RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.905_1 (56 letters) >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} (A:118-217) Length = 100 Score = 24.7 bits (54), Expect = 3.9 Identities = 6/34 (17%), Positives = 16/34 (47%) Query: 15 EYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKH 48 +Y+ ++ + A E +++ VR+ Y + Sbjct: 9 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 42 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:389-434,A:733-794) Length = 108 Score = 24.0 bits (52), Expect = 7.8 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 16 YVKHIESIMASLRKEEYEKMKEVRKS 41 +V ++ A LRKE E EVRK+ Sbjct: 47 FVPELKEFTAKLRKELVET-SEVRKA 71 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.136 0.365 Gapped Lambda K H 0.267 0.0430 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 413,539 Number of extensions: 13381 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 10 Length of query: 56 Length of database: 4,956,049 Length adjustment: 26 Effective length of query: 30 Effective length of database: 4,077,119 Effective search space: 122313570 Effective search space used: 122313570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.8 bits)