HHsearch alignment for GI: peg_887 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=93.85 E-value=0.12 Score=31.16 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHHHH
Q ss_conf 898499998798733449999999---8819879750044211
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQVY 47 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~QvY 47 (133)
T Consensus 50 P~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~ 92 (322)
T pfam00154 50 PKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 92 (322)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHC
T ss_conf 7870899988987778999999999997349938998536605