RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.889_1 (42 letters) >gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. Length = 166 Score = 23.9 bits (52), Expect = 9.3 Identities = 6/17 (35%), Positives = 8/17 (47%) Query: 8 HMMLTVNHIKNRKYPLK 24 H +LTV H + L Sbjct: 145 HTLLTVEHARQTGLTLA 161 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.333 0.144 0.459 Gapped Lambda K H 0.267 0.0705 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 672,373 Number of extensions: 22677 Number of successful extensions: 86 Number of sequences better than 10.0: 1 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 2 Length of query: 42 Length of database: 5,994,473 Length adjustment: 16 Effective length of query: 26 Effective length of database: 5,648,745 Effective search space: 146867370 Effective search space used: 146867370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 50 (23.1 bits)