Query 537021.9.peg.888_1 Match_columns 217 No_of_seqs 126 out of 2919 Neff 6.8 Searched_HMMs 23785 Date Wed May 25 04:07:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_888.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3foz_A TRNA delta(2)-isopenten 100.0 0 0 447.2 20.5 214 2-216 88-303 (316) 2 3exa_A TRNA delta(2)-isopenten 100.0 0 0 440.3 20.4 211 2-214 81-293 (322) 3 3crm_A TRNA delta(2)-isopenten 100.0 0 0 447.4 14.2 214 2-215 83-308 (323) 4 3d3q_A TRNA delta(2)-isopenten 100.0 0 0 431.6 18.5 209 2-213 85-298 (340) 5 3eph_A TRNA isopentenyltransfe 100.0 0 0 403.2 13.3 211 2-214 80-309 (409) 6 3a8t_A Adenylate isopentenyltr 100.0 2.8E-42 0 296.5 7.9 156 2-212 119-303 (339) 7 2ze6_A Isopentenyl transferase 99.4 1.2E-13 5.2E-18 109.0 2.9 143 5-152 83-242 (253) 8 2a0m_A Arginase superfamily pr 49.7 6.5 0.00028 19.2 1.9 25 5-29 105-129 (316) 9 3lu1_A WBGU; rossman fold, epi 47.3 12 0.0005 17.5 2.9 27 4-30 30-56 (364) 10 1sxj_A Activator 1 95 kDa subu 44.6 11 0.00045 17.8 2.3 83 4-94 170-261 (516) 11 2p4h_X Vestitone reductase; NA 44.2 6.1 0.00026 19.4 1.0 18 11-29 1-18 (322) 12 3kb2_A SPBC2 prophage-derived 43.7 14 0.00059 17.0 2.8 67 112-186 96-162 (173) 13 3lhl_A Putative agmatinase; pr 42.7 12 0.00051 17.4 2.4 27 5-31 81-107 (287) 14 1dih_A Dihydrodipicolinate red 42.3 13 0.00055 17.2 2.5 24 3-26 86-109 (273) 15 2cev_A Protein (arginase); enz 42.0 10 0.00043 17.9 1.9 27 6-32 83-109 (299) 16 3bqs_A Uncharacterized protein 40.5 19 0.0008 16.1 4.3 53 30-86 4-63 (93) 17 3ijp_A DHPR, dihydrodipicolina 40.4 11 0.00045 17.8 1.8 24 4-27 103-126 (288) 18 2aeb_A Arginase 1; hydrolase, 39.9 12 0.00049 17.5 1.9 26 7-32 86-111 (322) 19 1p9l_A Dihydrodipicolinate red 37.6 18 0.00076 16.3 2.6 24 2-25 58-81 (245) 20 1pq3_A Arginase II, mitochondr 37.1 14 0.00057 17.1 1.9 26 7-32 82-107 (306) 21 3llm_A ATP-dependent RNA helic 36.8 18 0.00076 16.3 2.5 25 114-138 111-135 (235) 22 1gq6_A Proclavaminate amidino 36.6 12 0.00051 17.4 1.6 26 5-30 104-129 (313) 23 1db3_A GDP-mannose 4,6-dehydra 36.4 11 0.00048 17.6 1.4 18 12-29 1-18 (372) 24 1vm6_A DHPR, dihydrodipicolina 36.1 14 0.00057 17.1 1.8 26 3-28 67-92 (228) 25 3mmr_A Arginase; malaria, ABH, 34.6 14 0.00057 17.1 1.6 25 7-31 180-204 (413) 26 1woh_A Agmatinase; alpha/beta 34.4 21 0.0009 15.8 2.6 29 6-34 105-133 (305) 27 1lvg_A Guanylate kinase, GMP k 34.4 16 0.00069 16.6 1.9 75 111-194 117-191 (198) 28 1n7h_A GDP-D-mannose-4,6-dehyd 34.0 14 0.00059 17.0 1.6 35 173-207 336-370 (381) 29 1t2a_A GDP-mannose 4,6 dehydra 34.0 13 0.00055 17.2 1.4 21 9-29 19-41 (375) 30 1knq_A Gluconate kinase; ALFA/ 33.8 24 0.001 15.4 4.1 67 111-188 104-171 (175) 31 2ef5_A Arginase; TTHA1496, str 33.6 10 0.00044 17.8 0.8 26 6-31 80-105 (290) 32 2pt5_A Shikimate kinase, SK; a 33.1 6.2 0.00026 19.3 -0.4 67 112-187 94-160 (168) 33 1u83_A Phosphosulfolactate syn 32.7 25 0.0011 15.3 3.0 77 2-98 82-158 (276) 34 2bka_A CC3, TAT-interacting pr 32.7 25 0.0011 15.3 3.0 27 4-30 9-36 (242) 35 1y1p_A ARII, aldehyde reductas 30.8 17 0.00073 16.4 1.6 20 10-29 9-28 (342) 36 1xrs_B D-lysine 5,6-aminomutas 29.1 22 0.00094 15.7 1.9 21 114-134 162-183 (262) 37 2z1m_A GDP-D-mannose dehydrata 29.0 19 0.00081 16.1 1.6 18 11-28 2-19 (345) 38 3i6i_A Putative leucoanthocyan 28.8 18 0.00077 16.2 1.4 20 10-30 9-28 (346) 39 1e6u_A GDP-fucose synthetase; 27.9 11 0.00048 17.6 0.3 18 11-29 3-20 (321) 40 1pgy_A SWA2P; UBA, ubiquitin, 27.4 22 0.00092 15.7 1.6 40 140-186 2-43 (47) 41 2x6t_A AGME,, ADP-L-glycero-D- 26.9 20 0.00086 15.9 1.4 18 11-28 45-62 (357) 42 2waq_Q DNA-directed RNA polyme 26.6 17 0.00072 16.4 1.0 26 170-195 54-79 (104) 43 1rkx_A CDP-glucose-4,6-dehydra 26.5 26 0.0011 15.2 1.9 21 9-29 6-26 (357) 44 2gn4_A FLAA1 protein, UDP-GLCN 26.1 24 0.00099 15.5 1.6 20 11-30 20-39 (344) 45 2rh8_A Anthocyanidin reductase 25.4 24 0.001 15.4 1.6 20 11-30 8-27 (338) 46 1qyd_A Pinoresinol-lariciresin 25.4 20 0.00083 16.0 1.1 18 11-29 4-21 (313) 47 1qyc_A Phenylcoumaran benzylic 25.4 20 0.00083 16.0 1.1 19 11-30 4-22 (308) 48 2c29_D Dihydroflavonol 4-reduc 25.0 18 0.00074 16.4 0.8 20 10-29 3-22 (337) 49 2qt1_A Nicotinamide riboside k 24.0 32 0.0013 14.6 1.9 71 113-187 132-202 (207) 50 2i2x_B MTAC, methyltransferase 22.6 38 0.0016 14.2 2.3 14 115-128 157-170 (258) 51 2r6j_A Eugenol synthase 1; phe 22.5 26 0.0011 15.2 1.3 19 11-30 11-29 (318) 52 2yy7_A L-threonine dehydrogena 22.4 29 0.0012 14.9 1.5 17 12-29 3-19 (312) 53 1sb8_A WBPP; epimerase, 4-epim 22.4 28 0.0012 15.0 1.4 19 11-29 26-44 (352) 54 2gas_A Isoflavone reductase; N 22.2 27 0.0011 15.1 1.3 19 11-30 2-20 (307) 55 3hkz_Y DNA-directed RNA polyme 22.1 17 0.00073 16.4 0.3 27 169-195 53-79 (104) 56 1qwg_A PSL synthase;, (2R)-pho 21.5 40 0.0017 14.0 6.1 29 2-31 57-85 (251) 57 2jb0_B Colicin E7; hydrolase/i 20.4 42 0.0018 13.9 2.0 47 37-85 30-80 (131) 58 1z45_A GAL10 bifunctional prot 20.1 36 0.0015 14.3 1.6 24 6-29 5-28 (699) No 1 >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Probab=100.00 E-value=0 Score=447.18 Aligned_cols=214 Identities=35% Similarity=0.597 Sum_probs=197.4 Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH Q ss_conf 46899-99963994089789327999996172448899989999999999962235556655311623202357015699 Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQR 80 (217) Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~R 80 (217) +.+.+ +++++|++||||||||||++||++|+++.|++|+.+|.++++.....|.+.+|++|+++||++|++||+||++| T Consensus 88 a~~~i~~i~~~~k~pIlVGGTglYl~all~g~~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~iDp~~a~~i~~nd~~R 167 (316) T 3foz_A 88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQR 167 (316) T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHH T ss_pred HHHHHHHHHHCCCCCEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHCCCCCHHH T ss_conf 99899999965997089735178999998298779999979988765431016999999999973999996159666889 Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHH Q ss_conf 99999998534887467754154567770010000107867899999997776542113456777751138-63101344 Q 537021.9.peg.8 81 IARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMN-LSLDLPIM 159 (217) Q Consensus 81 i~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~-~~~~~~~~ 159 (217) |+|||||+..||+++|+|+...+.+ .++..+.++++.+||+.||+||+.||+.|+++||++||+.|++++ ++.+++++ T Consensus 168 i~RAlEv~~~tGk~~s~~~~~~~~~-~~~~~~~i~~~~~~re~L~~rI~~Rv~~Ml~~GlieEv~~L~~~~~~~~~~~~~ 246 (316) T 3foz_A 168 LSRALEVFFISGKTLTELTQTSGDA-LPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSI 246 (316) T ss_dssp HHHHHHHHHHHSSCHHHHHTSCCCC-CSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCCTTSTTT T ss_pred HHHHHHHHHHHCCCHHHHHHCCCCC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH T ss_conf 9999999996179878886313788-887633899618999999999999999998740899999999843677431555 Q ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCC Q ss_conf 206856778986789998999999999999888887688628887531169830104 Q 537021.9.peg.8 160 KAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSIDDL 216 (217) Q Consensus 160 ~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~d~i 216 (217) +||||||+.+||+|+++++++++.++++||||||||+||||++++++|++.