Query 537021.9.peg.91_1
Match_columns 46
No_of_seqs 101 out of 1109
Neff 5.6
Searched_HMMs 39220
Date Mon May 23 15:33:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_91.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10425 DNase TatD; Provision 99.4 4.7E-13 1.2E-17 95.5 4.3 42 2-43 1-42 (258)
2 COG0084 TatD Mg-dependent DNas 99.2 8.2E-12 2.1E-16 88.5 4.4 43 1-43 2-44 (256)
3 PRK10812 putative metallodepen 99.2 7.5E-12 1.9E-16 88.7 3.9 43 1-43 2-47 (265)
4 PRK11449 putative deoxyribonuc 99.2 1.1E-11 2.7E-16 87.8 4.3 42 2-43 5-46 (258)
5 TIGR00010 TIGR00010 hydrolase, 99.1 2.7E-11 7E-16 85.6 3.2 42 2-43 1-45 (269)
6 cd01310 TatD_DNAse TatD like p 99.1 5.9E-11 1.5E-15 83.7 4.1 42 2-43 1-42 (251)
7 pfam01026 TatD_DNase TatD rela 99.0 2.8E-10 7.1E-15 79.9 3.8 41 3-43 1-41 (255)
8 KOG3020 consensus 96.3 0.002 5.1E-08 41.3 1.9 43 1-43 17-59 (296)
9 PRK07328 histidinol-phosphatas 93.9 0.08 2E-06 32.3 3.9 36 1-36 1-37 (268)
10 PRK05588 histidinol-phosphatas 93.1 0.14 3.5E-06 31.0 4.0 33 1-33 1-34 (256)
11 COG4464 CapC Capsular polysacc 93.1 0.062 1.6E-06 32.9 2.2 39 2-40 1-44 (254)
12 pfam01979 Amidohydro_1 Amidohy 90.9 0.13 3.3E-06 31.1 1.8 38 2-39 6-48 (307)
13 COG3618 Predicted metal-depend 90.0 0.26 6.8E-06 29.4 2.8 41 1-41 8-62 (279)
14 PRK08123 histidinol-phosphatas 87.3 0.67 1.7E-05 27.1 3.3 35 1-35 1-37 (266)
15 cd01302 Cyclic_amidohydrolases 86.1 0.88 2.2E-05 26.5 3.4 36 2-37 7-45 (337)
16 COG1099 Predicted metal-depend 85.9 0.23 5.8E-06 29.8 0.3 41 1-41 1-75 (254)
17 cd01292 metallo-dependent_hydr 85.1 0.72 1.8E-05 27.0 2.6 37 2-38 1-57 (275)
18 cd01308 Isoaspartyl-dipeptidas 83.7 1.4 3.7E-05 25.3 3.6 34 2-35 56-94 (387)
19 PRK09357 pyrC dihydroorotase; 83.4 1.1 2.8E-05 25.9 2.9 34 2-35 57-92 (425)
20 PRK07575 dihydroorotase; Provi 82.6 1.2 3E-05 25.8 2.8 38 2-39 57-97 (439)
21 PRK00369 pyrC dihydroorotase; 82.6 1.7 4.2E-05 24.9 3.5 35 2-36 50-86 (393)
22 cd01316 CAD_DHOase The eukaryo 82.5 1.6 4.2E-05 24.9 3.5 35 2-36 8-44 (344)
23 PRK07627 dihydroorotase; Provi 81.8 1.2 3.1E-05 25.7 2.6 34 2-35 57-92 (425)
24 cd01317 DHOase_IIa Dihydroorot 81.5 1.5 3.9E-05 25.1 3.0 34 2-35 16-51 (374)
25 PRK09236 dihydroorotase; Revie 81.2 1.7 4.2E-05 24.9 3.1 34 2-35 56-91 (444)
26 cd01311 PDC_hydrolase 2-pyrone 81.1 1.8 4.5E-05 24.7 3.2 38 2-39 2-51 (263)
27 cd01318 DHOase_IIb Dihydroorot 80.4 2.2 5.5E-05 24.3 3.5 35 2-36 8-44 (361)
28 PRK09059 dihydroorotase; Valid 79.6 2 5.1E-05 24.5 3.1 34 2-35 62-97 (429)
29 PRK08323 dihydropyrimidinase; 79.3 1.8 4.7E-05 24.7 2.8 34 2-35 54-91 (463)
30 PRK02382 dihydroorotase; Provi 78.9 2.1 5.3E-05 24.4 3.0 35 2-36 55-91 (440)
31 PRK08044 allantoinase; Provisi 78.7 2 5.1E-05 24.5 2.9 35 2-36 55-91 (449)
32 PRK07369 dihydroorotase; Provi 78.6 2.3 5.8E-05 24.1 3.1 34 2-35 59-94 (419)
33 PRK09248 putative hydrolase; V 78.5 3.3 8.5E-05 23.2 4.0 35 1-35 3-38 (246)
34 TIGR03178 allantoinase allanto 77.9 1.9 4.9E-05 24.6 2.6 35 2-36 53-89 (442)
35 cd01315 L-HYD_ALN L-Hydantoina 75.8 3.1 7.9E-05 23.4 3.2 35 2-36 54-90 (447)
36 PRK09060 dihydroorotase; Valid 75.3 2.9 7.5E-05 23.5 2.9 35 2-36 58-94 (444)
37 PRK01211 dihydroorotase; Provi 75.1 3.3 8.3E-05 23.3 3.1 35 2-36 50-86 (413)
38 COG0613 Predicted metal-depend 74.0 3.9 9.9E-05 22.8 3.3 34 1-34 2-35 (258)
39 PRK08417 dihydroorotase; Provi 73.6 3.6 9.1E-05 23.1 3.0 33 2-34 32-65 (387)
40 cd01314 D-HYD D-hydantoinases 73.0 3.9 9.9E-05 22.8 3.1 34 2-35 53-90 (447)
41 PRK08392 hypothetical protein; 72.7 4.1 0.0001 22.7 3.2 33 3-35 1-33 (215)
42 PRK13404 dihydropyrimidinase; 72.6 4.4 0.00011 22.5 3.3 34 2-35 56-94 (476)
43 PRK04250 dihydroorotase; Provi 71.9 4.6 0.00012 22.4 3.3 35 2-36 54-90 (408)
44 LOAD_php consensus 71.9 5.2 0.00013 22.1 3.5 35 2-36 1-37 (206)
45 PRK10657 isoaspartyl dipeptida 70.3 3.6 9.2E-05 23.0 2.4 34 2-35 57-95 (384)
46 PRK06361 hypothetical protein; 70.2 5.6 0.00014 22.0 3.4 34 2-35 1-34 (216)
47 TIGR01792 urease_alph urease, 67.5 3.2 8.1E-05 23.3 1.7 30 3-39 140-169 (605)
48 cd01295 AdeC Adenine deaminase 66.7 5.9 0.00015 21.8 2.9 32 2-35 11-42 (422)
49 PRK06189 allantoinase; Provisi 66.1 5.9 0.00015 21.8 2.8 35 2-36 56-92 (433)
50 cd01307 Met_dep_hydrolase_B Me 64.6 5.9 0.00015 21.8 2.6 33 2-37 36-70 (338)
51 cd01299 Met_dep_hydrolase_A Me 64.3 4 0.0001 22.8 1.7 37 2-38 15-64 (342)
52 cd00854 NagA N-acetylglucosami 61.5 6.4 0.00016 21.6 2.3 33 2-34 53-90 (374)
53 PRK09237 dihydroorotase; Provi 61.3 8.5 0.00022 20.9 2.9 32 2-36 59-92 (384)
54 COG1387 HIS2 Histidinol phosph 60.8 12 0.0003 20.1 3.6 35 1-35 1-35 (237)
55 TIGR03583 EF_0837 probable ami 59.9 3.8 9.7E-05 22.9 0.9 35 2-39 52-88 (365)
56 TIGR00113 queA S-adenosylmethi 59.4 6.4 0.00016 21.6 2.0 36 8-44 244-279 (364)
57 PRK13308 ureC urease subunit a 58.7 7.4 0.00019 21.3 2.2 31 3-40 136-166 (569)
58 PRK13985 UreB urease subunit b 57.9 8.7 0.00022 20.9 2.5 31 3-40 132-162 (568)
59 cd00375 Urease_alpha Urease al 56.7 8.8 0.00023 20.8 2.4 31 3-40 132-162 (567)
60 PRK13206 ureC urease subunit a 56.5 9.6 0.00024 20.6 2.5 31 3-40 138-168 (573)
61 KOG4549 consensus 56.1 14 0.00035 19.7 3.3 35 2-36 20-67 (144)
62 PRK13207 ureC urease subunit a 55.1 11 0.00027 20.4 2.5 31 3-40 132-162 (568)
63 PRK13309 ureC urease subunit a 53.2 9.9 0.00025 20.5 2.1 31 3-40 136-166 (572)
64 pfam02811 PHP PHP domain. The 53.2 20 0.0005 18.9 3.7 33 3-35 1-35 (173)
65 TIGR01858 tag_bisphos_ald clas 52.9 9.4 0.00024 20.7 2.0 25 18-43 212-236 (282)
66 PRK12394 putative metallo-depe 51.2 6.8 0.00017 21.5 1.1 35 2-39 59-95 (387)
67 TIGR01036 pyrD_sub2 dihydrooro 51.0 18 0.00045 19.1 3.1 30 15-44 235-264 (370)
68 TIGR00719 sda_beta L-serine de 48.2 18 0.00046 19.1 2.8 29 9-37 69-97 (208)
69 cd01294 DHOase Dihydroorotase 47.4 25 0.00063 18.3 3.4 30 2-35 6-35 (335)
70 PRK11170 nagA N-acetylglucosam 45.9 17 0.00043 19.2 2.4 36 2-37 55-99 (381)
71 smart00481 POLIIIAc DNA polyme 45.4 31 0.0008 17.7 3.7 33 4-36 1-35 (67)
72 pfam08981 consensus 44.5 26 0.00067 18.2 3.2 28 15-42 11-38 (181)
73 PRK00147 queA S-adenosylmethio 44.3 18 0.00045 19.1 2.3 33 11-44 227-261 (345)
74 pfam02614 UxaC Glucuronate iso 44.1 8.4 0.00021 21.0 0.6 36 2-37 25-73 (465)
75 COG1086 Predicted nucleoside-d 44.0 24 0.00062 18.4 2.9 23 18-40 356-378 (588)
76 PRK02925 glucuronate isomerase 43.0 9.1 0.00023 20.8 0.6 34 2-35 29-75 (466)
