RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.888_1 (217 letters) >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316 Score = 150 bits (380), Expect = 2e-37 Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 2/209 (0%) Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68 +P++VGGT LYF+AL LS +P +R +I ++ + G LH +L +D + Sbjct: 96 TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPV 155 Query: 69 VARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERI 128 A +IHP+D QR++RALE+ +SG+++ E Q +P + I R L +RI Sbjct: 156 AAARIHPNDPQRLSRALEVFFISGKTLTE-LTQTSGDALPYQVHQFAIAPASRELLHQRI 214 Query: 129 RRRFTQMLESGAIDEIRSLM-KMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIA 187 +RF QML SG E+R+L + +L DLP ++ +G R + + L+GEI+YDE + RG+ A Sbjct: 215 EQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCA 274 Query: 188 TNKYAKRQKTWLCHQFQADWIRISSIDDL 216 T + AKRQ TWL W+ + Sbjct: 275 TRQLAKRQITWLRGWEGVHWLDSEKPEQA 303 >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323 Score = 124 bits (313), Expect = 1e-29 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 11/213 (5%) Query: 15 PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIH 74 P++VGGT LY++AL L+ MP +R I + + G LH +L+ +D A +IH Sbjct: 97 PLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIH 156 Query: 75 PSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHK----------IIILPERSAL 124 P+D QR+ RALE+ + G S+ + ++ +++ + I +R L Sbjct: 157 PNDPQRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVL 216 Query: 125 KERIRRRFTQMLESGAIDEIRSLMKMNL-SLDLPIMKAIGVRDIIALLKGEINYDETLQR 183 RI +RF QMLE G I E+ +L + LP ++A+G R + L G+++Y E +R Sbjct: 217 HARIAQRFRQMLEQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTER 276 Query: 184 GIIATNKYAKRQKTWLCHQFQADWIRISSIDDL 216 GIIAT + AKRQ TWL W+ + D+L Sbjct: 277 GIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNL 309 >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340 Score = 119 bits (298), Expect = 7e-28 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 7/212 (3%) Query: 7 QRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQY----GSHILHDEL 62 ++ +PII GGTGLY ++L + E + + K + + ++ LH+ L Sbjct: 91 DITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYL 150 Query: 63 SSLDSIVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERS 122 +S D A+ IHP++ +R+ RA+E L + + + ++ F I I R Sbjct: 151 ASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLL--SSRKKVQQFTENYDTLLIGIEMSRE 208 Query: 123 ALKERIRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQ 182 L RI +R ML G +E++ L++ M+AIG ++++ ++KG I+ + ++ Sbjct: 209 TLYLRINKRVDIMLGHGLFNEVQHLVEQGFEAS-QSMQAIGYKELVPVIKGNISMENAVE 267 Query: 183 RGIIATNKYAKRQKTWLCHQFQADWIRISSID 214 + + +YAKRQ TW ++ W+ + Sbjct: 268 KLKQHSRQYAKRQLTWFKNKMNVHWLNKERMS 299 >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322 Score = 105 bits (263), Expect = 8e-24 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 3/207 (1%) Query: 9 YKKRFLPIIVGGTGLYFRALT-GQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDS 67 +++ LP +VGGTGLY A+ R ++ + YG LHD+LS +D Sbjct: 89 HERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDP 148 Query: 68 IVARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKER 127 A IHP++ +R+ RALEI ++G+++ E + P I + ER L +R Sbjct: 149 KAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEEETPSPYNL-VMIGLTMERDVLYDR 207 Query: 128 IRRRFTQMLESGAIDEIRSLMKMNLSLDLPIMKAIGVRDIIALLKGEINYDETLQRGIIA 187 I RR QM+E G IDE + L + ++AIG +++ L G + +E + Sbjct: 208 INRRVDQMVEEGLIDEAKKLYDRGIRDC-QSVQAIGYKEMYDYLDGNVTLEEAIDTLKRN 266 Query: 188 TNKYAKRQKTWLCHQFQADWIRISSID 214 + +YAKRQ TW ++ W ++ +D Sbjct: 267 SRRYAKRQLTWFRNKANVTWFDMTDVD 293 >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409 Score = 82.6 bits (203), Expect = 7e-17 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 14/205 (6%) Query: 15 PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIH 74 PI+VGGT Y + L + + K + L+ ++++ L D +A + H Sbjct: 94 PIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYH 153 Query: 75 PSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQ 134 P+D +R+ R LEI +G+ E + + + + + L +R+ R Sbjct: 154 PNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKF--DTLFLWLYSKPEPLFQRLDDRVDD 211 Query: 135 MLESGAIDEIRSLMKMNL-------SLDLPIMKAIGVRDIIALLKGE-----INYDETLQ 