RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= 537021.9.peg.888_1
(217 letters)
>3eph_A TRNA isopentenyltransferase; transferase, alternative
initiation, ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
(A:1-111,A:185-343)
Length = 270
Score = 89.7 bits (222), Expect = 3e-19
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 107 IPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLMK-------MNLSLDLPIM 159
+ + + L +R+ R MLE GA+ EI+ L + + +
Sbjct: 111 RLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVW 170
Query: 160 KAIGVRDIIALLKGE-----INYDETLQRGIIATNKYAKRQKTWLCHQFQADWIR 209
+ IG ++ + L G+ + ++ ++R T +YAKRQ W+ D
Sbjct: 171 QVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKG 225
Score = 28.1 bits (62), Expect = 1.1
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 14/150 (9%)
Query: 7 QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAI---REKIREKLKQYGSHILHDELS 63
+++ +PI+VGGT Y + L + + + E + ++L +L
Sbjct: 86 DIHRRGKIPIVVGGTHYYLQTLFNKRLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGAL 145
Query: 64 SLDSIVARQIHPSDGQRIARALEIKLVSGQSI--IEFW----KQAPNPFIPLESAHKIII 117
+Q++ Q + + Q I EF + + + LE + +
Sbjct: 146 Q----EIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMK 201
Query: 118 LPERSALKERIRRRFTQMLESGAIDEIRSL 147
R K R + +ML +I L
Sbjct: 202 TRTRQYAK-RQVKWIKKMLIPDIKGDIYLL 230
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase;
ATP-binding, nucleotide-binding, nucleotidyltransferase,
tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB:
3crq_A 3crr_A (A:213-296)
Length = 84
Score = 87.5 bits (217), Expect = 1e-18
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDE 179
R L RI +RF QMLE G I E+ +L +L LP ++A+G R + L G+++Y E
Sbjct: 1 RQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAE 60
Query: 180 TLQRGIIATNKYAKRQKTWL 199
+RGIIAT + AKRQ TWL
Sbjct: 61 MTERGIIATRQLAKRQFTWL 80
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase;
nucleoside modification, isopentenyl-tRNA transferase,
MIAA, transferase/RNA complex; 2.50A {Escherichia coli
k-12} PDB: 2zxu_A* 2zm5_A (A:206-289)
Length = 84
Score = 86.8 bits (215), Expect = 2e-18
Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKM-NLSLDLPIMKAIGVRDIIALLKGEINYDE 179
R L +RI +RF QML SG E+R+L +L DLP ++ +G R + + L+GEI+YDE
Sbjct: 2 RELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDE 61
Query: 180 TLQRGIIATNKYAKRQKTWL 199
+ RG+ AT + AKRQ TWL
Sbjct: 62 MVYRGVCATRQLAKRQITWL 81
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase;
alpha-beta protein, structural genomics, PSI-2, protein
structure initiative; 2.30A {Bacillus halodurans} PDB:
2qgn_A (A:201-282)
Length = 82
Score = 84.4 bits (209), Expect = 1e-17
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDET 180
R L +RI RR Q +E G IDE + L + D ++AIG ++ L G + +E
Sbjct: 1 RDVLYDRINRRVDQXVEEGLIDEAKKLYDRGIR-DCQSVQAIGYKEXYDYLDGNVTLEEA 59
Query: 181 LQRGIIATNKYAKRQKTWLCHQ 202
+ + +YAKRQ TW ++
Sbjct: 60 IDTLKRNSRRYAKRQLTWFRNK 81
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase;
alpha-beta protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228} (A:207-288)
Length = 82
Score = 84.0 bits (208), Expect = 1e-17
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 121 RSALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDET 180
R L RI +R L G +E++ L++ +AIG ++++ ++KG I+ +
Sbjct: 1 RETLYLRINKRVDIXLGHGLFNEVQHLVEQGFE-ASQSXQAIGYKELVPVIKGNISXENA 59
Query: 181 LQRGIIATNKYAKRQKTWLCHQ 202
+++ + +YAKRQ TW ++
Sbjct: 60 VEKLKQHSRQYAKRQLTWFKNK 81
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein;
HET: ATP; 2.37A {Humulus lupulus} (A:184-294)
Length = 111
Score = 78.6 bits (193), Expect = 7e-16
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 24/108 (22%)
Query: 124 LKERIRRRFTQMLESGAIDEIRSLMKM-------NLSLDLPIMKAIGVRDIIALLKGEIN 176
L + + +R MLE G DE+ + + + KAIGV + +
Sbjct: 4 LTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRP 63