77 PRK09228 guanine deaminase; Pr 40.7 36 0.00092 17.4 3.4 17 22-38 120-136 (429)
78 TIGR03589 PseB UDP-N-acetylglu 40.7 23 0.00059 18.5 2.4 22 19-40 106-127 (324)
79 PRK00912 ribonuclease P protei 40.3 36 0.00093 17.4 3.4 35 1-36 5-39 (237)
80 cd03409 Chelatase_Class_II Cla 39.7 36 0.00091 17.4 3.3 35 5-39 33-68 (101)
81 cd01320 ADA Adenosine deaminas 39.4 22 0.00056 18.6 2.1 26 3-31 5-30 (325)
82 PRK01424 S-adenosylmethionine: 39.2 24 0.0006 18.4 2.3 34 10-44 248-283 (366)
83 TIGR01430 aden_deam adenosine 37.1 28 0.00071 18.0 2.4 26 3-31 4-29 (346)
84 cd01309 Met_dep_hydrolase_C Me 37.0 21 0.00054 18.7 1.7 17 19-35 73-89 (359)
85 PRK13125 trpA tryptophan synth 36.7 31 0.00079 17.8 2.6 28 12-39 87-114 (247)
86 COG0044 PyrC Dihydroorotase an 36.7 36 0.00091 17.4 2.9 34 2-35 55-90 (430)
87 TIGR01116 ATPase-IIA1_Ca calci 36.5 31 0.0008 17.7 2.6 25 15-39 465-492 (800)
88 COG1904 UxaC Glucuronate isome 36.5 14 0.00036 19.7 0.8 36 2-37 27-75 (463)
89 COG0804 UreC Urea amidohydrola 36.2 21 0.00053 18.7 1.6 31 3-40 132-162 (568)
90 TIGR02033 D-hydantoinase dihyd 35.6 11 0.00028 20.3 0.1 13 3-15 57-69 (466)
91 COG1228 HutI Imidazolonepropio 35.5 15 0.00039 19.5 0.8 12 2-13 66-77 (406)
92 pfam04909 Amidohydro_2 Amidohy 34.3 38 0.00096 17.3 2.7 37 3-39 1-52 (270)
93 TIGR02482 PFKA_ATP 6-phosphofr 34.0 40 0.001 17.1 2.8 28 11-38 71-100 (302)
94 cd02072 Glm_B12_BD B12 binding 33.7 23 0.00059 18.5 1.5 29 15-43 94-122 (128)
95 PRK02261 methylaspartate mutas 32.9 26 0.00065 18.2 1.6 29 16-44 99-127 (137)
96 PRK09061 D-glutamate deacylase 32.4 28 0.0007 18.1 1.7 28 2-36 58-85 (496)
97 pfam00962 A_deaminase Adenosin 30.8 32 0.00081 17.7 1.8 26 3-31 5-30 (329)
98 TIGR00676 fadh2 5,10-methylene 30.7 38 0.00096 17.3 2.2 31 5-35 76-107 (302)
99 pfam07969 Amidohydro_3 Amidohy 30.7 12 0.00032 20.0 -0.3 10 2-11 6-15 (392)
100 PTZ00124 adenosine deaminase; 30.3 42 0.0011 17.0 2.4 25 4-31 39-63 (362)
101 PRK08418 chlorohydrolase; Prov 29.0 17 0.00045 19.2 0.2 10 2-11 60-69 (407)
102 TIGR01244 TIGR01244 conserved 28.7 38 0.00097 17.3 1.9 16 16-31 113-128 (136)
103 PRK06846 deaminase; Validated 28.5 56 0.0014 16.3 2.8 10 2-11 69-78 (410)
104 TIGR02152 D_ribokin_bact ribok 28.4 45 0.0012 16.8 2.3 20 18-37 146-165 (303)
105 COG0159 TrpA Tryptophan syntha 28.1 64 0.0016 16.0 3.1 31 12-42 105-135 (265)
106 cd01312 Met_dep_hydrolase_D Me 28.1 16 0.00041 19.4 -0.1 10 2-11 33-42 (381)
107 PRK06886 hypothetical protein; 27.6 63 0.0016 16.0 2.9 31 3-33 178-208 (328)
108 TIGR00419 tim triosephosphate 27.3 58 0.0015 16.2 2.7 27 16-42 103-131 (244)
109 pfam12257 DUF3608 Protein of u 26.6 42 0.0011 17.0 1.8 34 3-36 86-120 (281)
110 PRK05286 dihydroorotate dehydr 26.6 54 0.0014 16.4 2.4 29 15-43 221-249 (336)
111 CHL00194 ycf39 Ycf39; Provisio 25.6 71 0.0018 15.7 2.9 19 20-38 92-110 (319)
112 PRK09358 adenosine deaminase; 25.5 39 0.001 17.2 1.5 25 4-31 13-37 (333)
113 cd01830 XynE_like SGNH_hydrola 24.9 70 0.0018 15.8 2.7 28 8-35 98-125 (204)
114 PRK13126 consensus 24.8 74 0.0019 15.6 3.0 27 12-38 78-104 (237)
115 cd04738 DHOD_2_like Dihydrooro 24.0 74 0.0019 15.7 2.7 29 15-43 215-243 (327)
116 PRK07583 cytosine deaminase; V 23.9 62 0.0016 16.1 2.3 10 2-11 77-86 (437)
117 TIGR03473 HpnK hopanoid biosyn 23.1 62 0.0016 16.1 2.2 33 2-36 126-158 (283)
118 TIGR03649 ergot_EASG ergot alk 23.0 80 0.002 15.4 2.9 25 15-39 82-106 (285)
119 PRK04302 triosephosphate isome 22.8 81 0.0021 15.4 3.1 29 12-40 97-125 (223)
120 TIGR02199 rfaE_dom_II rfaE bif 22.4 67 0.0017 15.9 2.2 26 17-44 26-51 (144)
121 cd03413 CbiK_C Anaerobic cobal 22.3 83 0.0021 15.4 3.4 22 15-36 41-62 (103)
122 cd04724 Tryptophan_synthase_al 22.3 83 0.0021 15.4 2.9 28 14-41 89-116 (242)
123 PRK07106 5-aminoimidazole-4-ca 22.1 49 0.0012 16.7 1.5 25 18-42 343-367 (391)
124 TIGR01099 galU UTP-glucose-1-p 22.0 80 0.002 15.5 2.5 27 18-44 35-61 (270)
125 PRK13139 consensus 21.9 84 0.0022 15.3 2.8 28 14-41 105-132 (254)
126 COG0149 TpiA Triosephosphate i 21.9 65 0.0016 16.0 2.1 33 9-41 101-133 (251)
127 PRK13113 consensus 21.6 83 0.0021 15.4 2.6 28 14-41 107-134 (263)
128 PRK07945 hypothetical protein; 21.1 88 0.0022 15.2 2.9 19 12-30 241-259 (335)
129 PRK13138 consensus 21.0 88 0.0023 15.2 2.7 27 14-40 103-129 (264)
130 TIGR00677 fadh2_euk methylenet 20.9 67 0.0017 15.9 2.0 33 3-35 66-99 (312)
131 cd03415 CbiX_CbiC Archaeal sir 20.6 90 0.0023 15.2 3.2 27 11-37 38-65 (125)
132 COG1831 Predicted metal-depend 20.5 91 0.0023 15.1 3.4 35 2-38 7-41 (285)
133 pfam08671 SinI Anti-repressor 20.5 42 0.0011 17.0 0.9 18 15-32 2-19 (30)
134 PRK13127 consensus 20.3 91 0.0023 15.1 3.1 28 14-41 100-127 (262)
135 PRK13140 consensus 20.2 92 0.0023 15.1 3.1 28 14-41 103-130 (257)
136 cd01297 D-aminoacylase D-amino 20.1 27 0.00069 18.1 -0.2 31 2-35 55-85 (415)
No 1
>PRK10425 DNase TatD; Provisional
Probab=99.37 E-value=4.7e-13 Score=95.46 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=40.6
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 176424888646506889999999986998899964330320
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
||||||||++++|++|+++|++||+++||.+++++|++++++
T Consensus 1 liDtH~HL~~~~f~~d~~~vl~rA~~~gV~~ii~~g~~~~~~ 42 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGLLITGTNLRES 42 (258)
T ss_pred CEEEEECCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 977775889877757899999999987999899946999999
No 2
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=99.23 E-value=8.2e-12 Score=88.48 Aligned_cols=43 Identities=47% Similarity=0.773 Sum_probs=41.4
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 9176424888646506889999999986998899964330320
Q 537021.9.peg.9 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 1 MliDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
|||||||||+++.|.+|++++++||+++||.+++++|++.+++
T Consensus 2 ~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~ 44 (256)
T COG0084 2 MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDF 44 (256)
T ss_pred CCEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 6278505788033268999999999985993799961588888
No 3
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=99.22 E-value=7.5e-12 Score=88.69 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=38.4
Q ss_pred CEEEEECCCCCH---HHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 917642488864---6506889999999986998899964330320