++++++ T Consensus 247 ~aIGYkE~~~yL~g~~s~~eaie~i~~~TrqyAKRQ~TWfR~~~~i~wid~~~~~~~ 303 (316) T 3foz_A 247 RCVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQA 303 (316) T ss_dssp TSTTHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCEEEETTCHHHH T ss_pred HEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH T ss_conf 413699999998599999999999999999999998898389998758789886899 No 2 >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Probab=100.00 E-value=0 Score=440.34 Aligned_cols=211 Identities=30% Similarity=0.515 Sum_probs=194.2 Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHH Q ss_conf 46899-99963994089789327999996172448-89998999999999996223555665531162320235701569 Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIM-PEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQ 79 (217) Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~-p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~ 79 (217) +.+.| ++++||++||||||||||++||++|+++. |+.++.++.+++...+..|.+.+|++|+++||++|++||+||++ T Consensus 81 a~~~i~~i~~r~k~PIlVGGTglYl~aLl~g~~~~~~~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~ 160 (322) T 3exa_A 81 ATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYR 160 (322) T ss_dssp HHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHH T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHCCCCCHH T ss_conf 99999999976998099948388999998185455445998999999999997283999999987594988633866207 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 99999999853488746775415456777001000010786789999999777654211345677775113863101344 Q 537021.9.peg.8 80 RIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIM 159 (217) Q Consensus 80 Ri~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~ 159 (217) ||+|||||+..||+++|+++.+.+.. ...+++++|+|.+||+.||+||++||+.||++||++||+.|+++++ .+.+++ T Consensus 161 Ri~RAlEv~~~tg~~~s~~~~~~~~~-~~~~~~~~i~L~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~L~~~~~-~~~~~~ 238 (322) T 3exa_A 161 RVIRALEIIKLTGKTVTEQARHEEET-PSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRGI-RDCQSV 238 (322) T ss_dssp HHHHHHHHHHHTC---------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTC-CSSTGG T ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC-CCCCHH T ss_conf 89999999997068888986325578-8876438999716558789999999999997786899999986255-545400 Q ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 2068567789867899989999999999998888876886288875311698301 Q 537021.9.peg.8 160 KAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSID 214 (217) Q Consensus 160 ~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~d 214 (217) +||||||+.+||+|++++++|++.++++||||||||+||||++++++|++.++.+ T Consensus 239 ~aIGYkE~~~yL~g~~s~ee~ie~i~~~Tr~yAKRQ~TWfR~~~~i~w~d~~~~~ 293 (322) T 3exa_A 239 QAIGYKEMYDYLDGNVTLEEAIDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDVD 293 (322) T ss_dssp GSTTTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEECTTCC T ss_pred CEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC T ss_conf 0022999999986999999999999999999999999981899998265698738 No 3 >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Probab=100.00 E-value=0 Score=447.36 Aligned_cols=214 Identities=34% Similarity=0.553 Sum_probs=195.5 Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH Q ss_conf 46899-99963994089789327999996172448899989999999999962235556655311623202357015699 Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQR 80 (217) Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~R 80 (217) +.+.+ +++++|++||||||||||++||++|+++.|++++++|++++......|.+.+|++|+++||++|++||+||++| T Consensus 83 a~~~i~~i~~~gk~PIiVGGTglYl~aLl~g~~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~iDp~~a~~i~~nd~~R 162 (323) T 3crm_A 83 ALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQR 162 (323) T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC------------------------------------------------ T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHCCCCCHHH T ss_conf 99999999835994089756139999998399778852166899999986523799999999875909885079665779 Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCC---------CCHHHEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999985348874677541545677---------700100001078-6789999999777654211345677775113 Q 537021.9.peg.8 81 IARALEIKLVSGQSIIEFWKQAPNPFI---------PLESAHKIIILP-ERSALKERIRRRFTQMLESGAIDEIRSLMKM 150 (217) Q Consensus 81 i~RaLEi~~~tGk~~s~~~~~~~~~~~---------~~~~~~~i~l~~-~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~ 150 (217) |+|||||+..||+++|+|+.+++.+.. ..+++++|++.+ ||+.||+||+.||+.||++||++||+.|+++ T Consensus 163 i~RAlEv~~~tGk~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~R~~L~~rI~~Rvd~Ml~~GlieEv~~l~~~ 242 (323) T 3crm_A 163 LMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHAR 242 (323) T ss_dssp -------------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHTC T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC T ss_conf 99999999985987799886434554554433345788755899983778999999999999999985769999999862 Q ss_pred C-CCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHC Q ss_conf 8-6310134420685677898678999899999999999988888768862888753116983010 Q 537021.9.peg.8 151 N-LSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSIDD 215 (217) Q Consensus 151 ~-~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~d~ 215 (217) + ++.++++++||||||+.+||+|++++++|++.++++||||||||+||||++.+++|++.++.|+ T Consensus 243 ~~~~~~~~~~~aIGYkE~~~yL~g~~s~~e~~e~i~~~TrqyAKRQ~TWfR~~~~i~w~d~~~~~~ 308 (323) T 3crm_A 243 SDLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDN 308 (323) T ss_dssp TTCCTTSSGGGSTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCEEEETTCSCH T ss_pred CCCCCCCCHHHEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHH T ss_conf 368878835533349999999859999999999999999999989999848999881347988157 No 4 >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Probab=100.00 E-value=0 Score=431.62 Aligned_cols=209 Identities=27% Similarity=0.418 Sum_probs=186.2 Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHCCCCCH Q ss_conf 46899-9996399408978932799999617244889998999999999----996223555665531162320235701 Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREK----LKQYGSHILHDELSSLDSIVARQIHPS 76 (217) Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~----~~~~g~~~l~~~L~~~DP~~a~~i~~n 76 (217) +.+.| +++++|++||||||||||++||++|+++.|..++..+...... .+..|++.||++|+++||++|++||+| T Consensus 85 a~~~i~~i~~~~kiPIlVGGTglYi~all~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~~n 164 (340) T 3d3q_A 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPN 164 (340) T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTT T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999975997199817088999998487755678857788999998888987369999999983259999736966 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 56999999999853488746775415456777001000010786789999999777654211345677775113863101 Q 537021.9.peg.8 77 DGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDL 156 (217) Q Consensus 77 d~~Ri~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~ 156 (217) |++||+|||||+..||+++|++...... ...+++++|+|.+||+.||+||+.||+.|+++||++||+.|+++|+ .