182 MLE GA+ EI+ L + + + + IG ++ + L G+ + ++ ++ Sbjct: 212 MLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIE 271 Query: 183 RGIIATNKYAKRQKTWLCHQFQADW 207 R T +YAKRQ W+ D Sbjct: 272 RMKTRTRQYAKRQVKWIKKMLIPDI 296 >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339 Score = 80.6 bits (198), Expect = 3e-16 Identities = 36/222 (16%), Positives = 57/222 (25%), Gaps = 79/222 (35%) Query: 10 KKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIV 69 +R LP++VGG+ + AL L D S V Sbjct: 128 GRRKLPVLVGGSNSFIHAL-----------------------------LVDRFDSSGPGV 158 Query: 70 ARQIHPSDGQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIR 129 + S R L + L + + Sbjct: 159 FEEGSHSVVSSELRYDCCFLW--------------------------VDVSVKVLTDYLA 192 Query: 130 RRFTQMLESGAIDEIRSLMKM-------NLSLDLPIMKAIGVRDIIALLKG--------- 173 +R MLE G DE+ + + + KAIGV + + Sbjct: 193 KRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGE 252 Query: 174 --------EINYDETLQRGIIATNKYAKRQKTWLCHQFQADW 207 ++E ++ T AKRQ + A W Sbjct: 253 DPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGW 294 >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253 Score = 66.1 bits (161), Expect = 6e-12 Identities = 18/165 (10%), Positives = 38/165 (23%), Gaps = 30/165 (18%) Query: 9 YKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSI 68 K I+ GG+ + ++ + L+ Sbjct: 87 RKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAF--------LTRAKQR 138 Query: 69 VARQIHPSDGQRIARALEIKLVSG--------------QSIIEFWKQAPNPFIPLESAHK 114 VA + + + E+ + + I F ++ L + Sbjct: 139 VAEMFAIREDRP-SLLEELAELWNYPAARPILEDIDGYRCAIRFARKHDLAISQLPNIDA 197 Query: 115 ------IIILPERSALKERI-RRRFTQMLESGAIDEIRSLMKMNL 152 I + R F Q E GA + + + Sbjct: 198 GRHVELIEAIANEYLEHALSQERDFPQWPEDGAGQPVCPVTLTRI 242 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.2 bits (91), Expect = 7e-04 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 53/133 (39%) Query: 3 SKKLQRYKKRFLPI--------------------------IVGG----------TGLYFR 26 S++ ++ RFLP+ G R Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469 Query: 27 ALTGQLSIMPEIPTAI-REKIR-EKLKQYG-SHILHD----ELSSLDSIVARQIHPSDGQ 79 L+G SI I I R ++ E Q+ +HIL D S L + R DG Sbjct: 470 VLSG--SISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHRN---KDGT 523 Query: 80 --RI--ARALEIK 88 R+ A L+I Sbjct: 524 GVRVIVAGTLDIN 536 Score = 30.7 bits (69), Expect = 0.27 Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 102/201 (50%) Query: 14 LPIIVGGTGL-----YFRALTGQ-LSIMPEIPTAIREKIREKLKQYGS--HILHDELSSL 65 P+I G+ Y +T + L P E +R LK G+ H Sbjct: 238 CPLI----GVIQLAHY--VVTAKLLGFTP------GE-LRSYLK--GATGH--------- 273 Query: 66 DS---IVARQIHPSDG----QRIAR-ALEIKLVSGQSIIEFW-----KQA-PNPFIPLES 111 S + A I +D R A+ + L F+ +A PN +P Sbjct: 274 -SQGLVTAVAIAETDSWESFFVSVRKAITV-L--------FFIGVRCYEAYPNTSLP--- 320 Query: 112 AHKIIILPERSALKERIRRRFTQMLESGAIDEIR-SLMKMNLSLDLPIMKAIGVRDIIAL 170 P S L++ + E+ E S M LS + + L Sbjct: 321 -------P--SILEDSL--------ENN---EGVPSPM---LS----------ISN---L 344 Query: 171 LKGEINYDETLQRGIIATNKY 191 + E +Q + TN + Sbjct: 345 TQ------EQVQDYVNKTNSH 359 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.25 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 25/48 (52%) Query: 41 AIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIK 88 A++ K++ LK Y D DS A AL IK Sbjct: 21 ALK-KLQASLKLYA-----D-----DS--------------APALAIK 43 Score = 28.8 bits (63), Expect = 1.1 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 9/29 (31%) Query: 143 EIRSLMKMNLSLDL------PIMKAIGVR 165 E ++L K+ SL L P A+ ++ Sbjct: 18 EKQALKKLQASLKLYADDSAP---ALAIK 43 >2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A Length = 302 Score = 30.5 bits (68), Expect = 0.34 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%) Query: 2 LSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59 + + L V G A G L+ M EK R + G +I H Sbjct: 107 IHAAARERGLAMLDAPVSGG--TAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH 162 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 Score = 29.0 bits (64), Expect = 0.84 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 2 LSKKLQRYKKRFLPIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59 ++K ++ V G A G L+IM A+ EKI+ L G I H Sbjct: 108 MAKVAAEKGIDYVDAPVSGG--TKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYH 163 >2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus} Length = 347 Score = 28.3 bits (62), Expect = 1.5 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 34 IMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHPSD-GQR-IARAL 85 + + A+ I E +Q S+ + SS HP+ +AR L Sbjct: 276 LNGDKKAALVSYIGETRQQLHSNRVFYASSSHHPGDNSDAHPTKDQHAAMAREL 329 >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 Score = 27.7 bits (60), Expect = 1.8 Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 108 PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144 S + +I P+ S LK ++ ++ SG EI Sbjct: 220 NFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEI 256 >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 Score = 27.9 bits (60), Expect = 1.9 Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144 P P + A K +LP A K + + +SG + + Sbjct: 192 PQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQR 231 >3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3g1q_A* 2wv2_A* 3khm_A* 3k1o_A* 2wx2_A* 2wuz_A* Length = 450 Score = 27.8 bits (60), Expect = 2.2 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 78 GQRIARALEIKLVSGQSIIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRR 131 GQ+ L++K + + + Q +P H +++ P S + + RR Sbjct: 397 GQKFGL-LQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYIRR 449 >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Score = 26.9 bits (58), Expect = 3.6 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 9/108 (8%) Query: 46 IREKLKQYGSHILHDELSSLDSIVARQIHPSDGQRIARALEIK----LVSGQSIIEFWKQ 101 +E ++ + + + S + + +AR + K + ++ E+ +Q Sbjct: 143 TKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQ 202 Query: 102 APNPFI-----PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144 L+S I P+ S+L + ++ E G +D++ Sbjct: 203 RKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKL 250 >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, PSI, protein structure initiative; 2.40A {Salmonella typhimurium LT2} Length = 295 Score = 26.7 bits (58), Expect = 4.1 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 2 LSKKLQRYKKRFL--PIIVGGTGLYFRALTGQLSIMPEIPTAIREKIREKLKQYGSHILH 59 ++++ +L P+ GG A G LSIM + ++++ G +I Sbjct: 106 FAQRVNEMGADYLDAPV-SGGEI---GAREGTLSIMVGGEQKVFDRVKPLFDILGKNITL 161 >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102} Length = 228 Score = 26.2 bits (56), Expect = 5.4 Identities = 9/37 (24%), Positives = 15/37 (40%) Query: 108 PLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144 L IILP S ++ I + + E+G + Sbjct: 180 ILREESYGIILPNNSPYRKPINQALLNLKENGTYQSL 216 >3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Coxiella burnetii} Length = 393 Score = 26.1 bits (57), Expect = 6.7 Identities = 6/30 (20%), Positives = 12/30 (40%) Query: 103 PNPFIPLESAHKIIILPERSALKERIRRRF 132 P +P+ SA ++ L ++I Sbjct: 11 PGMLVPVFSAAGLLKNGRYQFLLQQIETLS 40 >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232 Score = 26.0 bits (56), Expect = 6.9 Identities = 7/40 (17%), Positives = 15/40 (37%) Query: 105 PFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144 +PL + + L+ + T M E G ++ + Sbjct: 172 DDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTM 211 >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237 Score = 26.0 bits (56), Expect = 7.2 Identities = 8/50 (16%), Positives = 20/50 (40%) Query: 95 IIEFWKQAPNPFIPLESAHKIIILPERSALKERIRRRFTQMLESGAIDEI 144 +I + I + + I+ P++ L ++I + +M G + Sbjct: 175 LIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRL 224 >1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Length = 169 Score = 26.0 bits (56), Expect = 7.3 Identities = 5/18 (27%), Positives = 11/18 (61%) Query: 38 IPTAIREKIREKLKQYGS 55 +P + +++K +Q GS Sbjct: 146 VPPEVELALQQKFRQGGS 163 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.139 0.399 Gapped Lambda K H 0.267 0.0451 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,989,801 Number of extensions: 96502 Number of successful extensions: 428 Number of sequences better than 10.0: 1 Number of HSP's gapped: 415 Number of HSP's successfully gapped: 33 Length of query: 217 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 128 Effective length of database: 3,535,514 Effective search space: 452545792 Effective search space used: 452545792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.7 bits)