RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.888_1
         (217 letters)



>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside
           modification, isopentenyl-tRNA transferase, MIAA,
           transferase/RNA complex; 2.50A {Escherichia coli k-12}
           PDB: 2zxu_A* 2zm5_A
          Length = 316

 Score =  150 bits (380), Expect = 2e-37
 Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 2/209 (0%)

Query: 9   YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
                +P++VGGT LYF+AL   LS +P     +R +I ++  + G   LH +L  +D +
Sbjct: 96  TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPV 155

Query: 69  VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERI 128
            A +IHP+D QR++RALE+  +SG+++ E   Q     +P +     I    R  L +RI
Sbjct: 156 AAARIHPNDPQRLSRALEVFFISGKTLTE-LTQTSGDALPYQVHQFAIAPASRELLHQRI 214

Query: 129 RRRFTQMLESGAIDEIRSLM-KMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIA 187
            +RF QML SG   E+R+L  + +L  DLP ++ +G R + + L+GEI+YDE + RG+ A
Sbjct: 215 EQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCA 274

Query: 188 TNKYAKRQKTWLCHQFQADWIRISSIDDL 216
           T + AKRQ TWL       W+     +  
Sbjct: 275 TRQLAKRQITWLRGWEGVHWLDSEKPEQA 303


>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
           nucleotide-binding, nucleotidyltransferase, tRNA
           processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
           3crr_A
          Length = 323

 Score =  124 bits (313), Expect = 1e-29
 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 11/213 (5%)

Query: 15  PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIH 74
           P++VGGT LY++AL   L+ MP     +R  I  + +  G   LH +L+ +D   A +IH
Sbjct: 97  PLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIH 156

Query: 75  PSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHK----------IIILPERSAL 124
           P+D QR+ RALE+  + G S+ +  ++        +++ +           I   +R  L
Sbjct: 157 PNDPQRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVL 216

Query: 125 KERIRRRFTQMLESGAIDEIRSLMKMNL-SLDLPIMKAIGVRDIIALLKGEINYDETLQR 183
             RI +RF QMLE G I E+ +L   +     LP ++A+G R +   L G+++Y E  +R
Sbjct: 217 HARIAQRFRQMLEQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTER 276

Query: 184 GIIATNKYAKRQKTWLCHQFQADWIRISSIDDL 216
           GIIAT + AKRQ TWL       W+   + D+L
Sbjct: 277 GIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNL 309


>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
           protein, structural genomics, PSI-2; 2.70A
           {Staphylococcus epidermidis atcc 12228}
          Length = 340

 Score =  119 bits (298), Expect = 7e-28
 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 7/212 (3%)

Query: 7   QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQY----GSHILHDEL 62
              ++  +PII GGTGLY ++L    +   E  +  + K  +   +      ++ LH+ L
Sbjct: 91  DITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYL 150

Query: 63  SSLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERS 122
           +S D   A+ IHP++ +R+ RA+E  L + + +    ++    F        I I   R 
Sbjct: 151 ASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLL--SSRKKVQQFTENYDTLLIGIEMSRE 208

Query: 123 ALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQ 182
            L  RI +R   ML  G  +E++ L++         M+AIG ++++ ++KG I+ +  ++
Sbjct: 209 TLYLRINKRVDIMLGHGLFNEVQHLVEQGFEAS-QSMQAIGYKELVPVIKGNISMENAVE 267

Query: 183 RGIIATNKYAKRQKTWLCHQFQADWIRISSID 214
           +    + +YAKRQ TW  ++    W+    + 
Sbjct: 268 KLKQHSRQYAKRQLTWFKNKMNVHWLNKERMS 299


>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
           protein, structural genomics, PSI-2, protein structure
           initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
          Length = 322

 Score =  105 bits (263), Expect = 8e-24
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 3/207 (1%)

Query: 9   YKKRFLPIIVGGTGLYFRALT-GQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDS 67
           +++  LP +VGGTGLY  A+               R ++   +  YG   LHD+LS +D 
Sbjct: 89  HERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDP 148