+. T Consensus 165 d~rRi~RalEi~~~tgk~~s~~~~~~~~--~~~~~~~~i~L~~~r~~L~~rI~~Rvd~Ml~~GlleEv~~L~~~~~-~~~ 241 (340) T 3d3q_A 165 NRKRVLRAIEYYLKTKKLLSSRKKVQQF--TENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGF-EAS 241 (340) T ss_dssp CHHHHHHHHHHHHHHCSCSHHHHHHHHH--SBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTC-TTS T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCC--CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC-CCC T ss_conf 6306789999999828842444213677--7886644011476799999999999999998788999999997489-966 Q ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 344206856778986789998999999999999888887688628887531169830 Q 537021.9.peg.8 157 PIMKAIGVRDIIALLKGEINYDETLQRGIIATNKYAKRQKTWLCHQFQADWIRISSI 213 (217) Q Consensus 157 ~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~ 213 (217) ++++||||||+.+||+|++++++|++.++++||||||||+||||++++++|+++++. T Consensus 242 ~~~kaIGYkE~~~yL~g~islee~ie~i~~~TrqyAKRQ~TWfR~~~~i~w~d~~~~ 298 (340) T 3d3q_A 242 QSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERM 298 (340) T ss_dssp SGGGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEETTTC T ss_pred CCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC T ss_conf 000346099999998699999999999999999999999998089999916688856 No 5 >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Probab=100.00 E-value=0 Score=403.21 Aligned_cols=211 Identities=22% Similarity=0.372 Sum_probs=189.6 Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH Q ss_conf 46899-99963994089789327999996172448899989999999999962235556655311623202357015699 Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQR 80 (217) Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~R 80 (217) +.+.| ++++||++||||||||||++||++|+++.|..++.++.+....++..|.+.+|++|+++||++|+++||||++| T Consensus 80 a~~~i~~i~~rgk~PIiVGGT~~Yi~aLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~vDP~~A~kihpnd~rR 159 (409) T 3eph_A 80 CMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRR 159 (409) T ss_dssp HHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHH T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCCCHHHH T ss_conf 99999999862896599888217999997430457410288999999998740499999998602788776349737789 Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------- Q ss_conf 9999999853488746775415456777001000010786789999999777654211345677775113863------- Q 537021.9.peg.8 81 IARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLS------- 153 (217) Q Consensus 81 i~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~------- 153 (217) |+||||||+.||+++|+++..++.. ..+++++|++.++++.|++||+.||+.|+++||++||+.|++.+.. T Consensus 160 I~RaLei~~~tG~~~S~~~~~~~~~--~~~~~~~~~l~~~~~~L~~rI~~Rvd~Ml~~Gll~Ev~~l~~~~~~~~~~~~~ 237 (409) T 3eph_A 160 VQRMLEIYYKTGKKPSETFNEQKIT--LKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQ 237 (409) T ss_dssp HHHHHHHHHHHCSCHHHHHHTCCCC--CSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGG T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCC--CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC T ss_conf 9999999981268889996420456--54112110247977889989999999999867699999999733645567210 Q ss_pred CHHHHHHCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCCCHH Q ss_conf 101344206856778986789-----99899999999999988888768862888------75311698301 Q 537021.9.peg.8 154 LDLPIMKAIGVRDIIALLKGE-----INYDETLQRGIIATNKYAKRQKTWLCHQF------QADWIRISSID 214 (217) Q Consensus 154 ~~~~~~~~IGYke~~~yL~g~-----~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~------~~~w~~~~~~d 214 (217) .+.++++||||||+.+||+|+ +++++|++.++.+||||||||+||||+++ +++|+|.++.+ T Consensus 238 ~~~gi~qaIGykE~~~yL~g~~~~~~~~lee~ie~ik~~TrqYAKrQ~tW~r~~~~~~~~~~~~~lD~td~~ 309 (409) T 3eph_A 238 CENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLS 309 (409) T ss_dssp TTSGGGGSTTTGGGGGGGC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCTT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHH T ss_conf 134788884399999997487765635899999999999999999999997036652258874220651477 No 6 >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Probab=100.00 E-value=2.8e-42 Score=296.51 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=125.3 Q ss_pred HHHHH-HHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH Q ss_conf 46899-99963994089789327999996172448899989999999999962235556655311623202357015699 Q 537021.9.peg.8 2 LSKKL-QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQR 80 (217) Q Consensus 2 ~~k~~-e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~R 80 (217) +.+.| ++++||++||||||||||++||++|. +|+.+|+++++.. .+..+ T Consensus 119 A~~~I~~i~~rgkiPIlVGGTglYl~ALL~g~--l~~~dP~i~~e~~---------------------------~~~~~- 168 (339) T 3a8t_A 119 AGKAVSEITGRRKLPVLVGGSNSFIHALLVDR--FDSSGPGVFEEGS---------------------------HSVVS- 168 (339) T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS--CCTTCC---------------------------------------- T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCC--CCCCCHHHHHHHC---------------------------HHHHH- T ss_conf 99999999848996499757207889886387--7788989999855---------------------------14344- Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CC Q ss_conf 99999998534887467754154567770010000107867899999997776542113456777751138-------63 Q 537021.9.peg.8 81 IARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMN-------LS 153 (217) Q Consensus 81 i~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~-------~~ 153 (217) . ...+++++|+|++||+.|++||++||+.|+++||++||+.|++.+ .. T Consensus 169 ---------------------~----~lr~~~~~i~L~~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~ 223 (339) T 3a8t_A 169 ---------------------S----ELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSA 223 (339) T ss_dssp --------------------------CBSSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHCCTTCSCTTSCGG T ss_pred ---------------------H----HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC T ss_conf ---------------------4----421563589951999999999999999999772999999998620201234555 Q ss_pred CHHHHHHCCCHHHHHHHHCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCC Q ss_conf 10134420685677898678-----------------9998999999999999888887688628887531----16983 Q 537021.9.peg.8 154 LDLPIMKAIGVRDIIALLKG-----------------EINYDETLQRGIIATNKYAKRQKTWLCHQFQADW----IRISS 212 (217) Q Consensus 154 ~~~~~~~~IGYke~~~yL~g-----------------~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w----~~~~~ 212 (217) .+.++++||||||+.+||+| +.+++++++.++++||||||||+||||+...+.| +|.++ T Consensus 224 ~~~~~~qaIGYkE~~~yL~g~~~~~~~~~~~~~~~~~~~sleeaie~ik~~TrqYAKRQ~TWfRr~~~~~W~~~~~Da~~ 303 (339) T 3a8t_A 224 TRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDATE 303 (339) T ss_dssp GSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECHH T ss_pred CCCCCHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC T ss_conf 45672012378999999836453211111001234567669999999999999999999999676876898655651652 No 7 >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Probab=99.37 E-value=1.2e-13 Score=108.98 Aligned_cols=143 Identities=14% Similarity=0.072 Sum_probs=91.3 Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHH-----------HH----HHHHHH-HHHHHHHHHHHHHCCHH Q ss_conf 999996399408978932799999617244889998999-----------99----999999-62235556655311623 Q 537021.9.peg.8 5 KLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIR-----------EK----IREKLK-QYGSHILHDELSSLDSI 68 (217) Q Consensus 5 ~~e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir-----------~~----~~~~~~-~~g~~~l~~~L~~~DP~ 68 (217) ..+++++|++||+|||||||++||++|....|.++..++ .+ +...+. ..+...+..++..