Query 537021.9.peg.905_1
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 02:17:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_905.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wl8_A Peroxisomal biogenesis 51.8 11 0.00048 18.5 3.4 40 13-52 11-53 (126)
2 2yvw_A UDP-N-acetylglucosamine 17.9 19 0.00079 17.3 -0.3 54 3-56 359-419 (425)
3 2qfa_B Borealin; three-helical 17.8 60 0.0025 14.5 5.4 32 15-46 13-44 (62)
4 3cry_A Gamma-glutamyl cyclotra 16.9 8.8 0.00037 19.1 -2.2 24 2-25 142-165 (188)
5 2wj8_A Nucleoprotein; RNA bind 15.6 68 0.0029 14.2 3.6 34 5-52 112-145 (391)
6 1ejd_A MURA, EPT, UDP-N-acetyl 14.2 27 0.0011 16.4 -0.3 55 2-56 352-413 (419)
7 2raw_B Borealin; cell cycle, d 9.4 1.1E+02 0.0046 13.1 5.4 32 15-46 9-40 (68)
8 2cto_A Novel protein; high mob 8.0 1.2E+02 0.0052 12.8 3.0 42 6-48 33-74 (93)
9 3gxs_A Phenylacetate-coenzyme 7.8 1.3E+02 0.0054 12.7 1.4 16 1-16 6-21 (109)
10 1jr5_A 10 kDa anti-sigma facto 7.0 1.4E+02 0.0058 12.5 2.5 37 12-48 3-39 (90)
No 1
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=51.78 E-value=11 Score=18.48 Aligned_cols=40 Identities=33% Similarity=0.594 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHH-HHHHC
Q ss_conf 3899999999999985-99-99999999998999975-55521
Q 537021.9.peg.9 13 DVEYVKHIESIMASLR-KE-EYEKMKEVRKSYNSFLK-HKASL 52 (56)
Q Consensus 13 dveyvkhiesimaslr-ke-eyekmkevrksynsflk-hkasl 52 (56)
|-..-+-+.++|-.|- || -||-|||.+..|-.+|. |+.++
T Consensus 11 d~~~~~~l~~Mm~qL~SKevLYePmKel~~kyP~WL~~n~~~l 53 (126)
T 2wl8_A 11 EGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESL 53 (126)
T ss_dssp ---CHHHHHHHHHHHTSHHHHHHHHHHHHTTHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHCCHHHHHCCCCC
T ss_conf 2039999999999970464524119999987619998676769
No 2
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5}
Probab=17.87 E-value=19 Score=17.29 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=31.2
Q ss_pred EECCC-CCCCCHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 77122-324313899999---99999998599---99999999998999975555216429
Q 537021.9.peg.9 3 IIDGL-GVHGVDVEYVKH---IESIMASLRKE---EYEKMKEVRKSYNSFLKHKASLGIKV 56 (56)
Q Consensus 3 iidgl-gvhgvdveyvkh---iesimaslrke---eyekmkevrksynsflkhkaslgikv 56 (56)
+|.|- ..+|..|..-.| .-..+|+|+-+ +-+...-|.|||..|.+.-.+||.++
T Consensus 359 ~I~G~~~l~g~~v~s~DHRiaMa~avaal~~~g~~~I~~~~~v~kSyP~F~~~l~~LGa~I 419 (425)
T 2yvw_A 359 YVEGVERLYGSEVYSTDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKLGADI 419 (425)
T ss_dssp EEECCSCCBCCEEECCCTTTTHHHHHHHHHSBSEEEEECTHHHHHHCSSHHHHHHHTTCCE
T ss_pred EEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCHHHHHHHHHCCCEE
T ss_conf 9989998717735688589999999999858993998674289797531999999679989
No 3
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=17.83 E-value=60 Score=14.53 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985999999999999899997
Q 537021.9.peg.9 15 EYVKHIESIMASLRKEEYEKMKEVRKSYNSFL 46 (56)
Q Consensus 15 eyvkhiesimaslrkeeyekmkevrksynsfl 46 (56)
.+..+.+.++..++++--.-.++++++||-.+
T Consensus 13 DFD~ev~~ri~~m~~~~~~l~k~~~~~y~iel 44 (62)
T 2qfa_B 13 DFDREVEIRIKQIESDRQNLLKEVDNLYNIEI 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999999999999997999
No 4
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=16.94 E-value=8.8 Score=19.09 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 677122324313899999999999
Q 537021.9.peg.9 2 IIIDGLGVHGVDVEYVKHIESIMA 25 (56)
Q Consensus 2 iiidglgvhgvdveyvkhiesima 25 (56)
+|+.|.+-||.+.+|+..+++++.
