RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= 537021.9.peg.905_1
(56 letters)
>gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related),
catalytic domain; The ATR catalytic domain subfamily is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. ATR is also referred to as Mei-41
(Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae),
Rad3 (Schizosaccharomyces pombe), and FRAP-related
protein (human). ATR is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). ATR contains a UME
domain of unknown function, a FAT (FRAP, ATM and TRRAP)
domain, a catalytic domain, and a FATC domain at the
C-terminus. Together with its downstream effector
kinase, Chk1, ATR plays a central role in regulating the
replication checkpoint. ATR stabilizes replication forks
by promoting the association of DNA polymerases with the
fork. Preventing fork collapse is essential in
preserving genomic integrity. ATR plays a role in normal
cell growth and in response to DNA damage..
Length = 237
Score = 28.0 bits (63), Expect = 0.56
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 3 IIDGLGVHGVDVEYVKHIESIMASLRKEEYEKM 35
++D +GV GV+ + K E + LR + M
Sbjct: 189 MVDAMGVLGVEGLFRKSCEVTLRLLRSNKETLM 221
>gnl|CDD|36110 KOG0892, KOG0892, KOG0892, Protein kinase ATM/Tel1, involved in
telomere length regulation and DNA repair [Signal
transduction mechanisms, Chromatin structure and
dynamics, Replication, recombination and repair, Cell
cycle control, cell division, chromosome partitioning].
Length = 2806
Score = 27.7 bits (61), Expect = 0.66
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 3 IIDGLGVHGVDVEYVKHIESIMASLRKEE 31
I+DG+G+ GV+ + + E + LR+E+
Sbjct: 2675 IVDGMGITGVEGVFRRCCEFTLEVLRREK 2703
>gnl|CDD|38343 KOG3133, KOG3133, KOG3133, 40 kDa farnesylated protein associated
with peroxisomes [Intracellular trafficking, secretion,
and vesicular transport].
Length = 267
Score = 27.7 bits (61), Expect = 0.70
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 20 IESIMASLRKEE--YEKMKEVRKSYNSFLK-HKASL 52
+ESIM L +E YE +KE+ +Y +L+ + SL
Sbjct: 148 MESIMQQLLSKEILYEPLKELGANYPKWLEENGESL 183
>gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic
domain; The ATM catalytic domain subfamily is part of a
larger superfamily that includes the catalytic domains
of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. ATM is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). ATM contains a FAT
(FRAP, ATM and TRRAP) domain, a catalytic domain, and a
FATC domain at the C-terminus. ATM is critical in the
response to DNA double strand breaks (DSBs) caused by
radiation. It is activated at the site of a DSB and
phosphorylates key substrates that trigger pathways that
regulate DNA repair and cell cycle checkpoints at the
G1/S, S phase, and G2/M transition. Patients with the
human genetic disorder Ataxia telangiectasia (A-T),
caused by truncating mutations in ATM, show genome
instability, increased cancer risk, immunodeficiency,
compromised mobility, and neurodegeneration. A-T
displays clinical heterogeneity, which is correlated to
the degree of retained ATM activity..
Length = 279
Score = 26.4 bits (59), Expect = 2.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 3 IIDGLGVHGVDVEYVKHIESIMASLRKE 30
I+DG+G+ GV+ + + E + LR
Sbjct: 231 IVDGMGITGVEGVFRRCCEKTLEVLRDN 258
>gnl|CDD|31465 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 26.0 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 7 LGVHGVDVEYVKHIESIMASLRKEEYEKM 35
LGV D YV H IM + KE EK+
Sbjct: 143 LGVELTDSPYVVHSMRIMTRMGKEVLEKL 171
>gnl|CDD|36108 KOG0890, KOG0890, KOG0890, Protein kinase of the PI-3 kinase family
involved in mitotic growth, DNA repair and meiotic
recombination [Signal transduction mechanisms, Chromatin
structure and dynamics, Replication, recombination and
repair, Cell cycle control, cell division, chromosome
partitioning].
Length = 2382
Score = 24.6 bits (53), Expect = 7.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 3 IIDGLGVHGVDVEYVKHIESIMASLRKEE 31
+ID +G G++ + K E + LRK
Sbjct: 2269 MIDAMGPLGLEGSFRKVCEITLRLLRKNR 2297
>gnl|CDD|109884 pfam00846, Hanta_nucleocap, Hantavirus nucleocapsid protein.
Length = 428
Score = 24.1 bits (52), Expect = 8.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 22 SIMASLR-KEEYEKMKEVRKSYNSFLKHKASLGIKV 56
+IMAS EK+K+ Y S+L+ S+GI++
Sbjct: 340 TIMASKTVGTAEEKLKKKSAFYQSYLRRTQSMGIQL 375
>gnl|CDD|34637 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the
PI-3 kinase family [Signal transduction mechanisms / Cell
division and chromosome partitioning / Chromatin
structure and dynamics / DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 2105
Score = 24.3 bits (52), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 3 IIDGLGVHGVDVEYVKHIESIMASLRKEE 31
I++ +GV GV+ + + E+ +LRK
Sbjct: 1993 IVEAMGVSGVEGSFRELCETAFRALRKNA 2021
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.136 0.365
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 644,408
Number of extensions: 23666
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 14
Length of query: 56
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,658,685
Effective search space: 158443180
Effective search space used: 158443180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)