+++. T Consensus 83 i~~~~~~~~~pIlvGGTglY~~al~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~l~~~~~~~~~~~el~~~~~~ 162 (253) T 2ze6_A 83 EVDWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAELWNY 162 (253) T ss_dssp HHHTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHTS T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC T ss_conf 99999669988998885999999984996676667888760247667789999999998645450067899999997178 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH Q ss_conf 202357015699999999985348874677541545677700100001078678999999977-7654211345677775 Q 537021.9.peg.8 69 VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRR-FTQMLESGAIDEIRSL 147 (217) Q Consensus 69 ~a~~i~~nd~~Ri~RaLEi~~~tGk~~s~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~R-~~~Ml~~GlieEv~~L 147 (217) .......++..+..++++.+..++.++..+..... .... ..+--..++...+.++..| ++.|+++|.++||-.. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~li~~i~~~~~~~~~~qer~f~~m~e~Ga~~~V~~~ 237 (253) T 2ze6_A 163 PAARPILEDIDGYRCAIRFARKHDLAISQLPNIDA----GRHV-ELIEAIANEYLEHALSQERDFPQWPEDGAGQPVCPV 237 (253) T ss_dssp TTHHHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCT----THHH-HHHHHHHHHHHHHHHHHHHHSCCCCC---------- T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 14212400121179999999980898788986266----7899-999999999999999987512678766770402699 Q ss_pred HHCCC Q ss_conf 11386 Q 537021.9.peg.8 148 MKMNL 152 (217) Q Consensus 148 ~~~~~ 152 (217) ....+ T Consensus 238 ~~~~~ 242 (253) T 2ze6_A 238 TLTRI 242 (253) T ss_dssp ----- T ss_pred HHHHH T ss_conf 99998 No 8 >2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1 Probab=49.69 E-value=6.5 Score=19.15 Aligned_cols=25 Identities=12% Similarity=0.184 Sum_probs=17.3 Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 9999963994089789327999996 Q 537021.9.peg.8 5 KLQRYKKRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 5 ~~e~~~r~kiPIiVGGTglY~~all 29 (217) ..+++++|++||++||.+-=.-+++ T Consensus 105 v~~i~~~g~~Pi~lGGdHsis~~~~ 129 (316) T 2a0m_A 105 VFTVLARGAFPFVIGGGNDQSAPNG 129 (316) T ss_dssp HHHHHHTTCEEEEEESCGGGHHHHH T ss_pred HHHHHHCCCEEEEECCCCHHHHHHH T ss_conf 9999978996899568836758988 No 9 >3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides} Probab=47.29 E-value=12 Score=17.45 Aligned_cols=27 Identities=19% Similarity=-0.031 Sum_probs=19.6 Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHC Q ss_conf 899999639940897893279999961 Q 537021.9.peg.8 4 KKLQRYKKRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 4 k~~e~~~r~kiPIiVGGTglY~~all~ 30 (217) ...++.-++|.-+|+|||||==.+|+. T Consensus 30 ~~~~~~~~~K~ILVTGgtGfIGs~lv~ 56 (364) T 3lu1_A 30 ITQQLIFSPKTWLITGVAGFIGSNLLE 56 (364) T ss_dssp HHHHHHHSCCEEEEETTTSHHHHHHHH T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHH T ss_conf 999735589989996887589999999 No 10 >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Probab=44.61 E-value=11 Score=17.78 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=36.3 Q ss_pred HHHHHHHCCCCEEEECCCCHHHHH---H---HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC---CC Q ss_conf 899999639940897893279999---9---61724488999899999999999622355566553116232023---57 Q 537021.9.peg.8 4 KKLQRYKKRFLPIIVGGTGLYFRA---L---TGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQ---IH 74 (217) Q Consensus 4 k~~e~~~r~kiPIiVGGTglY~~a---l---l~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~---i~ 74 (217) ..++.....+.||++=.+-.+... + ..-+.+.|....++...+.......+. ++|++.... .. T Consensus 170 ~l~~~~~~~~~piI~i~n~~~~~~i~~l~~r~~~I~F~~p~~~~i~~~l~~I~~~E~i--------~i~~~~l~~I~~~s 241 (516) T 1sxj_A 170 QLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF--------KLDPNVIDRLIQTT 241 (516) T ss_dssp HHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC--------CCCTTHHHHHHHHT T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHC T ss_conf 9998630234316888448744342443451489844799999999999999997499--------99755899999983 Q ss_pred CHHHHHHHHHHHHHHHCCCC Q ss_conf 01569999999998534887 Q 537021.9.peg.8 75 PSDGQRIARALEIKLVSGQS 94 (217) Q Consensus 75 ~nd~~Ri~RaLEi~~~tGk~ 94 (217) .+|.|+++..|+.+..+++. T Consensus 242 ~GDIR~aIn~Lq~~~~~~k~ 261 (516) T 1sxj_A 242 RGDIRQVINLLSTISTTTKT 261 (516) T ss_dssp TTCHHHHHHHHTHHHHHSSC T ss_pred CCCHHHHHHHHHHHHHCCCC T ss_conf 99899999999999965998 No 11 >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Probab=44.19 E-value=6.1 Score=19.37 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.0 Q ss_pred CCCCEEEECCCCHHHHHHH Q ss_conf 3994089789327999996 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 11 r~kiPIiVGGTglY~~all 29 (217) |||| +|+|||||==.+|+ T Consensus 1 k~rI-LVTG~tGfIG~~l~ 18 (322) T 2p4h_X 1 KGRV-CVTGGTGFLGSWII 18 (322) T ss_dssp CCEE-EEESTTSHHHHHHH T ss_pred CCEE-EEECCCCHHHHHHH T ss_conf 9969-99899878999999 No 12 >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Probab=43.70 E-value=14 Score=16.97 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=42.6 Q ss_pred HEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 000010786789999999777654211345677775113863101344206856778986789998999999999 Q 537021.9.peg.8 112 AHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGII 186 (217) Q Consensus 112 ~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~ 186 (217) .++|+|.++.+.+.+||..|-....+..-++++...+...+. +.+ ...+ ..=.+..|.+|..+.|.. T Consensus 96 dl~IyL~~~~e~~~~Ri~~R~~~~~~~~~~~~i~~~~~e~~~-~~~-~~~~------~idt~~~s~eev~~~Ii~ 162 (173) T 3kb2_A 96 AKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMS-NAG-LHTY------SWDTGQWSSDEIAKDIIF 162 (173) T ss_dssp EEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHH-TCS-SCEE------EEETTTSCHHHHHHHHHH T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCC-CCEE------EEECCCCCHHHHHHHHHH T ss_conf 789995599999999998537642024657799999999860-366-6559------988999999999999999 No 13 >3lhl_A Putative agmatinase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.30A {Clostridium difficile} Probab=42.71 E-value=12 Score=17.39 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=18.8 Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHCC Q ss_conf 999996399408978932799999617 Q 537021.9.peg.8 5 KLQRYKKRFLPIIVGGTGLYFRALTGQ 31 (217) Q Consensus 5 ~~e~~~r~kiPIiVGGTglY~~all~g 31 (217) ..+++++|++||++||-+----+.+.+ T Consensus 81 v~~~l~~~~~pi~lGGdHsit~~~~~a 107 (287) T 3lhl_A 81 TYKIVRDSKVPFMIGGEHLVTLPAFKA 107 (287) T ss_dssp HHHHHHTTCEEEEEESSGGGHHHHHHH T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHH T ss_conf 999995798169978766452167899 No 14 >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Probab=42.27 E-value=13 Score=17.19 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=16.9 Q ss_pred HHHHHHHHCCCCEEEECCCCHHHH Q ss_conf 689999963994089789327999 Q 537021.9.peg.8 3 SKKLQRYKKRFLPIIVGGTGLYFR 26 (217) Q Consensus 3 ~k~~e~~~r~kiPIiVGGTglY~~ 26 (217) .+.++...+.++|+|+|=||+=-+ T Consensus 86 ~~~~~~~~~~~~p~ViGTTG~~~~ 109 (273) T 1dih_A 86 LNHLAFCRQHGKGMVIGTTGFDEA 109 (273) T ss_dssp HHHHHHHHHTTCEEEECCCCCCHH T ss_pred HHHHHHHHHCCCCEEEECCCCCCH T ss_conf 999999996287679954798601 No 15 >2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A* Probab=41.99 E-value=10 Score=17.86 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.8 Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHCCC Q ss_conf 999963994089789327999996172 Q 537021.9.peg.8 6 LQRYKKRFLPIIVGGTGLYFRALTGQL 32 (217) Q Consensus 6 ~e~~~r~kiPIiVGGTglY~~all~g~ 32 (217) .