Q 537021.9.peg.9 1 MLINTHCHFLLP---DFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 1 MliDtHcHL~~~---~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
|||||||||++. .|++|++++++||+++||.+++++|++++++
T Consensus 2 ~liDtHcHLd~~~~~~~~~d~~~vl~~a~~~gV~~~i~~g~~~~~~ 47 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGY 47 (265)
T ss_pred EEEEECCCCCCCCCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 5899535898321541013999999999986998899953998999
No 4
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=99.21 E-value=1.1e-11 Score=87.82 Aligned_cols=42 Identities=40% Similarity=0.613 Sum_probs=40.5
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 176424888646506889999999986998899964330320
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
+|||||||++++|++|++++++||+++||.+++++|++++++
T Consensus 5 ~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~~g~~~~~~ 46 (258)
T PRK11449 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANF 46 (258)
T ss_pred EEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 798611799815476999999999982999999934999999
No 5
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=99.13 E-value=2.7e-11 Score=85.55 Aligned_cols=42 Identities=36% Similarity=0.607 Sum_probs=40.3
Q ss_pred EEEEECCCCCHHHHC---CHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 176424888646506---889999999986998899964330320
Q 537021.9.peg.9 2 LINTHCHFLLPDFDE---DRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 2 liDtHcHL~~~~f~~---d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
||||||||++.+|.. |++++|+||+++||+.++.||+++++.
T Consensus 1 ~~D~HcHL~~~~~~~~~~d~~~v~~ra~~~~v~~~v~vg~~l~~~ 45 (269)
T TIGR00010 1 LIDAHCHLDLLDFEELHVDVEEVIERAKAEGVTAVVDVGTDLEDL 45 (269)
T ss_pred CCCCEECCCCCCCCHHCCCHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 911001356222212203589999999974992999734670020
No 6
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.11 E-value=5.9e-11 Score=83.66 Aligned_cols=42 Identities=43% Similarity=0.846 Sum_probs=40.0
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 176424888646506889999999986998899964330320
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
||||||||++++|+.|++++++||+++||.+++++|++++++
T Consensus 1 lIDsHcHL~~~~~~~d~~~vi~~a~~~gv~~ii~~~~~~~~~ 42 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSS 42 (251)
T ss_pred CEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 978504889814446999999999986998899968999999
No 7
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=99.00 E-value=2.8e-10 Score=79.87 Aligned_cols=41 Identities=34% Similarity=0.623 Sum_probs=39.3
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 76424888646506889999999986998899964330320
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
|||||||++++|+.|++++++||+++||.+++++|++++++
T Consensus 1 iD~H~HL~~~~~~~d~~~vl~~a~~~gv~~ii~~~~~~~~~ 41 (255)
T pfam01026 1 IDAHCHLDFKKFDGDRDEVIERAREAGVTAVVVVGTDLKDF 41 (255)
T ss_pred CEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 94313789814356999999999987999899956999999
No 8
>KOG3020 consensus
Probab=96.32 E-value=0.002 Score=41.33 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=40.5
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 9176424888646506889999999986998899964330320
Q 537021.9.peg.9 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 1 MliDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
|++|-+||+...+.+.+.+.++.+|...||.++++.|++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~ 59 (296)
T KOG3020 17 MLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDS 59 (296)
T ss_pred HHCHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 2210321234688776503788888753633788717882207
No 9
>PRK07328 histidinol-phosphatase; Provisional
Probab=93.91 E-value=0.08 Score=32.32 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.4
Q ss_pred CEEEEECCCCCHH-HHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 9176424888646-50688999999998699889996
Q 537021.9.peg.9 1 MLINTHCHFLLPD-FDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 1 MliDtHcHL~~~~-f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
|++|.|+|-.+.. =.+.+++.+++|.+.|+..+-..
T Consensus 1 M~~D~H~HT~~s~~a~~~~ee~v~~Ai~~Gl~~i~~T 37 (268)
T PRK07328 1 MLVDSHLHTPLCGHATGTPEEYVEEARAKGLAEIGFT 37 (268)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 9847454799889988819999999998799989972
No 10
>PRK05588 histidinol-phosphatase; Provisional
Probab=93.10 E-value=0.14 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=27.5
Q ss_pred CEEEEECCCCCH-HHHCCHHHHHHHHHHCCCCEE
Q ss_conf 917642488864-650688999999998699889
Q 537021.9.peg.9 1 MLINTHCHFLLP-DFDEDRHNVIMRAHQANVLKM 33 (46)
Q Consensus 1 MliDtHcHL~~~-~f~~d~d~vi~ra~~~gV~~~ 33 (46)
|++|.|.|-.+. .=...+++.+++|.+.|++-+
T Consensus 1 M~~D~H~HT~~s~da~~~~ee~v~~Ai~~Gl~~i 34 (256)
T PRK05588 1 MMFDTHIHTEFSTDSKMKIEEAIKKAKKNNLGII 34 (256)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9747636899989987769999999998699889
No 11
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.08 E-value=0.062 Score=32.94 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=27.1
Q ss_pred EEEEECCCCCH--HHHCCHHH---HHHHHHHCCCCEEEEEEEEE
Q ss_conf 17642488864--65068899---99999986998899964330
Q 537021.9.peg.9 2 LINTHCHFLLP--DFDEDRHN---VIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 2 liDtHcHL~~~--~f~~d~d~---vi~ra~~~gV~~~i~v~~~~ 40 (46)
|||.|||+-.. +=..++++ ++..|.++||++|+..+-..
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~ 44 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHL 44 (254)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 94501346678788987589999999999975760795133324
No 12
>pfam01979 Amidohydro_1 Amidohydrolase family. This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <= D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included.
Probab=90.94 E-value=0.13 Score=31.13 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=27.9
Q ss_pred EEEEECCCCCHHHH-----CCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 17642488864650-----688999999998699889996433
Q 537021.9.peg.9 2 LINTHCHFLLPDFD-----EDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 2 liDtHcHL~~~~f~-----~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
+||+|+|+....+. ++.......+...||+.++..+..
