Query 537021.9.peg.905_1
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 03:05:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_905.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wj8_A Nucleoprotein; RNA bin 49.2 21 0.00062 17.9 3.6 34 5-52 86-119 (227)
2 >2qfa_B Borealin; three-helica 25.3 58 0.0017 15.4 5.4 32 15-46 13-44 (62)
3 >2ooe_A Cleavage stimulation f 23.0 25 0.00073 17.5 0.4 34 14-47 8-41 (100)
4 >2pqc_A 3-phosphoshikimate 1-c 17.5 15 0.00043 18.7 -1.7 23 34-56 42-64 (67)
5 >2aqx_A Predicted: inositol 1, 14.5 82 0.0024 14.6 1.5 15 26-40 14-28 (55)
6 >1w2f_A Inositol-trisphosphate 12.2 87 0.0026 14.5 1.1 14 26-39 14-27 (56)
7 >1tlj_A Hypothetical UPF0130 p 12.0 1.2E+02 0.0037 13.6 4.4 46 7-52 153-201 (213)
8 >1u0j_A DNA replication protei 11.9 1.2E+02 0.0037 13.6 2.7 18 31-48 16-33 (63)
9 >3dwl_A Actin-related protein 11.8 91 0.0027 14.4 1.1 16 20-35 181-204 (219)
10 >2cto_A Novel protein; high mo 9.2 1.6E+02 0.0046 13.1 3.0 40 6-46 33-72 (93)
No 1
>>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} (A:27-253)
Probab=49.17 E-value=21 Score=17.86 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=26.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 122324313899999999999985999999999999899997555521
Q 537021.9.peg.9 5 DGLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKHKASL 52 (56)
Q Consensus 5 dglgvhgvdveyvkhiesimaslrkeeyekmkevrksynsflkhkasl 52 (56)
.-|..||++.+++..|| +|.||++...||.++.+
T Consensus 86 qvLdihgv~~~~~~eie--------------keARktm~~~lke~~~i 119 (227)
T 2wj8_A 86 EVLTLASLTTEIQINIE--------------IESRKSYKKMLKEMGEV 119 (227)
T ss_dssp EEECCSSSCHHHHHHHH--------------HHHHHHHHHHHHHHSSC
T ss_pred EEEEECCCCHHHHHHHH--------------HHHHHHHHHHHHHCCCC
T ss_conf 55430255536778888--------------99999999998741779
No 2
>>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} (B:)
Probab=25.34 E-value=58 Score=15.42 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985999999999999899997
Q 537021.9.peg.9 15 EYVKHIESIMASLRKEEYEKMKEVRKSYNSFL 46 (56)
Q Consensus 15 eyvkhiesimaslrkeeyekmkevrksynsfl 46 (56)
.+..+.+++++.++++--.-.++++.+||-.+
T Consensus 13 DFD~eV~~r~~~m~~~~~~l~k~i~~~y~iei 44 (62)
T 2qfa_B 13 DFDREVEIRIKQIESDRQNLLKEVDNLYNIEI 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999999999999882999
No 3
>>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} (A:118-217)
Probab=23.01 E-value=25 Score=17.48 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999859999999999998999975
Q 537021.9.peg.9 14 VEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLK 47 (56)
Q Consensus 14 veyvkhiesimaslrkeeyekmkevrksynsflk 47 (56)
.+|+..+.|.-+.-.-+|+.||..+||-|...+.