Query: 68  IVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKER 127
             A  IHP++ +R+ RALEI  ++G+++ E  +       P      I +  ER  L +R
Sbjct: 149 KAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEEETPSPYNL-VMIGLTMERDVLYDR 207

Query: 128 IRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIA 187
           I RR  QM+E G IDE + L    +      ++AIG +++   L G +  +E +      
Sbjct: 208 INRRVDQMVEEGLIDEAKKLYDRGIRDC-QSVQAIGYKEMYDYLDGNVTLEEAIDTLKRN 266

Query: 188 TNKYAKRQKTWLCHQFQADWIRISSID 214
           + +YAKRQ TW  ++    W  ++ +D
Sbjct: 267 SRRYAKRQLTWFRNKANVTWFDMTDVD 293


>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
           ATP-binding, cytoplasm, mitochondrion,
           nucleotide-binding, nucleus; 2.95A {Saccharomyces
           cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
          Length = 409

 Score = 82.6 bits (203), Expect = 7e-17
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 14/205 (6%)

Query: 15  PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIH 74
           PI+VGGT  Y + L  +          +  K  + L+     ++++ L   D  +A + H
Sbjct: 94  PIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYH 153

Query: 75  PSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQ 134
           P+D +R+ R LEI   +G+   E + +             + +  +   L +R+  R   
Sbjct: 154 PNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKF--DTLFLWLYSKPEPLFQRLDDRVDD 211

Query: 135 MLESGAIDEIRSLMKMNL-------SLDLPIMKAIGVRDIIALLKGE-----INYDETLQ 182
           MLE GA+ EI+ L +            +  + + IG ++ +  L G+     +  ++ ++
Sbjct: 212 MLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIE 271

Query: 183 RGIIATNKYAKRQKTWLCHQFQADW 207
           R    T +YAKRQ  W+      D 
Sbjct: 272 RMKTRTRQYAKRQVKWIKKMLIPDI 296


>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
           2.37A {Humulus lupulus}
          Length = 339

 Score = 80.6 bits (198), Expect = 3e-16
 Identities = 36/222 (16%), Positives = 57/222 (25%), Gaps = 79/222 (35%)

Query: 10  KKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIV 69
            +R LP++VGG+  +  AL                             L D   S    V
Sbjct: 128 GRRKLPVLVGGSNSFIHAL-----------------------------LVDRFDSSGPGV 158

Query: 70  ARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIR 129
             +   S      R     L                           +      L + + 
Sbjct: 159 FEEGSHSVVSSELRYDCCFLW--------------------------VDVSVKVLTDYLA 192

Query: 130 RRFTQMLESGAIDEIRSLMKM-------NLSLDLPIMKAIGVRDIIALLKG--------- 173
           +R   MLE G  DE+             + +    + KAIGV +     +          
Sbjct: 193 KRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGE 252

Query: 174 --------EINYDETLQRGIIATNKYAKRQKTWLCHQFQADW 207
                      ++E ++     T   AKRQ   +     A W
Sbjct: 253 DPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGW 294


>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis,
           plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens}
           PDB: 2ze5_A* 2ze7_A* 2ze8_A
          Length = 253

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 18/165 (10%), Positives = 38/165 (23%), Gaps = 30/165 (18%)

Query: 9   YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68
            K     I+ GG+      +             ++         +        L+     
Sbjct: 87  RKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAF--------LTRAKQR 138

Query: 69  VARQIHPSDGQRIARALEIKLVSG--------------QSIIEFWKQAPNPFIPLESAHK 114
           VA      + +  +   E+  +                +  I F ++       L +   
Sbjct: 139 VAEMFAIREDRP-SLLEELAELWNYPAARPILEDIDGYRCAIRFARKHDLAISQLPNIDA 197

