HHsearch alignment for GI: peg_888 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=100.00 E-value=0 Score=445.49 Aligned_cols=210 Identities=33% Similarity=0.547 Sum_probs=196.8
Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHH
Q ss_conf 46899-99963994089789327999996172448899-98999999999996223555665531162320235701569
Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEI-PTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQ 79 (217)
Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~-~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~ 79 (217)
T Consensus 77 ~~~~~~~i~~~Gkipl~VGGT~lY~k~l~~gl~~~~~~~~~~~r~~~~~~~~~~g~~~ly~~L~~~DP~~a~~ihPND~~ 156 (307)
T TIGR00174 77 ALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSAEDKLIRESLEILAERQGKSFLYKELKKVDPVAAAKIHPNDTR 156 (307)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCHH
T ss_conf 99999999856983488685788999997147777555650579999999985491578887775076989721776147
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----
Q ss_conf 999999998534887467754154567770010000107-86789999999777654211345677775113863-----
Q 537021.9.peg.8 80 RIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIIL-PERSALKERIRRRFTQMLESGAIDEIRSLMKMNLS----- 153 (217)
Q Consensus 80 Ri~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~-~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~----- 153 (217)
T Consensus 157 R~~RaLEvfY~TG~~~Se~~~~~~~~--L~~~~v~~~l~~~~~e~L~~RI~~R~~~Ml~sGl~~Evk~Ly~~~~~~kftP 234 (307)
T TIGR00174 157 RVKRALEVFYATGKPISELFKEQKKE--LFYNIVQIGLAPLEREALHERIEQRVHEMLESGLLAEVKGLYAKYDKNKFTP 234 (307)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCCC--CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89899998875078656664036665--4146677763005864567789999999998638999999985175556575
Q ss_pred --CHHHHHHCCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCCH
Q ss_conf --10134420685677898678-----9998999999999999888887688628887------531169830
Q 537021.9.peg.8 154 --LDLPIMKAIGVRDIIALLKG-----EINYDETLQRGIIATNKYAKRQKTWLCHQFQ------ADWIRISSI 213 (217)
Q Consensus 154 --~~~~~~~~IGYke~~~yL~g-----~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~------~~w~~~~~~ 213 (217)
T Consensus 235 eq~d~p~~~~iGy~E~~~yl~g~tddn~~~L~~~~e~~~~~tr~yAKRQ~Tw~r~~~~PdikGd~~wld~~~~ 307 (307)
T TIGR00174 235 EQEDLPSIKAIGYKEFLLYLEGKTDDNRVTLEDAIERIKKNTRQYAKRQLTWFRKKSAPDIKGDVLWLDSEDP 307 (307)
T ss_pred CHHCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC
T ss_conf 0004763000128888887368876421149999999988799988888888602237873430343388899