Query         537021.9.peg.889_1
Match_columns 42
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 01:45:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_889.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1uj2_A Uridine-cytidine kinase   4.8 1.3E+02  0.0054   13.1   0.0   16   19-34    236-251 (252)
  2 3cjl_A Domain of unknown funct   4.6 1.8E+02  0.0074   12.5   0.6   13   13-25     60-72  (88)
  3 2k21_A Potassium voltage-gated   3.7 2.3E+02  0.0096   11.9   0.6   16   16-31     98-113 (138)
  4 2i6h_A AGR_C_189P, hypothetica   3.4   2E+02  0.0084   12.2   0.1   16   20-35    126-141 (207)
  5 2fot_C Alpha-II spectrin spect   2.8 3.2E+02   0.014   11.2   1.6   15    5-19     28-42  (42)
  6 1wi9_A Protein C20ORF116 homol   2.7 3.3E+02   0.014   11.1   0.6   11   12-22     12-22  (72)
  7 2v1y_A Phosphatidylinositol-4,   2.7      65  0.0027   14.6  -3.1   12   18-29     53-64  (108)
  8 3e20_C Eukaryotic peptide chai   2.6   3E+02   0.012   11.4   0.2   21    8-28      7-27  (441)
  9 2wuj_A Septum site-determining   2.4      90  0.0038   13.9  -2.7   24    9-34      1-24  (57)
 10 2izv_A Suppressor of cytokine    2.4 3.7E+02   0.015   10.9   0.8    6   32-37    138-143 (187)

No 1  
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=4.82  E-value=1.3e+02  Score=13.15  Aligned_cols=16  Identities=31%  Similarity=0.495  Sum_probs=11.2

Q ss_pred             CCCHHHHHHHHHCCHH
Q ss_conf             4143999984330089
Q 537021.9.peg.8   19 RKYPLKRLLEGYMPLQ   34 (42)
Q Consensus        19 rkyplkrllegymplq   34 (42)
                      -+.+..+.+.||||-.
T Consensus       236 ~~~~~~~~~~~~~~~~  251 (252)
T 1uj2_A          236 SKRQTNGCLNGYTPSR  251 (252)
T ss_dssp             ----------------
T ss_pred             CCCHHCCCCCCCCCCC
T ss_conf             4001010112458788


No 2  
>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=4.64  E-value=1.8e+02  Score=12.47  Aligned_cols=13  Identities=31%  Similarity=0.411  Sum_probs=8.9

Q ss_pred             HHHHHCCCCHHHH
Q ss_conf             9864224143999
Q 537021.9.peg.8   13 VNHIKNRKYPLKR   25 (42)
Q Consensus        13 vnhiknrkyplkr   25 (42)
                      ---++|||.||=.
T Consensus        60 evMl~~R~~PLF~   72 (88)
T 3cjl_A           60 EVMMQQRKHPLFK   72 (88)
T ss_dssp             HHHHHTTTSHHHH
T ss_pred             HHHHHCCCCCCHH
T ss_conf             9998657884078


No 3  
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.74  E-value=2.3e+02  Score=11.91  Aligned_cols=16  Identities=38%  Similarity=0.623  Sum_probs=11.5

Q ss_pred             HHCCCCHHHHHHHHHC
Q ss_conf             4224143999984330
Q 537021.9.peg.8   16 IKNRKYPLKRLLEGYM   31 (42)
Q Consensus        16 iknrkyplkrllegym   31 (42)
                      -|+|.|-..|+||.|-
T Consensus        98 ~K~k~~~q~r~le~~k  113 (138)
T 2k21_A           98 EKDKAYVQARVLESYK  113 (138)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             8779999998752566


No 4  
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5
Probab=3.42  E-value=2e+02  Score=12.19  Aligned_cols=16  Identities=19%  Similarity=0.237  Sum_probs=9.5

Q ss_pred             CCHHHHHHHHHCCHHH
Q ss_conf             1439999843300898
Q 537021.9.peg.8   20 KYPLKRLLEGYMPLQH   35 (42)
Q Consensus        20 kyplkrllegymplqh   35 (42)
                      +++.-.-.=-||||.|
T Consensus       126 ~l~~~~r~F~ymPlmH  141 (207)
T 2i6h_A          126 AVSEDLRVFFYLPFSH  141 (207)
T ss_dssp             HSCHHHHGGGTHHHHT
T ss_pred             CCCHHHHHHHCCCHHH
T ss_conf             2479999986672210