Query: 115 ------IIILPERSALKERI-RRRFTQMLESGAIDEIRSLMKMNL 152
                 I  +            R F Q  E GA   +  +    +
Sbjct: 198 GRHVELIEAIANEYLEHALSQERDFPQWPEDGAGQPVCPVTLTRI 242


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 53/133 (39%)

Query: 3   SKKLQRYKKRFLPI--------------------------IVGG----------TGLYFR 26
           S++  ++  RFLP+                                         G   R
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469

Query: 27  ALTGQLSIMPEIPTAI-REKIR-EKLKQYG-SHILHD----ELSSLDSIVARQIHPSDGQ 79
            L+G  SI   I   I R  ++ E   Q+  +HIL D      S L  +  R     DG 
Sbjct: 470 VLSG--SISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHRN---KDGT 523

Query: 80  --RI--ARALEIK 88
             R+  A  L+I 
Sbjct: 524 GVRVIVAGTLDIN 536



 Score = 30.7 bits (69), Expect = 0.27
 Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 102/201 (50%)

Query: 14  LPIIVGGTGL-----YFRALTGQ-LSIMPEIPTAIREKIREKLKQYGS--HILHDELSSL 65
            P+I    G+     Y   +T + L   P       E +R  LK  G+  H         
Sbjct: 238 CPLI----GVIQLAHY--VVTAKLLGFTP------GE-LRSYLK--GATGH--------- 273

Query: 66  DS---IVARQIHPSDG----QRIAR-ALEIKLVSGQSIIEFW-----KQA-PNPFIPLES 111
            S   + A  I  +D         R A+ + L        F+      +A PN  +P   
Sbjct: 274 -SQGLVTAVAIAETDSWESFFVSVRKAITV-L--------FFIGVRCYEAYPNTSLP--- 320

Query: 112 AHKIIILPERSALKERIRRRFTQMLESGAIDEIR-SLMKMNLSLDLPIMKAIGVRDIIAL 170
                  P  S L++ +        E+    E   S M   LS          + +   L
Sbjct: 321 -------P--SILEDSL--------ENN---EGVPSPM---LS----------ISN---L 344

Query: 171 LKGEINYDETLQRGIIATNKY 191
            +      E +Q  +  TN +
Sbjct: 345 TQ------EQVQDYVNKTNSH 359


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.25
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 25/48 (52%)

Query: 41 AIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIK 88
          A++ K++  LK Y      D     DS              A AL IK
Sbjct: 21 ALK-KLQASLKLYA-----D-----DS--------------APALAIK 43



 Score = 28.8 bits (63), Expect = 1.1
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 9/29 (31%)

Query: 143 EIRSLMKMNLSLDL------PIMKAIGVR 165
           E ++L K+  SL L      P   A+ ++
Sbjct: 18  EKQALKKLQASLKLYADDSAP---ALAIK 43


>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
           aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
           2.20A {Pseudomonas aeruginosa} PDB: 3cum_A
          Length = 302

 Score = 30.5 bits (68), Expect = 0.34
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 2   LSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
           +    +      L   V G      A  G L+ M        EK R   +  G +I H
Sbjct: 107 IHAAARERGLAMLDAPVSGG--TAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH 162


>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
           enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
          Length = 301

 Score = 29.0 bits (64), Expect = 0.84
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 2   LSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
           ++K        ++   V G      A  G L+IM     A+ EKI+  L   G  I H
Sbjct: 108 MAKVAAEKGIDYVDAPVSGG--TKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYH 163


>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate
           binding, plant cell WALL degradation, hydrolase,
           cellulases; 1.80A {Cellvibrio japonicus}
          Length = 347

 Score = 28.3 bits (62), Expect = 1.5
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 34  IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSD-GQR-IARAL 85
           +  +   A+   I E  +Q  S+ +    SS         HP+      +AR L
Sbjct: 276 LNGDKKAALVSYIGETRQQLHSNRVFYASSSHHPGDNSDAHPTKDQHAAMAREL 329


>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system,
           thermophilic bacterium, transport protein; HET: LYS;
           1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A*
           2q2c_A*
          Length = 272