T Consensus 6 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~ 48 (307)
T pfam01979 6 LIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTS 48 (307)
T ss_pred EECHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf 4407438498786656799999999999995792899737766
No 13
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=90.03 E-value=0.26 Score=29.40 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.2
Q ss_pred CEEEEECCCCCHH--------------HHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 9176424888646--------------5068899999999869988999643303
Q 537021.9.peg.9 1 MLINTHCHFLLPD--------------FDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 1 MliDtHcHL~~~~--------------f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
|+||||.||-.++ .+-..++..+.++..||.+-+-+-++..
T Consensus 8 ~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~ 62 (279)
T COG3618 8 MIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVD 62 (279)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 5402134653566557888776666678989899999987548640699943667
No 14
>PRK08123 histidinol-phosphatase; Reviewed
Probab=87.34 E-value=0.67 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=28.8
Q ss_pred CEEEEECCCCCHHHH--CCHHHHHHHHHHCCCCEEEE
Q ss_conf 917642488864650--68899999999869988999
Q 537021.9.peg.9 1 MLINTHCHFLLPDFD--EDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 1 MliDtHcHL~~~~f~--~d~d~vi~ra~~~gV~~~i~ 35 (46)
|..|.|.|-.+.+.+ ..+++++++|.++|+..+-.
T Consensus 1 m~~D~H~HT~~s~h~~~~~lee~v~~Ai~~Gl~~ig~ 37 (266)
T PRK08123 1 MKRDGHTHTPFCPHGSKDSLEAYIERAIELGFTEITF 37 (266)
T ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 9954455889999988875999999999879998997
No 15
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=86.13 E-value=0.88 Score=26.48 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=29.1
Q ss_pred EEEEECCCCCHH---HHCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 176424888646---506889999999986998899964
Q 537021.9.peg.9 2 LINTHCHFLLPD---FDEDRHNVIMRAHQANVLKMIAIA 37 (46)
Q Consensus 2 liDtHcHL~~~~---f~~d~d~vi~ra~~~gV~~~i~v~ 37 (46)
+||.|+|+..+. +.+|+..--..|..-||+.++..-
T Consensus 7 ~iD~HvH~r~pg~~~~ked~~s~t~AAa~GGvTtv~~mP 45 (337)
T cd01302 7 FIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP 45 (337)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 787033257899988643599999999848800799898
No 16
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=85.85 E-value=0.23 Score=29.76 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=26.9
Q ss_pred CEEEEECCCCCHHHHC-------CHHHH---------------------------HHHHHHCCCCEEEEEEEEEH
Q ss_conf 9176424888646506-------88999---------------------------99999869988999643303
Q 537021.9.peg.9 1 MLINTHCHFLLPDFDE-------DRHNV---------------------------IMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 1 MliDtHcHL~~~~f~~-------d~d~v---------------------------i~ra~~~gV~~~i~v~~~~~ 41 (46)
|+||+|.|++.-.|++ .+.+| ..||.++|++..+.+|...+
T Consensus 1 ~~iD~HiH~d~r~~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr 75 (254)
T COG1099 1 MYIDSHIHLDVRGFEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPR 75 (254)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCC
T ss_conf 930442122434477999999838166642036887766688999999999722531688608304677333777
No 17
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=85.13 E-value=0.72 Score=26.95 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.6
Q ss_pred EEEEECCCCCHHHHC--------------------CHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 176424888646506--------------------8899999999869988999643
Q 537021.9.peg.9 2 LINTHCHFLLPDFDE--------------------DRHNVIMRAHQANVLKMIAIAI 38 (46)
Q Consensus 2 liDtHcHL~~~~f~~--------------------d~d~vi~ra~~~gV~~~i~v~~ 38 (46)
+||+|+|+....+.. .....+.++.++||+.++..+.
T Consensus 1 fID~H~H~~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~GvTtv~d~~~ 57 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGS 57 (275)
T ss_pred CEECCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 960674478887860741587054505999999999999999999769629986513
No 18
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=83.73 E-value=1.4 Score=25.27 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEEEECCCCC----HHHH-CCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886----4650-68899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLL----PDFD-EDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~----~~f~-~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+.. ..|. ...+...+++...|++.++.
T Consensus 56 ~ID~HvH~~~~g~~~~~~~~~~~~~~~~~~~~G~Tt~~~ 94 (387)
T cd01308 56 FIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVG 94 (387)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEC
T ss_conf 755122666888887755578899999999779518970
No 19
>PRK09357 pyrC dihydroorotase; Validated
Probab=83.39 E-value=1.1 Score=25.94 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=22.6
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 176424888646--5068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|||+..+. ..+++..-...|...||+.++.
T Consensus 57 fID~H~H~~~pg~~~~~~~~~g~~aa~~gGvTtv~~ 92 (425)
T PRK09357 57 LVDLHVHLREPGQEYKETIETGTRAAAAGGFTTVVA 92 (425)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf 897771678899763003667689998578058961
No 20
>PRK07575 dihydroorotase; Provisional
Probab=82.63 E-value=1.2 Score=25.77 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=29.1
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEE-EEEE
Q ss_conf 1764248886465--068899999999869988999-6433
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIA-IAIK 39 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~-v~~~ 39 (46)
+||.|+|+..+.+ .+|+..--+.|..-||+.++. |.++
T Consensus 57 ~ID~HvH~~~pg~~~ked~~tgs~AAa~GGvTtv~~mpnt~ 97 (439)
T PRK07575 57 VIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMPNTK 97 (439)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 89765255899875220476658999849878999657888
No 21
>PRK00369 pyrC dihydroorotase; Provisional
Probab=82.56 E-value=1.7 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=28.9
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1764248886465--0688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+.+ .+|+..--..|..-||+.++..
T Consensus 50 ~ID~HvH~rePG~~~kEd~~sgt~AAaaGGvTtv~~m 86 (393)
T PRK00369 50 VIDMHVHLRGLKLSYKEDVASATSEAAYGGITLVADM 86 (393)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 8880444699998765759999999980994899989
No 22
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=82.50 E-value=1.6 Score=24.93 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=28.0
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864--650688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLP--DFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~--~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+ ...+|+..--..|..-||+.++..
T Consensus 8 ~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~m 44 (344)
T cd01316 8 LIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAM 44 (344)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 8800577799998774649999999984797799779
No 23
>PRK07627 dihydroorotase; Provisional
Probab=81.82 E-value=1.2 Score=25.68 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=26.7
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 17642488864--65068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLP--DFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~--~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+..+ .+.++++.-...|..-||+.++.
T Consensus 57 ~ID~HvH~~~pg~~~~e~~~s~~~AA~~GGvTtv~~ 92 (425)
T PRK07627 57 LVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVC 92 (425)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEE
T ss_conf 997775568898541010552789997188789985
No 24
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=81.48 E-value=1.5 Score=25.14 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=25.6
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 176424888646--5068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+..+. ..+++..--+.|...||+.++.
T Consensus 16 ~ID~H~H~~~pg~~~~e~~~t~t~aA~~GGvTtii~ 51 (374)
T cd01317 16 LVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVC 51 (374)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEE
T ss_conf 685450359999765144999999998399589997
No 25
>PRK09236 dihydroorotase; Reviewed
Probab=81.17 E-value=1.7 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465--068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|||+..+.+ .+++..--+.|...||+.++.
T Consensus 56 ~ID~H~H~~epg~~~ke~~~s~s~aA~~GGvTtv~~ 91 (444)
T PRK09236 56 MIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMD 91 (444)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 897222548999754352667789998489139973
No 26
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=81.09 E-value=1.8 Score=24.75 Aligned_cols=38 Identities=11% Similarity=0.300 Sum_probs=29.7
Q ss_pred EEEEECCCCCHHH------------HCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 1764248886465------------0688999999998699889996433
Q 537021.9.peg.9 2 LINTHCHFLLPDF------------DEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 2 liDtHcHL~~~~f------------~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
-||+|+|+-.+.+ +...++..+..+..||.+.+.|-.+
T Consensus 2 aiD~H~Hv~dp~~~~~~~~~~~~p~~~~~~dl~~~~~~~Gi~r~VlVQ~s 51 (263)
T cd01311 2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQAS 51 (263)
T ss_pred CEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 78551245689988888867789999899999999998099659997888
No 27
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=80.42 E-value=2.2 Score=24.26 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=27.6
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1764248886465--0688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|||+..+.+ .+++..--..|..-||+.++..
T Consensus 8 ~ID~hvH~r~pg~~~~e~~~s~s~AA~aGGvTtv~~m 44 (361)
T cd01318 8 VIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDM 44 (361)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 4872414699997751509999999984895389989
No 28
>PRK09059 dihydroorotase; Validated
Probab=79.60 E-value=2 Score=24.45 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.1
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 176424888646--5068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|||+..+. ..+++..--..|..-||+.++.
