HHsearch alignment for GI: peg_887 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=93.85  E-value=0.12  Score=31.16  Aligned_cols=40  Identities=28%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHHHH
Q ss_conf             898499998798733449999999---8819879750044211
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQVY   47 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~QvY   47 (133)
T Consensus        50 P~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~   92 (322)
T pfam00154        50 PKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL   92 (322)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHC
T ss_conf             7870899988987778999999999997349938998536605