HHsearch alignment of GI: peg_888 and MMDB domain: 3foz_A_206-289

>3foz_A (A:206-289) TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.93  E-value=1.4e-25  Score=188.22  Aligned_cols=83  Identities=46%  Similarity=0.742  Sum_probs=79.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6789999999777654211345677775113-863101344206856778986789998999999999999888887688
Q 537021.9.peg.8  120 ERSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTW  198 (217)
Q Consensus       120 ~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~-~~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TW  198 (217)
                      ||+.|++||+.||+.|+++||++||+.|++. +.+.+.++++||||+|+.+||+|++++++|++.++++||||||||+||
T Consensus         1 dr~~L~~ri~~Rv~~M~~~Gl~~Ev~~l~~~~~~~~~~~~~~aIGykE~~~~l~~~~~~~e~i~~~~~~Tr~yAKRQ~tW   80 (84)
T 3foz_A            1 SRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITW   80 (84)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCCTTSTTTTSTTHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999755789999999843554332565503699999998499999999999999999999999998


Q ss_pred             HCCC
Q ss_conf             6288
Q 537021.9.peg.8  199 LCHQ  202 (217)
Q Consensus       199 fr~~  202 (217)
                      ||+.
T Consensus        81 fr~~   84 (84)
T 3foz_A           81 LRGW   84 (84)
T ss_dssp             HHSC
T ss_pred             HCCC
T ss_conf             3899