T Consensus 62 ~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~ 97 (429)
T PRK09059 62 LVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIM 97 (429)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 898862569988544344888999998289079997
No 29
>PRK08323 dihydropyrimidinase; Validated
Probab=79.31 E-value=1.8 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEECCCCCH--H--HHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 17642488864--6--5068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLP--D--FDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~--~--f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+..+ . ..+++..--..|...||+.++-
T Consensus 54 ~ID~H~H~~~p~~g~~~~ed~~tgt~aA~~GGvTtv~~ 91 (463)
T PRK08323 54 GIDPHTHMEMPFGGTVAADDFETGTRAAAAGGTTTIID 91 (463)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 89744476888899605431888999997398289843
No 30
>PRK02382 dihydroorotase; Provisional
Probab=78.88 E-value=2.1 Score=24.36 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=26.9
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1764248886465--0688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+.+ .+++..--..|...||+.++..
T Consensus 55 ~ID~HvH~~~pg~~~~ed~~tgs~aAa~GGvTTvv~~ 91 (440)
T PRK02382 55 GIDVHVHFREPGMEHKETWYTGSCSAAAGGVTTVVDQ 91 (440)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf 9974506698986543556566899982992599357
No 31
>PRK08044 allantoinase; Provisional
Probab=78.66 E-value=2 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=27.3
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 176424888646--50688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+- ..++++.--+.|..-||+.++..
T Consensus 55 ~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~m 91 (449)
T PRK08044 55 MVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEM 91 (449)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 8977505699986431048888899974685579978
No 32
>PRK07369 dihydroorotase; Provisional
Probab=78.57 E-value=2.3 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=26.1
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465--068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|||+..+.+ .+++..--+.|..-||+.++.
T Consensus 59 ~ID~HvH~~~pg~~~ked~~tgt~AAa~GGvTtv~~ 94 (419)
T PRK07369 59 LVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAI 94 (419)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 997874579998643042988999998189769998
No 33
>PRK09248 putative hydrolase; Validated
Probab=78.52 E-value=3.3 Score=23.20 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=23.7
Q ss_pred CEEEEECCCCCHH-HHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 9176424888646-5068899999999869988999
Q 537021.9.peg.9 1 MLINTHCHFLLPD-FDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 1 MliDtHcHL~~~~-f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+++|.|+|=.+.. =...+.+.++.|++.|...+-+
T Consensus 3 ~~~DlH~HT~~S~ha~~ti~E~~~aA~~~Gl~~i~i 38 (246)
T PRK09248 3 YLVDTHTHTIASGHAYSTLHENAAEAKQKGIKLFAI 38 (246)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 455857788876899796999999999869968998
No 34
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=77.87 E-value=1.9 Score=24.57 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=25.0
Q ss_pred EEEEECCCCCHHHH--CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864650--688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDFD--EDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f~--~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+... ++++..-..|...||+.++..
T Consensus 53 fID~H~H~~~pg~~~~e~~~t~~~aa~~gGvTtv~~~ 89 (442)
T TIGR03178 53 VVDTHVHINEPGRTEWEGFETGTRAAAAGGITTFIDM 89 (442)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
T ss_conf 9985658899985431426677899965998899968
No 35
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=75.84 E-value=3.1 Score=23.39 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=24.7
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1764248886465--0688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+.. .+++..-.+.|...||+.++..
T Consensus 54 fID~H~H~~~pg~~~~e~~~~~~~aa~~gGvTtv~~~ 90 (447)
T cd01315 54 LIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDM 90 (447)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 6877758898874420406667999983893389967
No 36
>PRK09060 dihydroorotase; Validated
Probab=75.29 E-value=2.9 Score=23.53 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.5
Q ss_pred EEEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1764248886465--0688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+.+ .+|+..--..|..-||+.++..
T Consensus 58 ~ID~HvH~~ePG~~~ked~~sgs~AAa~GGvTtv~~m 94 (444)
T PRK09060 58 VIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEM 94 (444)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 8975505799997652446553498980993799977
No 37
>PRK01211 dihydroorotase; Provisional
Probab=75.12 E-value=3.3 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.3
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 176424888646--50688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+- ..+++..--..|..-||+.++..
T Consensus 50 ~ID~HvH~rePG~~~kEd~~tgs~AAa~GGvTtv~~m 86 (413)
T PRK01211 50 ATDIHVHFRTPGETYKEDFSTGSLSAIFGGTTTVMDM 86 (413)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 7799602699994303209999999982991899988
No 38
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=73.97 E-value=3.9 Score=22.83 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=27.9
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEE
Q ss_conf 9176424888646506889999999986998899
Q 537021.9.peg.9 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMI 34 (46)
Q Consensus 1 MliDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i 34 (46)
|.+|=|||=+...=.-...+++++|+++|+.-+-
T Consensus 2 ~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlA 35 (258)
T COG0613 2 MKADLHVHTTASDGGLTPREVVERAKAKGVDVLA 35 (258)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 7354337126789867989999999977997799
No 39
>PRK08417 dihydroorotase; Provisional
Probab=73.62 E-value=3.6 Score=23.05 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHH-CCHHHHHHHHHHCCCCEEE
Q ss_conf 17642488864650-6889999999986998899
Q 537021.9.peg.9 2 LINTHCHFLLPDFD-EDRHNVIMRAHQANVLKMI 34 (46)
Q Consensus 2 liDtHcHL~~~~f~-~d~d~vi~ra~~~gV~~~i 34 (46)
+||.|+|+..+.+. +|+..--+.|..-||+.++
T Consensus 32 ~ID~HvH~~~~~~~~~d~~tgs~AAa~GGvTtv~ 65 (387)
T PRK08417 32 LVDLNVRVKNDKLSLKNLKLLANEALKGGIGSIV 65 (387)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 8968747899997743599999999846878999
No 40
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=73.04 E-value=3.9 Score=22.85 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHH----HCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465----068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDF----DEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f----~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||+|+|+..+-. .+++..--..|...||+.++-
T Consensus 53 fID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~ 90 (447)
T cd01314 53 GIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIID 90 (447)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
T ss_conf 89877257888788645022889999999689169951
No 41
>PRK08392 hypothetical protein; Provisional
Probab=72.67 E-value=4.1 Score=22.71 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=24.4
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 764248886465068899999999869988999
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
||.|+|=.+..=...+.+.++.|++.|...+-+
T Consensus 1 iDlHtHT~~Sdg~~ti~E~~~aA~~~Gl~~i~I 33 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNVAWAEKRGLKLLGI 33 (215)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 966558784467787999999999879948998
No 42
>PRK13404 dihydropyrimidinase; Provisional
Probab=72.64 E-value=4.4 Score=22.54 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=25.1
Q ss_pred EEEEECCCCCH---H--HHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 17642488864---6--5068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLP---D--FDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~---~--f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+..+ . ..+|+..--..|..-||+.++.
T Consensus 56 ~ID~HvH~~~p~~~G~~~~ed~~tgs~aAa~GGvTtvv~ 94 (476)
T PRK13404 56 GVDSHCHIDQPSSDGIMMADDFESGTVSAAFGGTTTVIP 94 (476)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEC
T ss_conf 887235779876688452230999999998588149971
No 43
>PRK04250 dihydroorotase; Provisional
Probab=71.94 E-value=4.6 Score=22.43 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.7
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864--650688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLP--DFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~--~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|+..+ ...+++..--..|..-||+.++..
T Consensus 54 ~ID~hvH~~~pg~~~ke~~~sgs~AAa~GGvTtv~~m 90 (408)
T PRK04250 54 LIDVHVHLRDFEEKYKETIETGTKAALHGGITTVFDM 90 (408)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8964506788885303468878999983893599767
No 44
>LOAD_php consensus
Probab=71.87 E-value=5.2 Score=22.14 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=28.2
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864--650688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLP--DFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~--~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
++|-|||=.+. +=....++.+++|++.|...+-..
T Consensus 1 ~v~LH~HS~~S~~dg~~~~~elv~~A~~~G~~aiaiT 37 (206)
T LOAD_php 1 FIDLHVHSVYSLLDGALTLEELVEEAKKLGLEAIAIT 37 (206)
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 9664205222554311799999999998799889995
No 45
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=70.33 E-value=3.6 Score=23.02 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=21.3
Q ss_pred EEEEECCCCCH----HHHCC-HHHHHHHHHHCCCCEEEE
Q ss_conf 17642488864----65068-899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLP----DFDED-RHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~----~f~~d-~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+... .|... .+.....+...||+.++.