+++++|++||++||-+----+.+.++ T Consensus 83 ~~~~~~g~~pi~lGGdHsit~~~~~a~ 109 (299) T 2cev_A 83 DQVVQRGRFPLVLGGDHSIAIGTLAGV 109 (299) T ss_dssp HHHHHTTCEEEEEESSGGGHHHHHHHH T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHH T ss_conf 999966985898368765225567899 No 16 >3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A Probab=40.54 E-value=19 Score=16.14 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=37.3 Q ss_pred CCCCCCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHH Q ss_conf 172448899989999999-------999962235556655311623202357015699999999 Q 537021.9.peg.8 30 GQLSIMPEIPTAIREKIR-------EKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALE 86 (217) Q Consensus 30 ~g~~~~p~~~~~ir~~~~-------~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RaLE 86 (217) ..+..+|.+.+.+.+.+. +.+...|...+|.+|++.++. .+.+--+-+..|++ T Consensus 4 ~~L~~LPNig~~~e~~L~~iGI~~~~~L~~~ga~~~y~rLk~~~~~----~~~~~L~aL~gAl~ 63 (93) T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSS----VCMSELYALEGAVQ 63 (93) T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTT----CCHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCC----CCHHHHHHHHHHHC T ss_conf 7772489999999999999399989999867999999999986899----60999999999994 No 17 >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Probab=40.37 E-value=11 Score=17.78 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=16.4 Q ss_pred HHHHHHHCCCCEEEECCCCHHHHH Q ss_conf 899999639940897893279999 Q 537021.9.peg.8 4 KKLQRYKKRFLPIIVGGTGLYFRA 27 (217) Q Consensus 4 k~~e~~~r~kiPIiVGGTglY~~a 27 (217) ..++...+.++|+|+|-||+.-.. T Consensus 103 ~~~~~~~~~~~plViGTTG~~~~~ 126 (288) T 3ijp_A 103 LYANYAAQKSLIHIIGTTGFSKTE 126 (288) T ss_dssp HHHHHHHHHTCEEEECCCCCCHHH T ss_pred HHHHHHHHCCCCEEEEECCCCHHH T ss_conf 899999873960798305544225 No 18 >2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibitor, perfectly twinned crystal; HET: AB5; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 1wvb_A* 3e6v_A* 3e6k_A* 1d3v_A* 1hq5_A* ... Probab=39.88 E-value=12 Score=17.52 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=19.8 Q ss_pred HHHHCCCCEEEECCCCHHHHHHHCCC Q ss_conf 99963994089789327999996172 Q 537021.9.peg.8 7 QRYKKRFLPIIVGGTGLYFRALTGQL 32 (217) Q Consensus 7 e~~~r~kiPIiVGGTglY~~all~g~ 32 (217) ++.++|++||++||-+--.-+.+.|+ T Consensus 86 ~i~~~g~~pi~lGGdHsit~~~~~a~ 111 (322) T 2aeb_A 86 EVKKNGRISLVLGGDHSLAIGSISGH 111 (322) T ss_dssp HHHHTTCEEEEEESCGGGHHHHHHHH T ss_pred HHHHCCCEEEEECCCCCCCCCHHHHH T ss_conf 99967975899746887642035678 No 19 >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Probab=37.59 E-value=18 Score=16.26 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=18.6 Q ss_pred HHHHHHHHHCCCCEEEECCCCHHH Q ss_conf 468999996399408978932799 Q 537021.9.peg.8 2 LSKKLQRYKKRFLPIIVGGTGLYF 25 (217) Q Consensus 2 ~~k~~e~~~r~kiPIiVGGTglY~ 25 (217) +...++.....++|+|+|=||+.- T Consensus 58 ~~~~~~~~~~~~~plViGTTG~~~ 81 (245) T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTTGFTA 81 (245) T ss_dssp HHHHHHHHHHTTCEEEECCCCCCH T ss_pred HHHHHHHHHHCCCEEEEECCCCCH T ss_conf 999999999729479998898877 No 20 >1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1 Probab=37.11 E-value=14 Score=17.06 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=20.0 Q ss_pred HHHHCCCCEEEECCCCHHHHHHHCCC Q ss_conf 99963994089789327999996172 Q 537021.9.peg.8 7 QRYKKRFLPIIVGGTGLYFRALTGQL 32 (217) Q Consensus 7 e~~~r~kiPIiVGGTglY~~all~g~ 32 (217) ++.++|++||++||.+----+.+.++ T Consensus 82 ~~~~~g~~pivlGGdHsis~~~~~a~ 107 (306) T 1pq3_A 82 RAVSDGYSCVTLGGDHSLAIGTISGH 107 (306) T ss_dssp HHHHTTCEEEEEESSGGGHHHHHHHH T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHH T ss_conf 99968994267457876540048999 No 21 >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Probab=36.81 E-value=18 Score=16.26 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=15.3 Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 0010786789999999777654211 Q 537021.9.peg.8 114 KIIILPERSALKERIRRRFTQMLES 138 (217) Q Consensus 114 ~i~l~~~r~~L~~rI~~R~~~Ml~~ 138 (217) .+++..||...-..+..|+-..... T Consensus 111 ~I~~tqPRR~aa~s~A~rva~e~~~ 135 (235) T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGE 135 (235) T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTC T ss_pred EEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 5999637379999999999998289 No 22 >1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibiotic; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A Probab=36.63 E-value=12 Score=17.41 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=18.4 Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHC Q ss_conf 99999639940897893279999961 Q 537021.9.peg.8 5 KLQRYKKRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 5 ~~e~~~r~kiPIiVGGTglY~~all~ 30 (217) ..++++.|++||+.||-+--.-+.+. T Consensus 104 v~~~~~~~~~pi~LGGdHsit~~~~~ 129 (313) T 1gq6_A 104 LSGLLKANAAFLMIGGDHSLTVAALR 129 (313) T ss_dssp HHHHHHHSSEEEEEESCGGGHHHHHH T ss_pred HHHHHHCCCEEEEECCCCCCCCCCHH T ss_conf 99998448705885887422322067 No 23 >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Probab=36.39 E-value=11 Score=17.57 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=13.2 Q ss_pred CCCEEEECCCCHHHHHHH Q ss_conf 994089789327999996 Q 537021.9.peg.8 12 RFLPIIVGGTGLYFRALT 29 (217) Q Consensus 12 ~kiPIiVGGTglY~~all 29 (217) .|+.+|+|||||==..|+ T Consensus 1 ~k~~LVTGatGfiG~~L~ 18 (372) T 1db3_A 1 SKVALITGVTGQDGSYLA 18 (372) T ss_dssp CCEEEEETTTSHHHHHHH T ss_pred CCEEEEECCCCHHHHHHH T ss_conf 988999488878999999 No 24 >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Probab=36.06 E-value=14 Score=17.07 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=19.2 Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHH Q ss_conf 68999996399408978932799999 Q 537021.9.peg.8 3 SKKLQRYKKRFLPIIVGGTGLYFRAL 28 (217) Q Consensus 3 ~k~~e~~~r~kiPIiVGGTglY~~al 28 (217) .+.++...+.++|+|+|=||+--..+ T Consensus 67 ~~~l~~~~~~~~plViGTTG~~~~~~ 92 (228) T 1vm6_A 67 PKTVDLCKKYRAGLVLGTTALKEEHL 92 (228) T ss_dssp HHHHHHHHHHTCEEEECCCSCCHHHH T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHH T ss_conf 55689998638764998068887899 No 25 >3mmr_A Arginase; malaria, ABH, LCR, parasite, L-arginine, boronic acid, metallohydrolase, binuclear, manganese, hydrolase; HET: ABH; 2.14A {Plasmodium falciparum 3D7} Probab=34.57 E-value=14 Score=17.08 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=17.1 Q ss_pred HHHHCCCCEEEECCCCHHHHHHHCC Q ss_conf 9996399408978932799999617 Q 537021.9.peg.8 7 QRYKKRFLPIIVGGTGLYFRALTGQ 31 (217) Q Consensus 7 e~~~r~kiPIiVGGTglY~~all~g 31 (217) ++.++|++||+.||-+----..+.| T Consensus 180 ~~l~~g~~PIvLGGDHSia~g~v~g 204 (413) T 3mmr_A 180 NELRKKNFVLNIGGDHGVAFSSILS 204 (413) T ss_dssp HHHTTTCEEEEEESSGGGHHHHHHH T ss_pred HHHHCCCEEEEEECCCHHHHHHHHH T ss_conf 9996799689982762758999999 No 26 >1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A Probab=34.43 E-value=21 Score=15.78 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.1 Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHCCCCC Q ss_conf 99996399408978932799999617244 Q 537021.9.peg.8 6 LQRYKKRFLPIIVGGTGLYFRALTGQLSI 34 (217) Q Consensus 6 ~e~~~r~kiPIiVGGTglY~~all~g~~~ 34 (217) .+++++|++||+.||-+-=.-.++.