HHsearch alignment for GI: peg_887 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.71 E-value=0.15 Score=30.47 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=42.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCC-CCCCCCCCCHH---HHCCCEEEECCEECCCCCCCH
Q ss_conf 499998798733449999999881-----987975004421168-22242346768---742340433144513765589
Q 537021.9.peg.8 11 KAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDT-LRILTSRPSDQ---DMQSIPHYLYGYVPAQKSYST 81 (133)
Q Consensus 11 ~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~-l~IgTaKps~~---e~~~v~H~lid~~~~~e~~sv 81 (133)
T Consensus 35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l--~~~ 112 (219)
T pfam00308 35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDALRDNKIEAFKKSYRNVDLLLIDDIQFL--AGK 112 (219)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCHHHH--CCC
T ss_conf 826998899998889999999999984999828884399999988999981888899999763233652236765--686
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999984
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQK 97 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~ 97 (133)
T Consensus 113 ~~~ee~lf~l~N~~~~ 128 (219)
T pfam00308 113 EKTQEEFFHTFNALHE 128 (219)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 4789999999999997