T Consensus 57 ~ID~H~Hi~~~gg~~~~~~~~pe~~~~~~~~~GvTTv~~ 95 (384)
T PRK10657 57 FIDQHVHIIGGGGEGGFTTRTPEVQLSDLTEAGITTVVG 95 (384)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEC
T ss_conf 100424988888887766689069999999759756945
No 46
>PRK06361 hypothetical protein; Provisional
Probab=70.17 E-value=5.6 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.5
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
|||-|+|=.+..=...+.++.+.|++.|...+-+
T Consensus 1 ~iDlH~HT~~SDG~~si~Ema~aA~~~G~~yiaI 34 (216)
T PRK06361 1 MIDLHTHTIFSDGELIPSELVRRARVLGYRAIAI 34 (216)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 9500427567699988999999999869909999
No 47
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=67.49 E-value=3.2 Score=23.32 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=24.9
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 7642488864650688999999998699889996433
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
+|||.|+=.|+ +.+.|.++||+.++-=||-
T Consensus 140 iDtHVHyi~P~-------~~~~AL~~GITT~~GGGTG 169 (605)
T TIGR01792 140 IDTHVHYISPQ-------QVQAALDSGITTLIGGGTG 169 (605)
T ss_pred CEEEEEEECCC-------HHHHHHCCCCEEEECCCCC
T ss_conf 40467860643-------7889852898799727435
No 48
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=66.70 E-value=5.9 Score=21.81 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+|+... .....+.-+.+...|++.++.
T Consensus 11 fID~HvHiess--~~tP~~~a~~~l~~GtTTvv~ 42 (422)
T cd01295 11 FIDAHLHIESS--MLTPSEFAKAVLPHGTTTVIA 42 (422)
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHCCCEEEEC
T ss_conf 74312788666--549999999998568279947
No 49
>PRK06189 allantoinase; Provisional
Probab=66.11 E-value=5.9 Score=21.82 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=23.8
Q ss_pred EEEEECCCCCHHHH--CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864650--688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDFD--EDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f~--~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|||+..+... +++..-.+.|..-||+.++..
T Consensus 56 ~ID~H~H~~~pg~~~~e~~~tg~~aa~~GGvTt~~~~ 92 (433)
T PRK06189 56 AVDCHVHFNEPGRTEWEGFETGSQALAAGGCTTYFDM 92 (433)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 8971427799984320207778999980880786136
No 50
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=64.61 E-value=5.9 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 176424888646--506889999999986998899964
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIAIA 37 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~v~ 37 (46)
+||+|+|+.... +..+.+. -+...||+.++-.+
T Consensus 36 lID~HvH~~~~~~~~~~~~~~---~~~~~GvTTvvd~~ 70 (338)
T cd01307 36 WIDLHVHVYQGGTRYGDRPDM---IGVKSGVTTVVDAG 70 (338)
T ss_pred EEEECCCCCCCCCCCCCCHHH---HHHCCCCEEEEECC
T ss_conf 256342899997566679888---75415826999678
No 51
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=64.26 E-value=4 Score=22.75 Aligned_cols=37 Identities=19% Similarity=0.039 Sum_probs=21.1
Q ss_pred EEEEECCCCCHHHHCCHH-------------HHHHHHHHCCCCEEEEEEE
Q ss_conf 176424888646506889-------------9999999869988999643
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRH-------------NVIMRAHQANVLKMIAIAI 38 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d-------------~vi~ra~~~gV~~~i~v~~ 38 (46)
|||+|+|+....+....+ .-...+...|++.+...+.
T Consensus 15 fID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~ 64 (342)
T cd01299 15 LIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGG 64 (342)
T ss_pred HHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 03173287676767414322777889999999999999769619987887
No 52
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=61.46 E-value=6.4 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=19.1
Q ss_pred EEEEECCCCC----HH-HHCCHHHHHHHHHHCCCCEEE
Q ss_conf 1764248886----46-506889999999986998899
Q 537021.9.peg.9 2 LINTHCHFLL----PD-FDEDRHNVIMRAHQANVLKMI 34 (46)
Q Consensus 2 liDtHcHL~~----~~-f~~d~d~vi~ra~~~gV~~~i 34 (46)
+||+|+|.-+ .+ ..+.+...-+.+...||+.++
T Consensus 53 lID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~GvTt~~ 90 (374)
T cd00854 53 FIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFL 90 (374)
T ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 00100179988887778999999999999964945996
No 53
>PRK09237 dihydroorotase; Provisional
Probab=61.32 E-value=8.5 Score=20.94 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=19.4
Q ss_pred EEEEECCCCCH--HHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864--650688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLP--DFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~--~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||+|+|+... .+..+-+ +-+...||+.++-.
T Consensus 59 ~ID~HvH~~~~~~~~~~~~~---~~a~~~GvTTvvd~ 92 (384)
T PRK09237 59 WIDLHVHVYPGSTIYGDEPD---EVGVKSGVTTVVDA 92 (384)
T ss_pred EEEECCCCCCCCCCCCCCHH---HHHHHCCCCEEEEC
T ss_conf 82723388888876676866---87875585178606
No 54
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=60.78 E-value=12 Score=20.11 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=27.9
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 91764248886465068899999999869988999
Q 537021.9.peg.9 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 1 MliDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
|.+|.|.|-.+..=..+..+.+++|.+.|-..+..
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~i 35 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAI 35 (237)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 98432125664367789999999999739965999
No 55
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=59.87 E-value=3.8 Score=22.89 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEEEECCCCCHH--HHCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 176424888646--50688999999998699889996433
Q 537021.9.peg.9 2 LINTHCHFLLPD--FDEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 2 liDtHcHL~~~~--f~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
|||.|+|+..+. +..+.++ -+.+.||+.++..|..
T Consensus 52 lID~H~H~~~~~~~~~~~~d~---~~~~~GvTTvvdaG~~ 88 (365)
T TIGR03583 52 WIDDHTHCFPKSALYYDEPDE---IGVKTGVTTVVDAGST 88 (365)
T ss_pred EEEEEECCCCCCCCCCCCCCH---HHHCCCCCEEEECCCC
T ss_conf 437403577898765547422---1112574559857988
No 56
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699 Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process.
Probab=59.36 E-value=6.4 Score=21.63 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=28.6
Q ss_pred CCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 8886465068899999999869988999643303200
Q 537021.9.peg.9 8 HFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 8 HL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
|=-+-+...+--++|+.+|++|= |+++|||+.-|||
T Consensus 244 H~E~~~vp~~~~~~~~k~~~~G~-Ri~aVGTTsvRsl 279 (364)
T TIGR00113 244 HAEYLEVPQETVEALEKTRESGG-RIIAVGTTSVRSL 279 (364)
T ss_pred CCHHEECCHHHHHHHHHHHHCCC-EEEEECCCHHHHH
T ss_conf 00001268789999999997098-3999876147779
No 57
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=58.70 E-value=7.4 Score=21.26 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.8
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
||||.|+-.++ .++.|..+||+.++--||-.
T Consensus 136 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGp 166 (569)
T PRK13308 136 IDVHVHFDSAG-------LVDHALASGITTMIGGGLGP 166 (569)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 04566633877-------89999861862325787578
No 58
>PRK13985 UreB urease subunit beta; Provisional
Probab=57.87 E-value=8.7 Score=20.87 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=25.6
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
||||.|+-.++ .++.|..+||+.++-=||-.
T Consensus 132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGP 162 (568)
T PRK13985 132 IDTHIHFISPQ-------QIPTAFASGVTTMIGGGTGP 162 (568)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 26576643888-------89999864865774487578
No 59
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=56.69 E-value=8.8 Score=20.83 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=25.6
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
||||.|+-.++ .++.|..+||+.++-=||-.
T Consensus 132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGP 162 (567)
T cd00375 132 IDTHVHFICPQ-------QIEEALASGITTMIGGGTGP 162 (567)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 16788843888-------89999865876763586678
No 60
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=56.50 E-value=9.6 Score=20.64 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=25.4
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
||||.|+-.++ .++.|..+||+.++-=||-.
T Consensus 138 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGP 168 (573)
T PRK13206 138 IDCHVHLICPQ-------IVDEALGAGITTIIGGGTGP 168 (573)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 36889844888-------89999866970674587678
No 61
>KOG4549 consensus
Probab=56.07 E-value=14 Score=19.75 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.5
Q ss_pred EEEEECCCCCHHH-------------HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1764248886465-------------0688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDF-------------DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f-------------~~d~d~vi~ra~~~gV~~~i~v 36 (46)
++|||-|-.+.+| +.|+..++...+++||+-++.-
T Consensus 20 ~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~AS 67 (144)
T KOG4549 20 LVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHAS 67 (144)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEC
T ss_conf 787214654346424766676045660435678999986592899952
No 62
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=55.07 E-value=11 Score=20.39 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=25.6
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
||||.|+-+++ .++.|..+||+.++-=||-.