 Score = 27.7 bits (60), Expect = 1.8
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 108 PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
              S +  +I P+ S LK ++      ++ SG   EI
Sbjct: 220 NFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEI 256


>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural
           genomics, PSI-2, protein structure initiative; HET: EPE;
           1.66A {Pseudomonas aeruginosa}
          Length = 239

 Score = 27.9 bits (60), Expect = 1.9
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
           P  P + A K  +LP   A K  + +      +SG + + 
Sbjct: 192 PQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQR 231


>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
           oxidoreductase, monooxygenase, sterol biosynthesis,
           lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
           {Trypanosoma brucei} PDB: 3g1q_A* 2wv2_A* 3khm_A*
           3k1o_A* 2wx2_A* 2wuz_A*
          Length = 450

 Score = 27.8 bits (60), Expect = 2.2
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 78  GQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRR 131
           GQ+    L++K +   +   +  Q     +P    H +++ P  S  + +  RR
Sbjct: 397 GQKFGL-LQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYIRR 449


>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial
           agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane
           protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP:
           c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A*
           1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A*
           1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A
           1my0_A ...
          Length = 263

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 46  IREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIK----LVSGQSIIEFWKQ 101
            +E  ++    +     + + S        +  + +AR  + K     +   ++ E+ +Q
Sbjct: 143 TKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQ 202

Query: 102 APNPFI-----PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
                       L+S    I  P+ S+L   +     ++ E G +D++
Sbjct: 203 RKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKL 250


>1yb4_A Tartronic semialdehyde reductase; structural genomics,
           oxidoreductase, PSI, protein structure initiative; 2.40A
           {Salmonella typhimurium LT2}
          Length = 295

 Score = 26.7 bits (58), Expect = 4.1
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 2   LSKKLQRYKKRFL--PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59
            ++++      +L  P+  GG      A  G LSIM      + ++++      G +I  
Sbjct: 106 FAQRVNEMGADYLDAPV-SGGEI---GAREGTLSIMVGGEQKVFDRVKPLFDILGKNITL 161


>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand
           binding domain, transport protein; HET: GLU; 2.10A
           {Nostoc punctiforme pcc 73102}
          Length = 228

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 108 PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
            L      IILP  S  ++ I +    + E+G    +
Sbjct: 180 ILREESYGIILPNNSPYRKPINQALLNLKENGTYQSL 216


>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown
           function, PSI-2, protein structure initiative; 2.00A
           {Coxiella burnetii}
          Length = 393

 Score = 26.1 bits (57), Expect = 6.7
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 103 PNPFIPLESAHKIIILPERSALKERIRRRF 132
           P   +P+ SA  ++       L ++I    
Sbjct: 11  PGMLVPVFSAAGLLKNGRYQFLLQQIETLS 40


>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein;
           structural genomics, transporter, PSI-2, protein
           structure initiative; HET: LYS; 2.00A {Silicibacter
           pomeroyi}
          Length = 232

 Score = 26.0 bits (56), Expect = 6.9
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
             +PL     + +      L+ +     T M E G ++ +
Sbjct: 172 DDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTM 211


>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine
           transport system, protein structure initiative II(PSI
           II); 2.06A {Legionella pneumophila subsp}
          Length = 237

 Score = 26.0 bits (56), Expect = 7.2
 Identities = 8/50 (16%), Positives = 20/50 (40%)

Query: 95  IIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144
           +I    +     I +   + I+  P++  L ++I +   +M   G    +
Sbjct: 175 LIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRL 224


>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
           ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
          Length = 169

 Score = 26.0 bits (56), Expect = 7.3
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 38  IPTAIREKIREKLKQYGS 55
           +P  +   +++K +Q GS
Sbjct: 146 VPPEVELALQQKFRQGGS 163


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,989,801
Number of extensions: 96502
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 33
Length of query: 217
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 128
Effective length of database: 3,535,514
Effective search space: 452545792
Effective search space used: 452545792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)