No 5  
>2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens}
Probab=2.81  E-value=3.2e+02  Score=11.17  Aligned_cols=15  Identities=47%  Similarity=0.689  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999999999864224
Q 537021.9.peg.8    5 YLVHMMLTVNHIKNR   19 (42)
Q Consensus         5 ylvhmmltvnhiknr   19 (42)
                      ..|+-.-+.|.||.|
T Consensus        28 lav~t~a~fnsik~r   42 (42)
T 2fot_C           28 LMVHTVATFNSIKER   42 (42)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             999987402301149


No 6  
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=2.73  E-value=3.3e+02  Score=11.13  Aligned_cols=11  Identities=36%  Similarity=0.322  Sum_probs=8.0

Q ss_pred             HHHHHHCCCCH
Q ss_conf             99864224143
Q 537021.9.peg.8   12 TVNHIKNRKYP   22 (42)
Q Consensus        12 tvnhiknrkyp   22 (42)
                      -+|+||.+|.-
T Consensus        12 FI~~Ik~~Kvv   22 (72)
T 1wi9_A           12 FINYIKKSKVV   22 (72)
T ss_dssp             HHHHHHHCSEE
T ss_pred             HHHHHHHCCEE
T ss_conf             99999987876


No 7  
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogenic mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=2.67  E-value=65  Score=14.58  Aligned_cols=12  Identities=58%  Similarity=1.079  Sum_probs=7.5

Q ss_pred             CCCCHHHHHHHH
Q ss_conf             241439999843
Q 537021.9.peg.8   18 NRKYPLKRLLEG   29 (42)
Q Consensus        18 nrkyplkrlleg   29 (42)
                      .++|||..+|..
T Consensus        53 A~~~PL~~~L~d   64 (108)
T 2v1y_A           53 ARKYPLHQLLQD   64 (108)
T ss_dssp             GGGSTTGGGCCC
T ss_pred             HHHCCHHHHHCC
T ss_conf             986977887579


No 8  
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe}
Probab=2.57  E-value=3e+02  Score=11.35  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHH
Q ss_conf             999999864224143999984
Q 537021.9.peg.8    8 HMMLTVNHIKNRKYPLKRLLE   28 (42)
Q Consensus         8 hmmltvnhiknrkyplkrlle   28 (42)
                      |||-....-.-.+|-+|++++
T Consensus         7 ~~m~~~~~~~~~~~~~k~~l~   27 (441)
T 3e20_C            7 HMMSETAEKAIEIWKIRRLVK   27 (441)
T ss_dssp             -----CHHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHH
T ss_conf             440312788999999999999


No 9  
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=2.42  E-value=90  Score=13.90  Aligned_cols=24  Identities=33%  Similarity=0.539  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf             99999864224143999984330089
Q 537021.9.peg.8    9 MMLTVNHIKNRKYPLKRLLEGYMPLQ   34 (42)
Q Consensus         9 mmltvnhiknrkyplkrllegymplq   34 (42)
                      |-||..-|.|..+  ++-+.||-|-+
T Consensus         1 M~lTp~dI~~k~F--~~~~rGY~~~E   24 (57)
T 2wuj_A            1 MPLTPNDIHNKTF--TKSFRGYDEDE   24 (57)
T ss_dssp             --CCHHHHTTCCC--CEETTEEEHHH
T ss_pred             CCCCHHHHHHCCC--CCCCCCCCHHH
T ss_conf             9999999965737--78779989999


No 10 
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=2.40  E-value=3.7e+02  Score=10.90  Aligned_cols=6  Identities=67%  Similarity=1.503  Sum_probs=0.0

Q ss_pred             CHHHHH
Q ss_conf             089885
Q 537021.9.peg.8   32 PLQHMC   37 (42)
Q Consensus        32 plqhmc   37 (42)
                      .|||+|
T Consensus       138 sLqhLc  143 (187)
T 2izv_A          138 SLQHIC  143 (187)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
T ss_conf             477773


Done!