T Consensus 132 iDtHvHfi~Pq-------q~~~Al~sGiTT~iGGGtGP 162 (568)
T PRK13207 132 IDTHIHFICPQ-------QIEEALASGVTTMIGGGTGP 162 (568)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 16655305887-------89999855866874587688
No 63
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=53.17 E-value=9.9 Score=20.55 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=25.5
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
||||.|+-.++ .+..|..+||+.++-=||-.
T Consensus 136 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGP 166 (572)
T PRK13309 136 IDSHIHLISPQ-------QAYHALSNGVATFFGGGIGP 166 (572)
T ss_pred CCCEEECCCHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 32100004778-------89999856876875686678
No 64
>pfam02811 PHP PHP domain. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain.
Probab=53.15 E-value=20 Score=18.87 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=26.0
Q ss_pred EEEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEE
Q ss_conf 764248886465--068899999999869988999
Q 537021.9.peg.9 3 INTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 3 iDtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+|-|+|=.+.-+ ...+++++++|++.|...+-.
T Consensus 1 v~LH~HT~~S~~dg~~~i~~lv~~a~~~g~~alai 35 (173)
T pfam02811 1 VDLHVHTDFSLLDGALSIEELVKAAKELGLEAIAI 35 (173)
T ss_pred CCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEE
T ss_conf 98705773715443679999999999869987999
No 65
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=52.92 E-value=9.4 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 89999999986998899964330320
Q 537021.9.peg.9 18 RHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 18 ~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
-|+.++|+-+-||.| +||+|++|-.
T Consensus 212 pde~v~~~IeLGi~K-vNVATeLKiA 236 (282)
T TIGR01858 212 PDEDVRRTIELGICK-VNVATELKIA 236 (282)
T ss_pred CHHHHHHHHHHCCCE-EECCHHCCHH
T ss_conf 767899998707413-4111110036
No 66
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=51.24 E-value=6.8 Score=21.47 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=21.7
Q ss_pred EEEEECCCCCHHHH--CCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 17642488864650--688999999998699889996433
Q 537021.9.peg.9 2 LINTHCHFLLPDFD--EDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 2 liDtHcHL~~~~f~--~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
|||.|+|++..... -+.|. -+...||+.++-.|..
T Consensus 59 lID~H~H~~~~~~~~g~~pD~---~~~~~GVTTvVDaGsa 95 (387)
T PRK12394 59 LIDYHAHVFYDATEGGVRPDM---YMPPNGVTTVVDAGSA 95 (387)
T ss_pred EEEEEECCCCCCCCCCCCCCC---CCCCCCCCEEEECCCC
T ss_conf 478734014688657638111---0146785658726998
No 67
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=50.97 E-value=18 Score=19.13 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=28.0
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 068899999999869988999643303200
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
++|+++|..-+.+.|+..+|...|++.+++
T Consensus 235 ~~dl~~IAd~~v~~~~dG~IATNTT~sR~~ 264 (370)
T TIGR01036 235 ESDLLDIADSAVELGIDGIIATNTTVSRDL 264 (370)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCEECCCC
T ss_conf 213899999998718984898445102520
No 68
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643 L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains. This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
Probab=48.16 E-value=18 Score=19.08 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=25.6
Q ss_pred CCCHHHHCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88646506889999999986998899964
Q 537021.9.peg.9 9 FLLPDFDEDRHNVIMRAHQANVLKMIAIA 37 (46)
Q Consensus 9 L~~~~f~~d~d~vi~ra~~~gV~~~i~v~ 37 (46)
|+|++||+.+-.-++-|+++|+...-.+.
T Consensus 69 L~F~~~D~RIKT~~~~A~~~G~~~~F~~~ 97 (208)
T TIGR00719 69 LDFDTDDDRIKTAIELAKAKGLDIIFRVE 97 (208)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 37798631578889999853982799850
No 69
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=47.42 E-value=25 Score=18.34 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=19.0
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|+||-. ++.-+-...+...|++..++
T Consensus 6 ~iD~HVHlRe----g~~~~~~~~a~a~G~t~v~~ 35 (335)
T cd01294 6 PDDMHLHLRD----GAMLKLVLPYTARGFSRAIV 35 (335)
T ss_pred CCEEEEECCC----CHHHHHHHHHHHCCCCEEEE
T ss_conf 8661443789----62588899998377869998
No 70
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=45.94 E-value=17 Score=19.24 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=20.3
Q ss_pred EEEEECCC----CCHHH-----HCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 17642488----86465-----06889999999986998899964
Q 537021.9.peg.9 2 LINTHCHF----LLPDF-----DEDRHNVIMRAHQANVLKMIAIA 37 (46)
Q Consensus 2 liDtHcHL----~~~~f-----~~d~d~vi~ra~~~gV~~~i~v~ 37 (46)
+||.|+|= ++.+. .+.+..+-+...+.||+.++-.-
T Consensus 55 fIDihihG~~G~~f~d~~~~~t~e~l~~~~~~~~~~GvTs~lpT~ 99 (381)
T PRK11170 55 FIDLQLNGCGGVQFNDTAEAISVETLEIMQKANLKSGCTSFLPTL 99 (381)
T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 988730788884767886445699999999987716878993565
No 71
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=45.41 E-value=31 Score=17.74 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=24.8
Q ss_pred EEECCCCCHHH--HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 64248886465--0688999999998699889996
Q 537021.9.peg.9 4 NTHCHFLLPDF--DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 4 DtHcHL~~~~f--~~d~d~vi~ra~~~gV~~~i~v 36 (46)
|=|+|=.+... ....++++++|++.|+..+-+.
T Consensus 1 dLh~HT~~S~~dg~~~~~~lv~~a~~~g~~~vaiT 35 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAIT 35 (67)
T ss_pred CCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 94887658565636899999999998799889996
No 72
>pfam08981 consensus
Probab=44.47 E-value=26 Score=18.18 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=22.3
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEEEEEHH
Q ss_conf 0688999999998699889996433032
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAIAIKVIR 42 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v~~~~~~ 42 (46)
+.-++..++||++.|++++++.+++=++
T Consensus 11 ~~tl~~a~~ra~e~gI~~iVvASssG~T 38 (181)
T pfam08981 11 EDTLELAAERAKELGIKHIVVASSSGET 38 (181)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 9999999999997699769998078779
No 73
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=44.27 E-value=18 Score=19.14 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=24.4
Q ss_pred CHHHH--CCHHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 64650--68899999999869988999643303200
Q 537021.9.peg.9 11 LPDFD--EDRHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 11 ~~~f~--~d~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
.|.|. ++--+.|++|+++| .+++.|||++-++|
T Consensus 227 ~E~~~I~~~t~~~I~~ak~~g-~rIiAVGTT~~RaL 261 (345)
T PRK00147 227 SEWYEVSQETADAINATKARG-GRVIAVGTTSVRTL 261 (345)
T ss_pred CEEEEECHHHHHHHHHHHHCC-CEEEEEECCHHHHH
T ss_conf 658998999999999888649-86999925289999
No 74
>pfam02614 UxaC Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyses the reactions: D-glucuronate <= D-fructuronate and D-galacturonate <= D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.
