCCC
Q ss_conf 898499998798733449999999881---98797500442116822242
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF---NGAIINADSMQVYDTLRILT 54 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~---~~~IIs~DS~QvYk~l~IgT 54 (133)
....++.|+||-|||||.|.--++..+ .|+|. |.+-+|-.
T Consensus 25 ~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~-------~~~~~i~~ 67 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL-------FERQSIKK 67 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-------ECCEECCC
T ss_conf 79979999889998799999999778588985699-------99986463
No 482
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.68 E-value=0.29 Score=28.81 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++.|+||.|+|||.|.-.|+-.+
T Consensus 23 ~~Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799799998788999899999995884
No 483
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=90.68 E-value=0.19 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 5898499998798733449999999881
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
-...++++++|+-|||||.|+.=|.+=+
T Consensus 385 ~~~G~~vALVGRSGSGKsTlv~LlPRFy 412 (603)
T TIGR02203 385 VEPGETVALVGRSGSGKSTLVNLLPRFY 412 (603)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 1587359987068853899985523660
No 484
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=90.65 E-value=0.14 Score=30.65 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=39.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEEC
Q ss_conf 984999987987334499999998819---879750044211682224234676874234043314451
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVP 74 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~ 74 (133)
-...+++.||+|||||.+==.|-..+- |.|..-- .|-=|==++-++-|.-.++.+=+++++
T Consensus 33 aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H-----~G~~~DL~~a~pr~vl~vRr~tiGYVS 96 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH-----EGAWVDLAQASPREVLEVRRKTIGYVS 96 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEE-----CCHHHHHHCCCHHHHHHHHHHHCCCEE
T ss_conf 6735885368887678999976630474686777762-----404767507684577877300335155
No 485
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=90.62 E-value=0.29 Score=28.84 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
....+++|+||+|||||.|--.+|--
T Consensus 28 ~~Ge~~~llGpSG~GKtTlLr~iaGl 53 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999999999953599999999769
No 486
>COG4240 Predicted kinase [General function prediction only]
Probab=90.55 E-value=0.28 Score=28.94 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---C---CEEEECC
Q ss_conf 98499998798733449999999881---9---8797500
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF---N---GAIINAD 42 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~---~---~~IIs~D 42 (133)
.|-++.|.||-|||||.+|..+-..+ + ..-.|.|
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 9639985268887653599999999997365306886645
No 487
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.50 E-value=0.24 Score=29.28 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 98499998798733449999999881
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
....++|+||+|||||.|.--|+.-+
T Consensus 490 ~Ge~vaIvG~sGsGKSTL~kll~Gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCCCC
T ss_conf 99789998058987889999855675
No 488
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=90.46 E-value=0.16 Score=30.44 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998798733449999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLA 31 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA 31 (133)
=+.++|+|++|||.|.-.|-
T Consensus 2 r~~f~G~~gCGKTTL~q~L~ 21 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ 21 (144)
T ss_pred EEEEEECCCCCHHHHHHHCC
T ss_conf 17887158887443543116
No 489
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.41 E-value=0.32 Score=28.55 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8984999987987334499999998
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAH 32 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~ 32 (133)
.+..++.|+||.|||||.|.--++-
T Consensus 26 ~~Ge~~~iiG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7998999999999719999999965
No 490
>CHL00175 minD septum-site determining protein; Validated
Probab=90.41 E-value=1.1 Score=25.28 Aligned_cols=40 Identities=35% Similarity=0.509 Sum_probs=30.1
Q ss_pred EEEECCCCCEEEEE-CCCCCCHHHHHHHHHHHC-----CCEEEECC
Q ss_conf 11005898499998-798733449999999881-----98797500
Q 537021.9.peg.8 3 MMFLSTHTKAIFIS-GPTASGKSLCAVNLAHKF-----NGAIINAD 42 (133)
Q Consensus 3 ~~~~~~~~~ii~I~-GpTasGKT~lai~LA~~~-----~~~IIs~D 42 (133)
|..|++..|+|.|+ |=-|+|||.++.+||-.+ ..-+|-+|
T Consensus 6 ~~~~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D 51 (279)
T CHL00175 6 MTIVATMTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 51 (279)
T ss_pred CHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 3122598869999748998448999999999999789988999578
No 491
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.40 E-value=0.23 Score=29.44 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=23.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH-----CCCEEEEC--CHHHHHC
Q ss_conf 999879873344999999988-----19879750--0442116
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHK-----FNGAIINA--DSMQVYD 48 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~-----~~~~IIs~--DS~QvYk 48 (133)
.+|.||+|||||-||...+-+ -++--+|. +.-|+.+
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf 1587689999999999999999876997899995079999999
No 492
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=90.38 E-value=0.29 Score=28.78 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH---HHCC-CEEEECCHHHHHC
Q ss_conf 98499998798733449999999---8819-8797500442116
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLA---HKFN-GAIINADSMQVYD 48 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA---~~~~-~~IIs~DS~QvYk 48 (133)
...=-+|+||||+|||-|.--|+ .+++ ..|+=.|-.+=|+
T Consensus 435 d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~ 478 (796)
T COG3451 435 DVGHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAY 478 (796)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 76974998898887899999999999874598189984897357
No 493
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.36 E-value=0.54 Score=27.18 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---CCCEEEECCH
Q ss_conf 9849999879873344999999988---1987975004
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK---FNGAIINADS 43 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~---~~~~IIs~DS 43 (133)
...++.|.|+-++|||.|++.+|.. .+..++=.|.
