RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.889_1
         (42 letters)



>gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase.  Dethiobiotin synthase is
           involved in biotin biosynthesis and catalyses the
           reaction (CO2 + 7,8-diaminononanoate + ATP =
           dethiobiotin + phosphate + ADP). The enzyme binds ATP
           (see motif in first 12 residues of the SEED alignment)
           and requires magnesium as a co-factor.
          Length = 166

 Score = 23.9 bits (52), Expect = 9.3
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 8   HMMLTVNHIKNRKYPLK 24
           H +LTV H +     L 
Sbjct: 145 HTLLTVEHARQTGLTLA 161


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.333    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 672,373
Number of extensions: 22677
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.1 bits)