HHsearch alignment for GI: peg_887 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.82 E-value=0.03 Score=34.78 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCE--EEEC
Q ss_conf 9998798733449999999881987--9750
Q 537021.9.peg.8 13 IFISGPTASGKSLCAVNLAHKFNGA--IINA 41 (133)
Q Consensus 13 i~I~GpTasGKT~lai~LA~~~~~~--IIs~ 41 (133)
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~ 83 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSG 83 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 7887899998889999999840875376142