HHsearch alignment for GI: peg_887 and conserved domain: pfam06309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=95.35 E-value=0.051 Score=33.36 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHH
Q ss_conf 58984999987987334499999998819879750044211682224234676874234043314451376558999999
Q 537021.9.peg.8 7 STHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLR 86 (133)
Q Consensus 7 ~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~ 86 (133)
T Consensus 50 p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~----------------------G~~S~~Vh~fi~~~hFPh~~~v~~YK~ 107 (127)
T pfam06309 50 PRKPLVLSFHGWTGTGKNFVAEIIADNLYRD----------------------GLRSPYVHHFVATNHFPHPKYVELYKV 107 (127)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC----------------------CCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 9997488701899987989999999998754----------------------347875688424224897688999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999984
Q 537021.9.peg.8 87 YAIKKIAEVQK 97 (133)
Q Consensus 87 ~a~~~i~~i~~ 97 (133)
T Consensus 108 ~L~~~I~~~v~ 118 (127)
T pfam06309 108 ELKNQIRGTLR 118 (127)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996