HHsearch alignment for GI: peg_887 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.82  E-value=0.03  Score=34.78  Aligned_cols=29  Identities=24%  Similarity=0.408  Sum_probs=24.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCE--EEEC
Q ss_conf             9998798733449999999881987--9750
Q 537021.9.peg.8   13 IFISGPTASGKSLCAVNLAHKFNGA--IINA   41 (133)
Q Consensus        13 i~I~GpTasGKT~lai~LA~~~~~~--IIs~   41 (133)
T Consensus        53 ~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~   83 (234)
T pfam05496        53 VLLYGPPGLGKTTLANIIANEMGVNIRITSG   83 (234)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf             7887899998889999999840875376142