Query 537021.9.peg.889_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 01:45:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_889.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1uj2_A Uridine-cytidine kinase 4.8 1.3E+02 0.0054 13.1 0.0 16 19-34 236-251 (252) 2 3cjl_A Domain of unknown funct 4.6 1.8E+02 0.0074 12.5 0.6 13 13-25 60-72 (88) 3 2k21_A Potassium voltage-gated 3.7 2.3E+02 0.0096 11.9 0.6 16 16-31 98-113 (138) 4 2i6h_A AGR_C_189P, hypothetica 3.4 2E+02 0.0084 12.2 0.1 16 20-35 126-141 (207) 5 2fot_C Alpha-II spectrin spect 2.8 3.2E+02 0.014 11.2 1.6 15 5-19 28-42 (42) 6 1wi9_A Protein C20ORF116 homol 2.7 3.3E+02 0.014 11.1 0.6 11 12-22 12-22 (72) 7 2v1y_A Phosphatidylinositol-4, 2.7 65 0.0027 14.6 -3.1 12 18-29 53-64 (108) 8 3e20_C Eukaryotic peptide chai 2.6 3E+02 0.012 11.4 0.2 21 8-28 7-27 (441) 9 2wuj_A Septum site-determining 2.4 90 0.0038 13.9 -2.7 24 9-34 1-24 (57) 10 2izv_A Suppressor of cytokine 2.4 3.7E+02 0.015 10.9 0.8 6 32-37 138-143 (187) No 1 >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Probab=4.82 E-value=1.3e+02 Score=13.15 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=11.2 Q ss_pred CCCHHHHHHHHHCCHH Q ss_conf 4143999984330089 Q 537021.9.peg.8 19 RKYPLKRLLEGYMPLQ 34 (42) Q Consensus 19 rkyplkrllegymplq 34 (42) -+.+..+.+.||||-. T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (252) T 1uj2_A 236 SKRQTNGCLNGYTPSR 251 (252) T ss_dssp ---------------- T ss_pred CCCHHCCCCCCCCCCC T ss_conf 4001010112458788 No 2 >3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043} Probab=4.64 E-value=1.8e+02 Score=12.47 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=8.9 Q ss_pred HHHHHCCCCHHHH Q ss_conf 9864224143999 Q 537021.9.peg.8 13 VNHIKNRKYPLKR 25 (42) Q Consensus 13 vnhiknrkyplkr 25 (42) ---++|||.||=. T Consensus 60 evMl~~R~~PLF~ 72 (88) T 3cjl_A 60 EVMMQQRKHPLFK 72 (88) T ss_dssp HHHHHTTTSHHHH T ss_pred HHHHHCCCCCCHH T ss_conf 9998657884078 No 3 >2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} Probab=3.74 E-value=2.3e+02 Score=11.91 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=11.5 Q ss_pred HHCCCCHHHHHHHHHC Q ss_conf 4224143999984330 Q 537021.9.peg.8 16 IKNRKYPLKRLLEGYM 31 (42) Q Consensus 16 iknrkyplkrllegym 31 (42) -|+|.|-..|+||.|- T Consensus 98 ~K~k~~~q~r~le~~k 113 (138) T 2k21_A 98 EKDKAYVQARVLESYK 113 (138) T ss_dssp SCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCC T ss_conf 8779999998752566 No 4 >2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5 Probab=3.42 E-value=2e+02 Score=12.19 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=9.5 Q ss_pred CCHHHHHHHHHCCHHH Q ss_conf 1439999843300898 Q 537021.9.peg.8 20 KYPLKRLLEGYMPLQH 35 (42) Q Consensus 20 kyplkrllegymplqh 35 (42) +++.-.-.=-||||.