++.. T Consensus 105 ~~~~~~~~~pi~lGGdHsit~~~~~al~~ 133 (305) T 1woh_A 105 RQVRGRCRVPVFLGGDHSVSYPLLRAFAD 133 (305) T ss_dssp HHHHTTEEEEEEEESSGGGHHHHHGGGTT T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHH T ss_conf 99985898335506776640245666650 No 27 >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Probab=34.40 E-value=16 Score=16.56 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=37.8 Q ss_pred HHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 10000107867899999997776542113456777751138631013442068567789867899989999999999998 Q 537021.9.peg.8 111 SAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIATNK 190 (217) Q Consensus 111 ~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~Tr~ 190 (217) .+.+|++.++.+.|.+|+..|-.. --++++.-++. ...+.....-.+ ..+++--+-+++++.+.+..-..+ T Consensus 117 ~~~I~~~~~~~e~l~~RL~~R~~~-----~~e~i~~Rl~~-~~~e~~~~~~~~---~~D~vI~N~dle~a~~~l~~iI~~ 187 (198) T 1lvg_A 117 PIYIFVQPPSLDVLEQRLRLRNTE-----TEESLAKRLAA-ARTDMESSKEPG---LFDLVIINDDLDKAYATLKQALSE 187 (198) T ss_dssp CEEEEEECSCHHHHHHHHHHHTCS-----CHHHHHHHHHH-HHHHTTGGGSTT---TCSEEEECSSHHHHHHHHHHHTHH T ss_pred CEEEEEECCCHHHHHHHHHHCCCC-----CHHHHHHHHHH-HHHHHHHCHHCC---CCCEEEECCCHHHHHHHHHHHHHH T ss_conf 189999699989999999973898-----67899999999-999998444128---997899890999999999999999 Q ss_pred HHHH Q ss_conf 8888 Q 537021.9.peg.8 191 YAKR 194 (217) Q Consensus 191 yAKR 194 (217) ..|| T Consensus 188 ~~k~ 191 (198) T 1lvg_A 188 EIKK 191 (198) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9866 No 28 >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Probab=33.99 E-value=14 Score=16.98 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=21.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 89998999999999999888887688628887531 Q 537021.9.peg.8 173 GEINYDETLQRGIIATNKYAKRQKTWLCHQFQADW 207 (217) Q Consensus 173 g~~~~~e~~e~~~~~Tr~yAKRQ~TWfr~~~~~~w 207 (217) -+++++++++.....--.+.|++.+--.+.+...| T Consensus 336 P~~~leegi~~ti~~yl~~~k~~~~~~~~~~~~~~ 370 (381) T 1n7h_A 336 PQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAK 370 (381) T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHTTC---- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 68889999999999999999715666538762025 No 29 >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Probab=33.96 E-value=13 Score=17.16 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=14.3 Q ss_pred HHCC--CCEEEECCCCHHHHHHH Q ss_conf 9639--94089789327999996 Q 537021.9.peg.8 9 YKKR--FLPIIVGGTGLYFRALT 29 (217) Q Consensus 9 ~~r~--kiPIiVGGTglY~~all 29 (217) |+++ |+-+|+|||||==..|+ T Consensus 19 ~~~~Mkk~~LITGatGfIGs~l~ 41 (375) T 1t2a_A 19 FQGHMRNVALITGITGQDGSYLA 41 (375) T ss_dssp -----CCEEEEETTTSHHHHHHH T ss_pred HHCCCCCEEEEECCCCHHHHHHH T ss_conf 44079876999608628999999 No 30 >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Probab=33.76 E-value=24 Score=15.45 Aligned_cols=67 Identities=7% Similarity=0.126 Sum_probs=39.0 Q ss_pred HHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHH-HHHHCCCCCHHHHHHHHHHHH Q ss_conf 100001078678999999977765421134567777511386310134420685677-898678999899999999999 Q 537021.9.peg.8 111 SAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDI-IALLKGEINYDETLQRGIIAT 188 (217) Q Consensus 111 ~~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~~IGYke~-~~yL~g~~~~~e~~e~~~~~T 188 (217) ....++|.++.+.+.+|+..|-.......+++.-...++. ..+.|. .-.+++..+.++.++.+...- T Consensus 104 ~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~e~-----------~~~~e~~~i~id~~~~~e~v~~~il~~l 171 (175) T 1knq_A 104 NLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQE-----------PGADETDVLVVDIDQPLEGVVASTIEVI 171 (175) T ss_dssp TEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCC-----------CCTTCTTEEEEECSSCHHHHHHHHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-----------CCCCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 8368751899999999998574789887889989998437-----------7777799899869899999999999999 No 31 >2ef5_A Arginase; TTHA1496, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A Probab=33.64 E-value=10 Score=17.83 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=16.6 Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHCC Q ss_conf 99996399408978932799999617 Q 537021.9.peg.8 6 LQRYKKRFLPIIVGGTGLYFRALTGQ 31 (217) Q Consensus 6 ~e~~~r~kiPIiVGGTglY~~all~g 31 (217) .+.+++|++||++||-+--.-+.+.+ T Consensus 80 ~~~l~~g~~pi~lGGdHsit~~~~~a 105 (290) T 2ef5_A 80 LAALPEGVFPIVLGGDHSLSMGSVAG 105 (290) T ss_dssp HHTSCTTEEEEEEESSGGGHHHHHHH T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHC T ss_conf 86762597569966864245999864 No 32 >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5} Probab=33.06 E-value=6.2 Score=19.31 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=40.6 Q ss_pred HEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 0000107867899999997776542113456777751138631013442068567789867899989999999999 Q 537021.9.peg.8 112 AHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIA 187 (217) Q Consensus 112 ~~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~ 187 (217) ...++|.++.+.+.+|+..|-+..+-+...++++.++... .|. |+++---++.+.+.++.++.+... T Consensus 94 ~~~v~L~~~~e~~~~Rl~~~~~Rp~l~~~~~~~~~~~~~R----~~~-----Y~~ad~~Idt~~~~eeiv~~Il~~ 160 (168) T 2pt5_A 94 GTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEER----RKI-----YSKADIKVKGEKPPEEVVKEILLS 160 (168) T ss_dssp SEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHH----HHH-----HTTSSEEEECSSCHHHHHHHHHHH T ss_pred CCEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----HHH-----HHHCCEEEECCCCHHHHHHHHHHH T ss_conf 8337873588998888524788867468599999999998----999-----984999997989999999999999 No 33 >1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Probab=32.71 E-value=25 Score=15.34 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=41.5 Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHH Q ss_conf 46899999639940897893279999961724488999899999999999622355566553116232023570156999 Q 537021.9.peg.8 2 LSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRI 81 (217) Q Consensus 2 ~~k~~e~~~r~kiPIiVGGTglY~~all~g~~~~p~~~~~ir~~~~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri 81 (217) +.++|+...+..|++..||| |.-.|+..|- + ++..+...+.|-+.+ ++ ....-.+...++.|+ T Consensus 82 L~eKI~l~~~~~V~v~~GGT-lfE~a~~q~~-----~-----d~yl~~~k~lGf~~I-----EI-SdGsi~i~~~~~~~~ 144 (276) T 1u83_A 82 LEEKISTLKEHDITFFFGGT-LFEKYVSQKK-----V-----NEFHRYCTYFGCEYI-----EI-SNGTLPMTNKEKAAY 144 (276) T ss_dssp HHHHHHHHHHTTCEEEECHH-HHHHHHHTTC-----H-----HHHHHHHHHTTCSEE-----EE-CCSSSCCCHHHHHHH T ss_pred HHHHHHHHHHCCCEEECCCH-HHHHHHHHCC-----H-----HHHHHHHHHCCCCEE-----EE-CCCCCCCCHHHHHHH T ss_conf 99999999986996978968-9999998188-----9-----999999998599889-----97-898012898999999 Q ss_pred HHHHHHHHHCCCCHHHH Q ss_conf 99999985348874677 Q 537021.9.peg.8 82 ARALEIKLVSGQSIIEF 98 (217) Q Consensus 82 ~RaLEi~~~tGk~~s~~ 98 (217) +++.. ..+..++|. T Consensus 145 I~~~~---~~~~V~sEv 158 (276) T 1u83_A 145 IADFS---DEFLVLSEV 158 (276) T ss_dssp HHHHT---TTSEEEEEC T ss_pred HHHHH---HCCEECCCC T ss_conf 99998---549345435 No 34 >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Probab=32.68 E-value=25 Score=15.33 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=18.3 Q ss_pred HHHHHHH-CCCCEEEECCCCHHHHHHHC Q ss_conf 8999996-39940897893279999961 Q 537021.9.peg.8 4 KKLQRYK-KRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 4 k~~e~~~-r~kiPIiVGGTglY~~all~ 30 (217) |.