T Consensus 8 ~dYi~FLks~~~~~~~ee~qk~~~iRk~Yqrai~ 41 (100)
T 2ooe_A 8 VDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 41 (100)
T ss_dssp HHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999987654459987689999998776505
No 4
>>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* (A:1-10,A:389-445)
Probab=17.49 E-value=15 Score=18.73 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998999975555216429
Q 537021.9.peg.9 34 KMKEVRKSYNSFLKHKASLGIKV 56 (56)
Q Consensus 34 kmkevrksynsflkhkaslgikv 56 (56)
...-|.|||-.|+..-.+||.++
T Consensus 42 d~~~V~kSfP~F~~~l~~lG~~v 64 (67)
T 2pqc_A 42 DATMIATSFPEFMDLMAGLGAKI 64 (67)
T ss_dssp CCTTGGGTCTTHHHHHHHHTCEE
T ss_pred CCCEEECCCHHHHHHHHHCCCEE
T ss_conf 78168660460999999579889
No 5
>>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase B; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodulin binding, transferase; HET: ATP; 2.50A {Mus musculus} (A:98-152)
Probab=14.51 E-value=82 Score=14.61 Aligned_cols=15 Identities=60% Similarity=0.804 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 985999999999999
Q 537021.9.peg.9 26 SLRKEEYEKMKEVRK 40 (56)
Q Consensus 26 slrkeeyekmkevrk 40 (56)
.||+.-|+||-+|.-
T Consensus 14 ~lR~DlY~KMi~vDp 28 (55)
T 2aqx_A 14 SLRKDMYQKMVEVDP 28 (55)
T ss_dssp CCBHHHHHHHHHHCT
T ss_pred HCCCCHHHHHHCCCC
T ss_conf 102110100002465
No 6
>>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} (A:85-140)
Probab=12.18 E-value=87 Score=14.48 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 98599999999999
Q 537021.9.peg.9 26 SLRKEEYEKMKEVR 39 (56)
Q Consensus 26 slrkeeyekmkevr 39 (56)
+||+.-|+||-+|.
T Consensus 14 ~lR~DlY~KMi~vD 27 (56)
T 1w2f_A 14 KLRKDXYKKXLAVD 27 (56)
T ss_dssp CEEHHHHHHHHHHC
T ss_pred HHHCCCCCEEECCC
T ss_conf 32022102001125
No 7
>>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.80A {Sulfolobus solfataricus} (A:)
Probab=12.00 E-value=1.2e+02 Score=13.63 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=32.8
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23243---13899999999999985999999999999899997555521
Q 537021.9.peg.9 7 LGVHG---VDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKHKASL 52 (56)
Q Consensus 7 lgvhg---vdveyvkhiesimaslrkeeyekmkevrksynsflkhkasl 52 (56)
||..| |+-||.+.+-.+--..-.+..++|...+....+++.....+
T Consensus 153 l~~~g~~lV~~eyL~~Lv~~aN~kl~~n~~rl~rl~~~l~~~~~~~~~~ 201 (213)
T 1tlj_A 153 LRESNTERVDKDKIKTLVNVCNEVLARGKQKMNLLKDLLSSSSNNSMEL 201 (213)
T ss_dssp EESSTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5159966349999999999999999999999999999999873478646
No 8
>>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} (A:1-63)
Probab=11.85 E-value=1.2e+02 Score=13.60 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999989999755
Q 537021.9.peg.9 31 EYEKMKEVRKSYNSFLKH 48 (56)
Q Consensus 31 eyekmkevrksynsflkh 48 (56)
|-+-+.+-+.||-||+--
T Consensus 16 E~~W~~~~~~SY~SFl~t 33 (63)
T 1u0j_A 16 EKQWIQEDQASYISFNAA 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHCHHHHHHHCCC
T ss_conf 999986299999986437
No 9
>>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} (A:1-173,A:382-427)
Probab=11.76 E-value=91 Score=14.37 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=10.5
Q ss_pred HHHHHHHHH--------HHHHHHH
Q ss_conf 999999985--------9999999
Q 537021.9.peg.9 20 IESIMASLR--------KEEYEKM 35 (56)
Q Consensus 20 iesimaslr--------keeyekm 35 (56)
=-||+|||- |+|||.+
T Consensus 181 ggsil~~~~~f~~~~~~~~ey~e~ 204 (219)
T 3dwl_A 181 GGSLLAQTPEFGSYCHTKADYEEY 204 (219)
T ss_dssp HHHHHHHSTTHHHHSEEHHHHHHS
T ss_pred HHHHHHCCCCHHHHEECHHHHHHH
T ss_conf 789987684588716239998435
No 10
>>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=9.21 E-value=1.6e+02 Score=13.07 Aligned_cols=40 Identities=33% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22324313899999999999985999999999999899997
Q 537021.9.peg.9 6 GLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFL 46 (56)
Q Consensus 6 glgvhgvdveyvkhiesimaslrkeeyekmkevrksynsfl 46 (56)
||-|.+| ++-+-+...--|.|+.||-|+.-|.-..+|+--
T Consensus 33 GLpVarv-adaiP~cs~dWalL~eeeke~YAE~areW~a~q 72 (93)
T 2cto_A 33 GLPVARV-ADAIPYCSSDWALLREEEKEKYAEMAREWRAAQ 72 (93)
T ss_dssp TCCCSSH-HHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8853556-522430467888850899999999999988742
Done!