T Consensus 142 ~I~~Ga~~~Glp~~Y~~~L~~~~~ 165 (188)
T 3cry_A 142 IICMGAKENGLPLEYQEKLKAIEP 165 (188)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 999999987919999999984384
No 5
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long}
Probab=15.61 E-value=68 Score=14.22 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 122324313899999999999985999999999999899997555521
Q 537021.9.peg.9 5 DGLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKHKASL 52 (56)
Q Consensus 5 dglgvhgvdveyvkhiesimaslrkeeyekmkevrksynsflkhkasl 52 (56)
.-|..||++++.+..+| +|.||++...+|.++.+
T Consensus 112 qvLDIhgv~~~~~~evE--------------keARkt~~~~~k~~~~i 145 (391)
T 2wj8_A 112 EVLTLASLTTEIQINIE--------------IESRKSYKKMLKEMGEV 145 (391)
T ss_dssp EEECCSSSCHHHHHHHH--------------HHHHHHHHHHHHHHSSC
T ss_pred EEEEECCCCHHHHHHHH--------------HHHHHHHHHHHHHCCCC
T ss_conf 65430144235678878--------------99999999998742779
No 6
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A*
Probab=14.15 E-value=27 Score=16.44 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=33.6
Q ss_pred EEECCC-CCCCCHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 677122-3243138999999---9999998599---99999999998999975555216429
Q 537021.9.peg.9 2 IIIDGL-GVHGVDVEYVKHI---ESIMASLRKE---EYEKMKEVRKSYNSFLKHKASLGIKV 56 (56)
Q Consensus 2 iiidgl-gvhgvdveyvkhi---esimaslrke---eyekmkevrksynsflkhkaslgikv 56 (56)
++|.|- ..+|.+++.-.|- --.+|+|+-+ ..+...-|.|||..|+..-.+||.+|
T Consensus 352 l~I~G~~~l~g~~v~s~DHRiaMa~ava~l~~~g~~~I~~~~~v~kSyP~F~~~l~~LGa~I 413 (419)
T 1ejd_A 352 VICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANI 413 (419)
T ss_dssp EEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSSSHHHHHHTTTCEE
T ss_pred EEEECCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHHHHHHCCCEE
T ss_conf 99989997738727138089999999999839993998471389786424899999669899
No 7
>2raw_B Borealin; cell cycle, dasrab, chromosomal passender complex, IAP, BIR, alternative splicing, apoptosis, cell division, centromere; 2.40A {Homo sapiens} PDB: 2rax_B
Probab=9.35 E-value=1.1e+02 Score=13.10 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985999999999999899997
Q 537021.9.peg.9 15 EYVKHIESIMASLRKEEYEKMKEVRKSYNSFL 46 (56)
Q Consensus 15 eyvkhiesimaslrkeeyekmkevrksynsfl 46 (56)
++..+.+.++..++++--.-.++++++||-.+
T Consensus 9 DFD~eVe~ri~em~~~~e~l~~~i~~~y~iEl 40 (68)
T 2raw_B 9 DFDREVEIRIKQIESDRQNLLKEVDNLYNIEI 40 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999
No 8
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.01 E-value=1.2e+02 Score=12.78 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2232431389999999999998599999999999989999755
Q 537021.9.peg.9 6 GLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKH 48 (56)
Q Consensus 6 glgvhgvdveyvkhiesimaslrkeeyekmkevrksynsflkh 48 (56)
||-|.+| ++-+-+...--|.|+.||-|+..|.-..+|+---.
T Consensus 33 GLpVarv-adaiP~cs~dWalL~eeeke~YAE~Ar~W~a~qgk 74 (93)
T 2cto_A 33 GLPVARV-ADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGK 74 (93)
T ss_dssp TCCCSSH-HHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8851434-41354135788886389999999999988775067
No 9
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=7.76 E-value=1.3e+02 Score=12.71 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=9.9
Q ss_pred CEEECCCCCCCCHHHH
Q ss_conf 9677122324313899
Q 537021.9.peg.9 1 MIIIDGLGVHGVDVEY 16 (56)
Q Consensus 1 miiidglgvhgvdvey 16 (56)
|||+.|.-++--++|.
T Consensus 6 miiv~G~NvyP~eIE~ 21 (109)
T 3gxs_A 6 MIILKGVNIFPIQIET 21 (109)
T ss_dssp CEEETTEEECHHHHHH
T ss_pred EEEECCEEECHHHHHH
T ss_conf 9999999999999999
No 10
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=7.03 E-value=1.4e+02 Score=12.51 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1389999999999998599999999999989999755
Q 537021.9.peg.9 12 VDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKH 48 (56)
Q Consensus 12 vdveyvkhiesimaslrkeeyekmkevrksynsflkh 48 (56)
-+.|-++.|-++..-|-|-.||..-+-|.-+-+||..
T Consensus 3 ~~iE~v~eIiaiaSiLIKf~~edIl~~q~~FI~FLNE 39 (90)
T 1jr5_A 3 KNIDTVREIITVASILIKFSREDIVENRANFIAFLNE 39 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 3299999999999999982799998729999999998
Done!