Query: 177 -----------------YDETLQRGIIATNKYAKRQKTWLCHQFQADW 207
++E ++ T AKRQ + A W
Sbjct: 64 GDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGW 111
>3eph_A TRNA isopentenyltransferase; transferase, alternative
initiation, ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:112-184)
Length = 73
Score = 70.5 bits (173), Expect = 2e-13
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 35 MPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQS 94
+ K + L+ ++++ L D +A + HP+D +R+ R LEI +G+
Sbjct: 3 TKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKK 62
Query: 95 IIEFWKQAP 103
E + +
Sbjct: 63 PSETFNEQK 71
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase;
ATP-binding, nucleotide-binding, nucleotidyltransferase,
tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB:
3crq_A 3crr_A (A:1-212,A:297-323)
Length = 239
Score = 64.5 bits (156), Expect = 1e-11
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
+ +P++VGGT LY++AL L+ MP +R I + + G LH +L+ +D
Sbjct: 91 TARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPE 150
Query: 69 VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERI 128
A +IHP+D QR+ RALE+ + G S+ + ++ + + + I
Sbjct: 151 SAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAE--KADFDASGRNQLPYTVAQLAI 208
Query: 129 RRRF 132
Sbjct: 209 APEQ 212
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase;
alpha-beta protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228} (A:120-181)
Length = 62
Score = 60.5 bits (147), Expect = 2e-10
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 36 PEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQ 93
+ ++ K++E L+ ++ LH+ L+S D A+ IHP++ +R+ RA+E L + +
Sbjct: 6 EDKXKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKK 62
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase;
alpha-beta protein, structural genomics, PSI-2, protein
structure initiative; 2.30A {Bacillus halodurans} PDB:
2qgn_A (A:1-200,A:283-322)
Length = 240
Score = 56.7 bits (136), Expect = 2e-09
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 15 PIIVGGTGLYFRALTGQLS-IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQI 73
P +VGGTGLY A+ Q + R ++ + YG LHD+LS +D A I
Sbjct: 95 PFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAI 154
Query: 74 HPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLES 111
HP++ +R+ RALEI ++G+++ E + P
Sbjct: 155 HPNNYRRVIRALEIIKLTGKTVTEQARHEEETPSPYNL 192
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase;
nucleoside modification, isopentenyl-tRNA transferase,
MIAA, transferase/RNA complex; 2.50A {Escherichia coli
k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316)
Length = 232
Score = 56.1 bits (134), Expect = 3e-09
Identities = 34/97 (35%), Positives = 59/97 (60%)
Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
+P++VGGT LYF+AL LS +P +R +I ++ + G LH +L +D +
Sbjct: 96 TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPV 155
Query: 69 VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNP 105
A +IHP+D QR++RALE+ +SG+++ E + + +
Sbjct: 156 AAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDA 192
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis, plasmid; HET: DST AMP; 2.10A
{Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
(A:1-125)
Length = 125
Score = 36.0 bits (83), Expect = 0.004
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREK 45
K I+ GG+ + ++
Sbjct: 87 RKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRL 123
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase;
alpha-beta protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
(A:1-119,A:196-206,A:289-340)
Length = 182
Score = 29.6 bits (66), Expect = 0.29
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 9 YKKRFLPIIVGGTGLYFRALT 29
++ +PII GGTGLY ++L
Sbjct: 93 TRRGKVPIIAGGTGLYIQSLL 113
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
fructose-1,6-bisphosphate aldolase, glycolytic pathway,
giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:)
Length = 323
Score = 29.1 bits (65), Expect = 0.44
Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 22/145 (15%)
Query: 22 GLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDG--- 78
G Y + + + I + L +GS + ++ + + ++ + G
Sbjct: 179 GAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPI 238
Query: 79 QRIARAL-----------EIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKER 127
+ I A+ + ++ +I + + + P F P + + P R A+ E
Sbjct: 239 ESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRD-----YLGPGRDAITEM 293
Query: 128 IRRRFTQMLESGAIDEIRSLMKMNL 152
+ + +G + + ++L
Sbjct: 294 LIPKIKAFGSAGHAGDYK---VVSL 315
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 2wv2_A* 3khm_A*
3k1o_A* 2wx2_A* 2wuz_A* (A:74-327,A:381-450)
Length = 324
Score = 28.9 bits (63), Expect = 0.58
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 17/113 (15%)
Query: 35 MPEIPTAIREKIREKLKQYGSHILHDELSSLDSIV--ARQIHPSD--------------G 78
+ A+R++I E Q + + DE+ + + + P + G
Sbjct: 212 NVKHLEALRKEIEEFPAQLNYNNVMDEMPFAERCARESIRRDPVEGAFIGFGAGVHKCIG 271
Query: 79 QRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRR 131
Q+ L++K + + + Q +P H +++ P S + + RR
Sbjct: 272 QKFGL-LQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYIRR 323
>3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.89A {Novosphingobium aromaticivorans DSM12444}
(A:156-262)
Length = 107
Score = 27.0 bits (60), Expect = 2.0
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148
+P + + ++ + E + + R + A I L
Sbjct: 24 RLLP-DLSGHVVXIEEVAEHHYAVDRLLFHVTSCLADAGIAGLR 66
>3l6d_A Putative oxidoreductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A
{Pseudomonas putida} (A:1-168)
Length = 168
Score = 27.2 bits (59), Expect = 2.0
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 2/59 (3%)
Query: 1 MLSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
L + + ++ + + + E+ R L+ H +
Sbjct: 110 ALQGLVNQAGGHYVKGXIVAYPRN--VGHRESHSIHTGDREAFEQHRALLEGLAGHTVF 166
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function,
structural genomics, PSI-2, protein structure
initiative; NMR {Bacillus cereus atcc 14579} (A:)
Length = 117
Score = 26.7 bits (59), Expect = 2.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 37 EIPTAIREKIREKLKQYGSH 56
++P +++K KL+ + H
Sbjct: 97 DLPEKVKDKFTIKLEHHHHH 116
>3gjz_A Microcin immunity protein MCCF; niaid structural genomic
centers for infectious diseases, csgid, immune system,
structural genomics; 2.10A {Bacillus anthracis str}
(A:143-336)
Length = 194
Score = 26.4 bits (58), Expect = 2.8
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148
P+ P I+ + + S I R F+ + +G D++ ++
Sbjct: 82 PYXPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGII 125
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus
rimd 2210633} (A:)
Length = 129
Score = 26.5 bits (58), Expect = 3.0
Identities = 9/60 (15%), Positives = 20/60 (33%)
Query: 50 LKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPL 109
+ YG + L + + ++ P R A + ++ +E P I +
Sbjct: 16 SRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILV 75
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: TLA PEG; 1.10A
{Pseudomonas aeruginosa} (A:119-311)
Length = 193
Score = 26.4 bits (58), Expect = 3.4
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEIRSLM 148
A I++L + R+ R Q+LES ++ ++
Sbjct: 87 LGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAIC 130
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics,
dimer; 2.40A {Thermoplasma acidophilum}
(A:1-44,A:96-165,A:229-328)
Length = 214
Score = 25.8 bits (56), Expect = 4.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 117 ILPERSALKERIRRRFTQMLESGAIDEIRSL 147
PE +++ I + + E+ I L
Sbjct: 15 FYPEDXDVEKFIFKTAEEAAEAFGFRRIDFL 45
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron,
3D-structure, hydrogen peroxide; HET: OMT HEM; 1.97A