| T Consensus 126 ~l~~~~r~F~ymPlmH 141 (207) T 2i6h_A 126 AVSEDLRVFFYLPFSH 141 (207) T ss_dssp HSCHHHHGGGTHHHHT T ss_pred CCCHHHHHHHCCCHHH T ss_conf 2479999986672210 No 5 >2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens} Probab=2.81 E-value=3.2e+02 Score=11.17 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999999999864224 Q 537021.9.peg.8 5 YLVHMMLTVNHIKNR 19 (42) Q Consensus 5 ylvhmmltvnhiknr 19 (42) ..|+-.-+.|.||.| T Consensus 28 lav~t~a~fnsik~r 42 (42) T 2fot_C 28 LMVHTVATFNSIKER 42 (42) T ss_dssp HHHHHHHHHHHHHHC T ss_pred HHHHHHHHCCCCCCC T ss_conf 999987402301149 No 6 >1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Probab=2.73 E-value=3.3e+02 Score=11.13 Aligned_cols=11 Identities=36% Similarity=0.322 Sum_probs=8.0 Q ss_pred HHHHHHCCCCH Q ss_conf 99864224143 Q 537021.9.peg.8 12 TVNHIKNRKYP 22 (42) Q Consensus 12 tvnhiknrkyp 22 (42) -+|+||.+|.- T Consensus 12 FI~~Ik~~Kvv 22 (72) T 1wi9_A 12 FINYIKKSKVV 22 (72) T ss_dssp HHHHHHHCSEE T ss_pred HHHHHHHCCEE T ss_conf 99999987876 No 7 >2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogenic mutations, HOST-virus interaction; 2.4A {Bos taurus} Probab=2.67 E-value=65 Score=14.58 Aligned_cols=12 Identities=58% Similarity=1.079 Sum_probs=7.5 Q ss_pred CCCCHHHHHHHH Q ss_conf 241439999843 Q 537021.9.peg.8 18 NRKYPLKRLLEG 29 (42) Q Consensus 18 nrkyplkrlleg 29 (42) .++|||..+|.. T Consensus 53 A~~~PL~~~L~d 64 (108) T 2v1y_A 53 ARKYPLHQLLQD 64 (108) T ss_dssp GGGSTTGGGCCC T ss_pred HHHCCHHHHHCC T ss_conf 986977887579 No 8 >3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe} Probab=2.57 E-value=3e+02 Score=11.35 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHH Q ss_conf 999999864224143999984 Q 537021.9.peg.8 8 HMMLTVNHIKNRKYPLKRLLE 28 (42) Q Consensus 8 hmmltvnhiknrkyplkrlle 28 (42) |||-....-.-.+|-+|++++ T Consensus 7 ~~m~~~~~~~~~~~~~k~~l~ 27 (441) T 3e20_C 7 HMMSETAEKAIEIWKIRRLVK 27 (441) T ss_dssp -----CHHHHHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHHHHHHH T ss_conf 440312788999999999999 No 9 >2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A Probab=2.42 E-value=90 Score=13.90 Aligned_cols=24 Identities=33% Similarity=0.539 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCCHH Q ss_conf 99999864224143999984330089 Q 537021.9.peg.8 9 MMLTVNHIKNRKYPLKRLLEGYMPLQ 34 (42) Q Consensus 9 mmltvnhiknrkyplkrllegymplq 34 (42) |-||..-|.|..+ ++-+.||-|-+ T Consensus 1 M~lTp~dI~~k~F--~~~~rGY~~~E 24 (57) T 2wuj_A 1 MPLTPNDIHNKTF--TKSFRGYDEDE 24 (57) T ss_dssp --CCHHHHTTCCC--CEETTEEEHHH T ss_pred CCCCHHHHHHCCC--CCCCCCCCHHH T ss_conf 9999999965737--78779989999 No 10 >2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Probab=2.40 E-value=3.7e+02 Score=10.90 Aligned_cols=6 Identities=67% Similarity=1.503 Sum_probs=0.0 Q ss_pred CHHHHH Q ss_conf 089885 Q 537021.9.peg.8 32 PLQHMC 37 (42) Q Consensus 32 plqhmc 37 (42) .|||+| T Consensus 138 sLqhLc 143 (187) T 2izv_A 138 SLQHIC 143 (187) T ss_dssp CHHHHH T ss_pred CHHHHH T ss_conf 477773 Done!