HHsearch alignment for GI: peg_887 and conserved domain: pfam00308

>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.71  E-value=0.15  Score=30.47  Aligned_cols=85  Identities=12%  Similarity=0.133  Sum_probs=42.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCC-CCCCCCCCCHH---HHCCCEEEECCEECCCCCCCH
Q ss_conf             499998798733449999999881-----987975004421168-22242346768---742340433144513765589
Q 537021.9.peg.8   11 KAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDT-LRILTSRPSDQ---DMQSIPHYLYGYVPAQKSYST   81 (133)
Q Consensus        11 ~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~-l~IgTaKps~~---e~~~v~H~lid~~~~~e~~sv   81 (133)
T Consensus        35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l--~~~  112 (219)
T pfam00308        35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDALRDNKIEAFKKSYRNVDLLLIDDIQFL--AGK  112 (219)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCHHHH--CCC
T ss_conf             826998899998889999999999984999828884399999988999981888899999763233652236765--686


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999984
Q 537021.9.peg.8   82 GKWLRYAIKKIAEVQK   97 (133)
Q Consensus        82 ~~f~~~a~~~i~~i~~   97 (133)
T Consensus       113 ~~~ee~lf~l~N~~~~  128 (219)
T pfam00308       113 EKTQEEFFHTFNALHE  128 (219)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             4789999999999997