-+.|+ .+|.-+|+||||+==++|+. T Consensus 9 ~~~~~~~M~~kkILVtGatG~iG~~lv~ 36 (242) T 2bka_A 9 KLREDFRMQNKSVFILGASGETGRVLLK 36 (242) T ss_dssp HHHHHHHHTCCEEEEECTTSHHHHHHHH T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHHHH T ss_conf 6788607789969999998499999999 No 35 >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Probab=30.79 E-value=17 Score=16.37 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=15.3 Q ss_pred HCCCCEEEECCCCHHHHHHH Q ss_conf 63994089789327999996 Q 537021.9.peg.8 10 KKRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 10 ~r~kiPIiVGGTglY~~all 29 (217) .+||.-+|+|||||==..|+ T Consensus 9 ~~gk~VLVTG~tGfIGs~l~ 28 (342) T 1y1p_A 9 PEGSLVLVTGANGFVASHVV 28 (342) T ss_dssp CTTCEEEEETTTSHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHH T ss_conf 99599999899789999999 No 36 >1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 Probab=29.07 E-value=22 Score=15.66 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=7.6 Q ss_pred EEEECCCHHHH-HHHHHHHHHH Q ss_conf 00107867899-9999977765 Q 537021.9.peg.8 114 KIIILPERSAL-KERIRRRFTQ 134 (217) Q Consensus 114 ~i~l~~~r~~L-~~rI~~R~~~ 134 (217) -++...+.+.+ ..-++..++. T Consensus 162 ~LG~~vp~ee~v~~a~e~~aD~ 183 (262) T 1xrs_B 162 NLGSQVANEDFIKKAVELEADV 183 (262) T ss_dssp ECCSSBCHHHHHHHHHHTTCSE T ss_pred ECCCCCCHHHHHHHHHHCCCCE T ss_conf 6888999999999998649999 No 37 >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* Probab=29.03 E-value=19 Score=16.10 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=12.4 Q ss_pred CCCCEEEECCCCHHHHHH Q ss_conf 399408978932799999 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRAL 28 (217) Q Consensus 11 r~kiPIiVGGTglY~~al 28 (217) +||--+|+|||||==.+| T Consensus 2 ~~KkilVTG~tGfIGs~l 19 (345) T 2z1m_A 2 SGKRALITGIRGQDGAYL 19 (345) T ss_dssp -CCEEEEETTTSHHHHHH T ss_pred CCCEEEEECCCCHHHHHH T ss_conf 709899989987899999 No 38 >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Probab=28.75 E-value=18 Score=16.22 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=13.9 Q ss_pred HCCCCEEEECCCCHHHHHHHC Q ss_conf 639940897893279999961 Q 537021.9.peg.8 10 KKRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 10 ~r~kiPIiVGGTglY~~all~ 30 (217) .++|| +|+||||+==.+++. T Consensus 9 ~k~KV-lV~GaTG~iG~~lv~ 28 (346) T 3i6i_A 9 PKGRV-LIAGATGFIGQFVAT 28 (346) T ss_dssp --CCE-EEECTTSHHHHHHHH T ss_pred CCCEE-EEECCCCHHHHHHHH T ss_conf 99919-998989689999999 No 39 >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Probab=27.90 E-value=11 Score=17.56 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=11.6 Q ss_pred CCCCEEEECCCCHHHHHHH Q ss_conf 3994089789327999996 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 11 r~kiPIiVGGTglY~~all 29 (217) +.|| +|+|||||==..|+ T Consensus 3 ~KkI-lITG~tGfiG~~l~ 20 (321) T 1e6u_A 3 KQRV-FIAGHRGMVGSAIR 20 (321) T ss_dssp CEEE-EEETTTSHHHHHHH T ss_pred CCEE-EEECCCCHHHHHHH T ss_conf 8869-99848748999999 No 40 >1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Probab=27.42 E-value=22 Score=15.72 Aligned_cols=40 Identities=13% Similarity=0.406 Sum_probs=25.3 Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCC--HHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 456777751138631013442068--56778986789998999999999 Q 537021.9.peg.8 140 AIDEIRSLMKMNLSLDLPIMKAIG--VRDIIALLKGEINYDETLQRGII 186 (217) Q Consensus 140 lieEv~~L~~~~~~~~~~~~~~IG--Yke~~~yL~g~~~~~e~~e~~~~ 186 (217) +++||+.+- ..-+.|+| .-++..|-+..+.+|+.++..++ T Consensus 2 ~VDEVkDME-------iAkLMSLGl~id~A~~~Ye~gi~ye~~i~~~k~ 43 (47) T 1pgy_A 2 LVDEVKDME-------IARLMSLGLSIEEATEFYENDVTYERYLEILKS 43 (47) T ss_dssp CSHHHHHHH-------HHHHHHHCCCSHHHHHHHHHHCSSHHHHHHHHH T ss_pred HHHHHHHHH-------HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 015998899-------999998127856778999746449999999987 No 41 >2x6t_A AGME,, ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Probab=26.91 E-value=20 Score=15.92 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.6 Q ss_pred CCCCEEEECCCCHHHHHH Q ss_conf 399408978932799999 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRAL 28 (217) Q Consensus 11 r~kiPIiVGGTglY~~al 28 (217) +||--+|+|||||==..| T Consensus 45 ~~KkILVTGgtGfIGs~l 62 (357) T 2x6t_A 45 EGRMIIVTGGAGFIGSNI 62 (357) T ss_dssp ---CEEEETTTSHHHHHH T ss_pred CCCEEEEECCCCHHHHHH T ss_conf 979999948987899999 No 42 >2waq_Q DNA-directed RNA polymerase RPO13 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_J Probab=26.61 E-value=17 Score=16.42 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=21.5 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 86789998999999999999888887 Q 537021.9.peg.8 170 LLKGEINYDETLQRGIIATNKYAKRQ 195 (217) Q Consensus 170 yL~g~~~~~e~~e~~~~~Tr~yAKRQ 195 (217) .|+|++|.+|+...+.-+-+.|.||- T Consensus 54 Ll~gkiSieEAKk~Fed~~~~Y~K~D 79 (104) T 2waq_Q 54 LLNGKISVDEAKRLFEDNYKDYEKRD 79 (104) T ss_dssp TTCCSSSHHHHHHHHHHHHTTTTCCC T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 87575339999999999899988878 No 43 >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Probab=26.48 E-value=26 Score=15.20 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=14.1 Q ss_pred HHCCCCEEEECCCCHHHHHHH Q ss_conf 963994089789327999996 Q 537021.9.peg.8 9 YKKRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 9 ~~r~kiPIiVGGTglY~~all 29 (217) |=+||--+|+|||||==..|+ T Consensus 6 ~~~~KkILVTGgtGfIGs~L~ 26 (357) T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLS 26 (357) T ss_dssp HHTTCEEEEETTTSHHHHHHH T ss_pred CCCCCEEEEECCCCHHHHHHH T ss_conf 579598999689978999999 No 44 >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Probab=26.09 E-value=24 Score=15.51 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=14.5 Q ss_pred CCCCEEEECCCCHHHHHHHC Q ss_conf 39940897893279999961 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 11 r~kiPIiVGGTglY~~all~ 30 (217) +||.-+|+|||||==..|+. T Consensus 20 ~nK~ILVTGg~GfiGs~lv~ 39 (344) T 2gn4_A 20 DNQTILITGGTGSFGKCFVR 39 (344) T ss_dssp TTCEEEEETTTSHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHH T ss_conf 86999998988789999999 No 45 >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Probab=25.42 E-value=24 Score=15.43 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=14.8 Q ss_pred CCCCEEEECCCCHHHHHHHC Q ss_conf 39940897893279999961 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 11 r~kiPIiVGGTglY~~all~ 30 (217) ..|.-+|+|||||==.+|+. T Consensus 8 ~~K~vlVTGatGfIG~~l~~ 27 (338) T 2rh8_A 8 GKKTACVVGGTGFVASLLVK 27 (338) T ss_dssp -CCEEEEECTTSHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHH T ss_conf 99989997797399999999 No 46 >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Probab=25.39 E-value=20 Score=16.02 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=12.5 Q ss_pred CCCCEEEECCCCHHHHHHH Q ss_conf 3994089789327999996 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 11 r~kiPIiVGGTglY~~all 29 (217) |.|| +|+||||+-=..++ T Consensus 4 k~KI-LVtGatG~iG~~l~ 21 (313) T 1qyd_A 4 KSRV-LIVGGTGYIGKRIV 21 (313) T ss_dssp CCCE-EEESTTSTTHHHHH T ss_pred CCEE-EEECCCCHHHHHHH T ss_conf 9989-99899848999999 No 47 >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Probab=25.38 E-value=20 Score=16.02 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=13.4 Q ss_pred CCCCEEEECCCCHHHHHHHC Q ss_conf 39940897893279999961 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 11 r~kiPIiVGGTglY~~all~ 30 (217) +.