T Consensus 18 ~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yidt 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 88799998999984999999999998636986999966
No 494
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.33 E-value=0.3 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99998798733449999999881987975
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIIN 40 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs 40 (133)
-+++.||-|.|||.||.-+|.+++..+-.
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~ 82 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKI 82 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 47864799876888999999985677376
No 495
>PRK06761 hypothetical protein; Provisional
Probab=90.32 E-value=0.64 Score=26.73 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCC
Q ss_conf 984999987987334499999998819879750044211682
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTL 50 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l 50 (133)
++|+|+|=|--|||||..|-.|++.+..-=++ .-+|.+-
T Consensus 1 m~kLIiIEGlPGsGKSTta~~l~d~L~~~g~~---v~~~~Eg 39 (281)
T PRK06761 1 MTKLIIIEGLPGFGKSTTAHLLNDKLSQLKIE---VELFVEG 39 (281)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---EEEEEEC
T ss_conf 96179996689998014999999999866985---3899507
No 496
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=90.28 E-value=0.28 Score=28.89 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE-EEECCHHHHHCCCCCCCCCCCHHHHCCCE
Q ss_conf 898499998798733449999999881987-97500442116822242346768742340
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGA-IINADSMQVYDTLRILTSRPSDQDMQSIP 66 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~-IIs~DS~QvYk~l~IgTaKps~~e~~~v~ 66 (133)
.+..++.|+|+.|||||.|+..+..-+... .++.. =.|.|-+|..- +..++..++
T Consensus 40 ~~GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~--I~~~G~~i~~~--~~~~~~~~r 95 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS--ATFNGREILNL--PEKELNKLR 95 (330)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE--EEECCEECCCC--CHHHHHHHH
T ss_conf 899899998689877999999997688888833589--99999986658--999999863
No 497
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=90.20 E-value=0.33 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 898499998798733449999999881
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF 34 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~ 34 (133)
.+..++.|+||.|||||.|.--+|--.
T Consensus 41 ~~GE~~~llGpSGsGKSTLlr~iaGl~ 67 (378)
T PRK09452 41 NNGEFLTLLGPSGCGKTTVLRLIAGFE 67 (378)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999899999899976999999997699
No 498
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.20 E-value=0.41 Score=27.88 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 89849999879873344999999988198-7975004421168222423467687423
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSMQVYDTLRILTSRPSDQDMQS 64 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~QvYk~l~IgTaKps~~e~~~ 64 (133)
.++++-+++||.|||||.|--.+.+-..- +-.-++---.|.|-||-..+....+++.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr 88 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR 88 (253)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCEECCCCCCCHHHHHH
T ss_conf 5780699888988678889999875411566656878998888243577779999987
No 499
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=90.18 E-value=0.18 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=18.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 898499998798733449999999
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLA 31 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA 31 (133)
.++.+++|+|.||||||.--=...
T Consensus 87 ~~nqVvii~GeTGsGKTTQiPq~~ 110 (1295)
T PRK11131 87 RDHQVVIVAGETGSGKTTQLPKIC 110 (1295)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHH
T ss_conf 979969997689998788999999
No 500
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.16 E-value=0.35 Score=28.33 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89849999879873344999999988
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
.....+.|+||.|||||.|=--+|--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79979999899978899999999687
Done!