RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.905_1
         (56 letters)



>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain,
          structural protein; 3.00A {Mus musculus} (A:118-217)
          Length = 100

 Score = 24.7 bits (54), Expect = 3.9
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 15 EYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKH 48
          +Y+  ++ + A     E +++  VR+ Y     +
Sbjct: 9  DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 42


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:389-434,A:733-794)
          Length = 108

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 16 YVKHIESIMASLRKEEYEKMKEVRKS 41
          +V  ++   A LRKE  E   EVRK+
Sbjct: 47 FVPELKEFTAKLRKELVET-SEVRKA 71


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.136    0.365 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 413,539
Number of extensions: 13381
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 10
Length of query: 56
Length of database: 4,956,049
Length adjustment: 26
Effective length of query: 30
Effective length of database: 4,077,119
Effective search space: 122313570
Effective search space used: 122313570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)