{Vibrio salmonicida LFI1238} PDB: 1m85_A* 1mqf_A*
1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
(A:50-483)
Length = 434
Score = 25.9 bits (56), Expect = 4.6
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 71 RQIHPSDGQRIARALEIKL 89
+ P+ G+ I + L +
Sbjct: 411 YKADPAYGEGIGKLLGFDI 429
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG,
Q812L6 protein, GFT structural genomics, PSI-2, protein
structure initiative; NMR {Bacillus cereus atcc 14579}
(A:)
Length = 105
Score = 25.5 bits (56), Expect = 5.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 37 EIPTAIREKIREKLKQYGSH 56
E+P ++EK+ KL+ + H
Sbjct: 85 ELPAKVKEKLGVKLEHHHHH 104
>2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase;
HET: NAG HDD; 1.71A {Penicillium janthinellum}
(A:60-511)
Length = 452
Score = 25.6 bits (55), Expect = 5.5
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 71 RQIHPSDGQRIARALEIKL 89
+I + R+A A+ ++
Sbjct: 424 NRISDNLATRVASAIGVEA 442
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans} (A:53-491)
Length = 439
Score = 25.5 bits (55), Expect = 5.6
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 71 RQIHPSDGQRIARALEIKL 89
+ S G++++ AL + +
Sbjct: 412 YRADASLGEKLSEALNVDI 430
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural
genomics, PSI, protein structure initiative; 2.50A
{Bacillus subtilis} (A:)
Length = 220
Score = 25.5 bits (56), Expect = 5.6
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 40 TAIREKIREKLKQYGSHILHDELSSL 65
++E +R KL G H LS+L
Sbjct: 24 EVLKETVRPKLTALGEHFA-PTLSAL 48
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH;
1.45A {Escherichia coli} (A:)
Length = 286
Score = 25.6 bits (56), Expect = 5.7
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 34 IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIAR---ALEIKLV 90
I + IRE + L +G+ + DE + + + + A E+K+
Sbjct: 189 IDFQRLAEIREVVDVPLVLHGASDVPDE----------FVRRTIELGVTKVNVATELKIA 238
Query: 91 SGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRF 132
++ ++ + P P + A+KE +R +
Sbjct: 239 FAGAVKAWFAENPQGNDPRY-----YMRVGMDAMKEVVRNKI 275
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase;
3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657)
Length = 300
Score = 25.2 bits (55), Expect = 6.4
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 42 IREKIREKLKQYGSHILHDELSSLDSIVARQI 73
RE L++ + D+ ++ + I
Sbjct: 79 KREAFNAALQKAFEQYITDKSAAWTLTAEKDI 110
>1vcs_A Vesicle transport through interaction with T- snares homolog
1A; HABC domain, VTI1, UP and DOWN three helix bundle,
LEFT-handed twist; NMR {Mus musculus} (A:)
Length = 102
Score = 25.5 bits (56), Expect = 6.4
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 37 EIPTAIREKIREKLKQYGSHI--LHDELSSLDSIVARQ 72
EIP R +++ Y + L +
Sbjct: 63 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGPS 100
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel,
wrapping region, C-terminal helical region, tetramer,
heme group; HET: HEM; 2.30A {Enterococcus faecalis V583}
(A:51-484)
Length = 434
Score = 25.2 bits (54), Expect = 6.4
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 71 RQIHPSDGQRIARALEIKL 89
+++P G R+A+A++ +
Sbjct: 410 TRVNPEYGARVAQAIKQQA 428
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus}
(A:)
Length = 139
Score = 24.7 bits (54), Expect = 9.5
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 157 PIMKAIGVRDIIALLKGEINYDETLQRGI 185
P++ + V +I + GE + ++ +
Sbjct: 3 PVLAGLSVEEIREAVSGEYLIEPREEKXV 31
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.139 0.399
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,718,182
Number of extensions: 78852
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 44
Length of query: 217
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 132
Effective length of database: 2,082,624
Effective search space: 274906368
Effective search space used: 274906368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)