|| +|+||||+==.+|+. T Consensus 4 k~kI-LVtGatG~iG~~lv~ 22 (308) T 1qyc_A 4 RSRI-LLIGATGYIGRHVAK 22 (308) T ss_dssp CCCE-EEESTTSTTHHHHHH T ss_pred CCEE-EEECCCCHHHHHHHH T ss_conf 9979-998988389999999 No 48 >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Probab=25.02 E-value=18 Score=16.35 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=14.2 Q ss_pred HCCCCEEEECCCCHHHHHHH Q ss_conf 63994089789327999996 Q 537021.9.peg.8 10 KKRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 10 ~r~kiPIiVGGTglY~~all 29 (217) ..||.-+|+|||||==.+|+ T Consensus 3 ~~~k~VlITGatGfiG~~l~ 22 (337) T 2c29_D 3 SQSETVCVTGASGFIGSWLV 22 (337) T ss_dssp ---CEEEETTTTSHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHH T ss_conf 99988999889869999999 No 49 >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Probab=23.97 E-value=32 Score=14.65 Aligned_cols=71 Identities=11% Similarity=-0.027 Sum_probs=33.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 000107867899999997776542113456777751138631013442068567789867899989999999999 Q 537021.9.peg.8 113 HKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIA 187 (217) Q Consensus 113 ~~i~l~~~r~~L~~rI~~R~~~Ml~~GlieEv~~L~~~~~~~~~~~~~~IGYke~~~yL~g~~~~~e~~e~~~~~ 187 (217) ++|+|+.|.+++.+|+.+|-.. ....++.-.......+.......+... ..+-+++|..+.++....+... T Consensus 132 ~~Ifld~~~e~~~~R~~~R~~~--~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~ii~id~~~s~e~i~~~I~~~ 202 (207) T 2qt1_A 132 RSYFLTIPYEECKRRRSTRVYQ--PPDSPGYFDGHVWPMYLKYRQEMQDIT--WEVVYLDGTKSEEDLFLQVYED 202 (207) T ss_dssp EEEEEECCHHHHHHHHHHSCCS--SCCCTTHHHHTHHHHHHHHHHHGGGCS--SCCEEEETTSCHHHHHHHHHHH T ss_pred EEEEEECCHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHH T ss_conf 5799988989999999975999--875599999999899999987888548--8699899988999999999999 No 50 >2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} Probab=22.59 E-value=38 Score=14.18 Aligned_cols=14 Identities=0% Similarity=-0.202 Sum_probs=5.5 Q ss_pred EEECCCHHHHHHHH Q ss_conf 01078678999999 Q 537021.9.peg.8 115 IIILPERSALKERI 128 (217) Q Consensus 115 i~l~~~r~~L~~rI 128 (217) ++.+.|.+.+-+.+ T Consensus 157 LG~~~p~e~i~~~v 170 (258) T 2i2x_B 157 LGRDVPAEEVLAAV 170 (258) T ss_dssp EEEECCSHHHHHHH T ss_pred CCCCCCHHHHHHHH T ss_conf 89989999999999 No 51 >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Probab=22.47 E-value=26 Score=15.18 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=13.5 Q ss_pred CCCCEEEECCCCHHHHHHHC Q ss_conf 39940897893279999961 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 11 r~kiPIiVGGTglY~~all~ 30 (217) +.|| +|+||||+==.+|+. T Consensus 11 k~KI-lVtGatG~iG~~l~~ 29 (318) T 2r6j_A 11 KSKI-LIFGGTGYIGNHMVK 29 (318) T ss_dssp CCCE-EEETTTSTTHHHHHH T ss_pred CCEE-EEECCCCHHHHHHHH T ss_conf 9839-998999689999999 No 52 >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium frigidimaris KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Probab=22.43 E-value=29 Score=14.89 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=11.9 Q ss_pred CCCEEEECCCCHHHHHHH Q ss_conf 994089789327999996 Q 537021.9.peg.8 12 RFLPIIVGGTGLYFRALT 29 (217) Q Consensus 12 ~kiPIiVGGTglY~~all 29 (217) .|| +|+|||||==..|+ T Consensus 3 kKI-LItG~sGfiG~~l~ 19 (312) T 2yy7_A 3 PKI-LIIGACGQIGTELT 19 (312) T ss_dssp CCE-EEETTTSHHHHHHH T ss_pred CEE-EEECCCCHHHHHHH T ss_conf 709-99758988999999 No 53 >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, GALE, NAD, SYK, UDP, N- acetylglucosamine, N-acetylgalactosamine, UDP-GLC; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Probab=22.40 E-value=28 Score=15.00 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=13.4 Q ss_pred CCCCEEEECCCCHHHHHHH Q ss_conf 3994089789327999996 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 11 r~kiPIiVGGTglY~~all 29 (217) .-|+-+|+|||||==..|+ T Consensus 26 ~~K~~LVTG~tGfIGs~lv 44 (352) T 1sb8_A 26 QPKVWLITGVAGFIGSNLL 44 (352) T ss_dssp SCCEEEEETTTSHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHH T ss_conf 9998999678878999999 No 54 >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Probab=22.19 E-value=27 Score=15.10 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=13.3 Q ss_pred CCCCEEEECCCCHHHHHHHC Q ss_conf 39940897893279999961 Q 537021.9.peg.8 11 KRFLPIIVGGTGLYFRALTG 30 (217) Q Consensus 11 r~kiPIiVGGTglY~~all~ 30 (217) ++|| +|+||||+==.+|+. T Consensus 2 ~~KI-LVtGatG~iG~~lv~ 20 (307) T 2gas_A 2 ENKI-LILGPTGAIGRHIVW 20 (307) T ss_dssp CCCE-EEESTTSTTHHHHHH T ss_pred CCEE-EEECCCCHHHHHHHH T ss_conf 8879-998998489999999 No 55 >3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus} Probab=22.09 E-value=17 Score=16.38 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=20.9 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 986789998999999999999888887 Q 537021.9.peg.8 169 ALLKGEINYDETLQRGIIATNKYAKRQ 195 (217) Q Consensus 169 ~yL~g~~~~~e~~e~~~~~Tr~yAKRQ 195 (217) ..|+|+++.+++...+.-+-+.|.||- T Consensus 53 ~Ll~gkiSieEAKk~Fed~~~~Y~K~D 79 (104) T 3hkz_Y 53 NLLNGKITLEEAKKLFEDNYKEYEKRD 79 (104) T ss_dssp HTTCCSSHHHHHHHHHHHHHTTTTCCC T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 987575339999999999899988877 No 56 >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Probab=21.53 E-value=40 Score=14.04 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=21.6 Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHCC Q ss_conf 468999996399408978932799999617 Q 537021.9.peg.8 2 LSKKLQRYKKRFLPIIVGGTGLYFRALTGQ 31 (217) Q Consensus 2 ~~k~~e~~~r~kiPIiVGGTglY~~all~g 31 (217) +.++|+...+..|++..|||-|= .++..| T Consensus 57 L~eKI~l~~~~~V~v~~GGtlfE-~a~~q~ 85 (251) T 1qwg_A 57 VKEKINYYKDWGIKVYPGGTLFE-YAYSKG 85 (251) T ss_dssp HHHHHHHHHTTTCEEEECHHHHH-HHHHTT T ss_pred HHHHHHHHHHCCCEEECCCHHHH-HHHHCC T ss_conf 99999999986982757957999-999749 No 57 >2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B Probab=20.38 E-value=42 Score=13.88 Aligned_cols=47 Identities=19% Similarity=0.455 Sum_probs=33.6 Q ss_pred CCCHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHH Q ss_conf 999899999999----9996223555665531162320235701569999999 Q 537021.9.peg.8 37 EIPTAIREKIRE----KLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARAL 85 (217) Q Consensus 37 ~~~~~ir~~~~~----~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RaL 85 (217) ++|..|..+|+- .++.. .+++|.+..+ ||+.+....++|..|+.+.. T Consensus 30 piP~~IadkLrGr~F~sFd~F-R~afW~eVa~-Dp~L~~QF~~~N~~rmk~G~ 80 (131) T 2jb0_B 30 PVPDRIANKLRDKEFKSFDDF-RKKFWEEVSK-DPELSKQFSRNNNDRMKVGK 80 (131) T ss_dssp ECBHHHHHHHTTCEESSHHHH-HHHHHHHHHH-CHHHHTTSCHHHHHHHHTTC T ss_pred CCCHHHHHHHCCCCCCCHHHH-HHHHHHHHHH-CHHHHHHHCHHHHHHHHCCC T ss_conf 787899998668857888999-9999999831-99999985888899987789 No 58 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Probab=20.14 E-value=36 Score=14.32 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=16.9 Q ss_pred HHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 999963994089789327999996 Q 537021.9.peg.8 6 LQRYKKRFLPIIVGGTGLYFRALT 29 (217) Q Consensus 6 ~e~~~r~kiPIiVGGTglY~~all 29 (217) ++-...+|+-+|+|||||==..|+ T Consensus 5 ~~~~~~~K~ILITGatGFIGs~Lv 28 (699) T 1z45_A 5 LQSESTSKIVLVTGGAGYIGSHTV 28 (699) T ss_dssp ------CCEEEEETTTSHHHHHHH T ss_pred HHCCCCCCEEEEECCCCHHHHHHH T ss_conf 647799998999589848999999 Done!