BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.905_1
(56 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.905_1
Length = 56
Score = 110 bits (275), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MIIIDGLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKHKASLGIKV 56
MIIIDGLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKHKASLGIKV
Sbjct: 1 MIIIDGLGVHGVDVEYVKHIESIMASLRKEEYEKMKEVRKSYNSFLKHKASLGIKV 56
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 22.7 bits (47), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 4 IDGLGVHGVD-VEYVKHIESIMASLRKEEYEKMKEVRKSYN 43
+D L + +Y KH +++ L K ++ +M RK++N
Sbjct: 207 VDPLTPRDISFTQYEKHACALVNWLEKGKFNEMSIARKAFN 247
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 21.2 bits (43), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 10 HGVDVE-YVKHIESIMASLRKEEYEKMKEVRKSYN 43
HG E Y+ H+ ++ L+ ++++ ++ RKSYN
Sbjct: 43 HGKGYESYISHVCELIELLKNKDFDGVEIERKSYN 77
>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 214
Score = 21.2 bits (43), Expect = 3.8, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 4 IDGLGVHGVDVE----YVKHIESIMASLRKEEYEKMKEVRKSY 42
I+G+ + D E Y+ HI+ + L+K+ KE+R +
Sbjct: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
>gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Liberibacter asiaticus str. psy62]
Length = 309
Score = 20.4 bits (41), Expect = 6.0, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 40 KSYNSFLKHKASLGIKV 56
KSY K+K LG K+
Sbjct: 126 KSYQDIAKYKKELGAKI 142
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 20.4 bits (41), Expect = 6.3, Method: Composition-based stats.
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 32 YEKMKEVRKSYNSF 45
Y+++K V K Y SF
Sbjct: 464 YDRLKSVSKGYASF 477
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.136 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,635
Number of Sequences: 1233
Number of extensions: 965
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 56
length of database: 328,796
effective HSP length: 28
effective length of query: 28
effective length of database: 294,272
effective search space: 8239616
effective search space used: 8239616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)