HHsearch alignment for GI: peg_888 and conserved domain: COG0324
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=427.57 Aligned_cols=212 Identities=40% Similarity=0.671 Sum_probs=199.1
Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH
Q ss_conf 46899-99963994089789327999996172448899989999999999962235556655311623202357015699
Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQR 80 (217)
Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~R 80 (217)
T Consensus 81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~R 160 (308)
T COG0324 81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQR 160 (308)
T ss_pred HHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHCCCCCHHH
T ss_conf 99999999968998799766799999997387678999989999999999861879999999864999998658886247
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999998534887467754154567770010000107867899999997776542113456777751138631013442
Q 537021.9.peg.8 81 IARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMK 160 (217)
Q Consensus 81 i~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~ 160 (217)
T Consensus 161 i~RALEv~~~tGk~~s~~~~~~-~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~~~~~~~~ 239 (308)
T COG0324 161 IIRALEVYYLTGKPISELQKRS-RPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLHLDLPAMQ 239 (308)
T ss_pred HHHHHHHHHHHCCCHHHHHHCC-CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 8999999999897978873113-677777663899985888889999999999999864999999998556786543777
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 068567789867899989999999999998888876886288875311698301
Q 537021.9.peg.8 161 AIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSID 214 (217)
Q Consensus 161 ~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~d 214 (217)
T Consensus 240 ~iGy~e~~~yl~g~~~~~ea~~~~~~~TRqyAKRQ~TWfr~~~~~~w~~~~~~~ 293 (308)
T COG0324 240 AIGYKEILAYLDGGISLEEAIERIKTATRQYAKRQLTWFRNQLGVHWLDSESPD 293 (308)
T ss_pred HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
T ss_conf 647989999982877799999999999999999999997036645210168863