Probab=44.12 E-value=8.4 Score=20.96 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=23.7
Q ss_pred EEEEECCCCCHHHHC-----CHHHHH--------HHHHHCCCCEEEEEE
Q ss_conf 176424888646506-----889999--------999986998899964
Q 537021.9.peg.9 2 LINTHCHFLLPDFDE-----DRHNVI--------MRAHQANVLKMIAIA 37 (46)
Q Consensus 2 liDtHcHL~~~~f~~-----d~d~vi--------~ra~~~gV~~~i~v~ 37 (46)
|||-||||+-..+.+ ++-++. .-++.+||.-=.+.|
T Consensus 25 IidyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~iTG 73 (465)
T pfam02614 25 IIDYHCHLDPKEIAENKRFENITELWLAGDHYKWRAMRANGVPEDLITG 73 (465)
T ss_pred EECCCCCCCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHCCC
T ss_conf 7799889498998368999997998055851999999985998888079
No 75
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.00 E-value=24 Score=18.37 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 89999999986998899964330
Q 537021.9.peg.9 18 RHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 18 ~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
-..+++.|.++||.+++.+|||=
T Consensus 356 T~nv~~aa~~~~V~~~V~iSTDK 378 (588)
T COG1086 356 TENVAEAAIKNGVKKFVLISTDK 378 (588)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999999983977899970586
No 76
>PRK02925 glucuronate isomerase; Reviewed
Probab=43.02 E-value=9.1 Score=20.77 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHCC-----HHHH--------HHHHHHCCCCEEEE
Q ss_conf 1764248886465068-----8999--------99999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDFDED-----RHNV--------IMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f~~d-----~d~v--------i~ra~~~gV~~~i~ 35 (46)
|||-||||+-..+.+| +-++ -.-++.+||.-=.+
T Consensus 29 IidyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mrs~GV~e~~i 75 (466)
T PRK02925 29 IIDYHCHLDPKEIAENKPFKNLTELWLKGDHYKWRAMRSNGVDEELI 75 (466)
T ss_pred EECCCCCCCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHC
T ss_conf 87988895989982678999989983468629999999859999881
No 77
>PRK09228 guanine deaminase; Provisional
Probab=40.73 E-value=36 Score=17.40 Aligned_cols=17 Identities=0% Similarity=0.014 Sum_probs=11.7
Q ss_pred HHHHHHCCCCEEEEEEE
Q ss_conf 99999869988999643
Q 537021.9.peg.9 22 IMRAHQANVLKMIAIAI 38 (46)
Q Consensus 22 i~ra~~~gV~~~i~v~~ 38 (46)
+..+..+||+.++..++
T Consensus 120 ~~e~l~~GvTTv~~~~~ 136 (429)
T PRK09228 120 LDELLRNGTTTALVFGT 136 (429)
T ss_pred HHHHHHCCCCEEEECCC
T ss_conf 99998679718996035
No 78
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=40.69 E-value=23 Score=18.50 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9999999986998899964330
Q 537021.9.peg.9 19 HNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 19 d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
..+++.|+++||.+++.++||-
T Consensus 106 ~nlleaa~~~~Vkk~V~iSTDk 127 (324)
T TIGR03589 106 QNVIDAAIDNGVKRVVALSTDK 127 (324)
T ss_pred HHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999998855543178622688
No 79
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=40.34 E-value=36 Score=17.37 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=26.2
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 917642488864650688999999998699889996
Q 537021.9.peg.9 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 1 MliDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+++|.|+|-. ++=+...-+...+|...|-+.+.+.
T Consensus 5 ~fyDl~vh~~-pdG~~t~~ela~~A~~lGy~~iait 39 (237)
T PRK00912 5 KFYDLNVHPV-PDGYDTVLELAEEASHLGFSGICLS 39 (237)
T ss_pred CCEECCCCCC-CCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 5144256777-8987479999999998698689980
No 80
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=39.67 E-value=36 Score=17.42 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=26.5
Q ss_pred EECCCCCHHH-HCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 4248886465-0688999999998699889996433
Q 537021.9.peg.9 5 THCHFLLPDF-DEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 5 tHcHL~~~~f-~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
.+.-+.|..+ ..++++.++...+.|+++++++-.-
T Consensus 33 ~~v~~~f~e~~~P~i~eai~~l~~~G~~~ivvvP~~ 68 (101)
T cd03409 33 FPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred CCEEHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 824143797719999999999997698679998643
No 81
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=39.35 E-value=22 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=16.4
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCC
Q ss_conf 76424888646506889999999986998
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVL 31 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~ 31 (46)
+|-||||+- .-..+.+++.|+++|+.
T Consensus 5 ~eLH~HL~G---si~~~tl~~la~~~~~~ 30 (325)
T cd01320 5 AELHLHLDG---SLRPETILELAKKNGIT 30 (325)
T ss_pred HHHHCCCCC---CCCHHHHHHHHHHCCCC
T ss_conf 444407778---88999999999971999
No 82
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=39.25 E-value=24 Score=18.44 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCHHHH--CCHHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 864650--68899999999869988999643303200
Q 537021.9.peg.9 10 LLPDFD--EDRHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 10 ~~~~f~--~d~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
..+.|. ++--+.|.+|+++| .+++.|||++-++|
T Consensus 248 H~E~~~I~~~t~~~In~ak~~g-~RViAVGTT~vRaL 283 (366)
T PRK01424 248 HTEYCSITPETAEIINKAKQEG-RRIIAVGTTTLRTL 283 (366)
T ss_pred CCEEEEECHHHHHHHHHHHHCC-CCEEEEECCHHHHH
T ss_conf 4668997999999999998718-92899945168878
No 83
>TIGR01430 aden_deam adenosine deaminase; InterPro: IPR006330 This family includes the experimentally verified adenosine deaminases of mammals and Escherichia coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. ; GO: 0004000 adenosine deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=37.07 E-value=28 Score=18.04 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=17.0
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCC
Q ss_conf 76424888646506889999999986998
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVL 31 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~ 31 (46)
++=||||+- .-..+-++.-|+.+||.
T Consensus 4 ~ELH~HleG---~~~P~l~l~la~k~gi~ 29 (346)
T TIGR01430 4 AELHLHLEG---SLRPELLLELAQKNGIP 29 (346)
T ss_pred CCCCCCCCC---CCCHHHHHHHHHHCCCC
T ss_conf 310157432---55678899888643898
No 84
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=37.01 E-value=21 Score=18.71 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=11.1
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999999869988999
Q 537021.9.peg.9 19 HNVIMRAHQANVLKMIA 35 (46)
Q Consensus 19 d~vi~ra~~~gV~~~i~ 35 (46)
+..+.+++++|++....
T Consensus 73 ~~~~~~~~~~gvt~~~~ 89 (359)
T cd01309 73 DEAFKRARAGGVTTVQV 89 (359)
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 18999999749449997
No 85
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.74 E-value=31 Score=17.78 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=21.9
Q ss_pred HHHHCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 4650688999999998699889996433
Q 537021.9.peg.9 12 PDFDEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 12 ~~f~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
.+|....++.+++|+++||..+++|---
T Consensus 87 N~~~~g~e~F~~~~~~~GvdGvIipDLP 114 (247)
T PRK13125 87 EDYVGSLDDLLNTAKEVGARGVLFPDLL 114 (247)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999769999999998599758833888
No 86
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=36.71 E-value=36 Score=17.43 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=24.3
Q ss_pred EEEEECCCCCHHHH--CCHHHHHHHHHHCCCCEEEE
Q ss_conf 17642488864650--68899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDFD--EDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f~--~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||.|.|+..+-+. +++..--+.|..-|++.++.
T Consensus 55 ~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~d 90 (430)
T COG0044 55 LVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVD 90 (430)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 756677338998413556876999997589269997
No 87
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=36.52 E-value=31 Score=17.73 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=19.2
Q ss_pred HCCHHHH---HHHHHHCCCCEEEEEEEE
Q ss_conf 0688999---999998699889996433
Q 537021.9.peg.9 15 DEDRHNV---IMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 15 ~~d~d~v---i~ra~~~gV~~~i~v~~~ 39 (46)
|..|+|| |+.||++||.-|++.|-+
T Consensus 465 DPPR~EV~~ai~~CR~AGIrVImITGD~ 492 (800)
T TIGR01116 465 DPPRPEVADAIEKCREAGIRVIMITGDN 492 (800)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9481689999998873797899984798
No 88
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=36.45 E-value=14 Score=19.67 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHHHCC-----HH-------HHHH-HHHHCCCCEEEEEE
Q ss_conf 1764248886465068-----89-------9999-99986998899964
Q 537021.9.peg.9 2 LINTHCHFLLPDFDED-----RH-------NVIM-RAHQANVLKMIAIA 37 (46)
Q Consensus 2 liDtHcHL~~~~f~~d-----~d-------~vi~-ra~~~gV~~~i~v~ 37 (46)
|||-||||.-..+.++ +- -.+. -.+.+||..-.+.|
T Consensus 27 IidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg 75 (463)
T COG1904 27 IIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG 75 (463)
T ss_pred EECCCCCCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHCCC
T ss_conf 3477679998999636789998997306508999999875970642589
No 89
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=36.23 E-value=21 Score=18.73 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.5
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 76424888646506889999999986998899964330
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
+|||.|+-.+| .++.|.++||+.++-=||-.
T Consensus 132 iDtHiHfI~Pq-------qi~~Al~sGiTtmiGGGtGp 162 (568)
T COG0804 132 IDTHIHFICPQ-------QIEEALASGITTMIGGGTGP 162 (568)
T ss_pred CCCEEEEECHH-------HHHHHHHCCCEEEECCCCCC
T ss_conf 32126886678-------89999863867886486687
No 90
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778 This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=35.58 E-value=11 Score=20.33 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=8.3
Q ss_pred EEEECCCCCHHHH
Q ss_conf 7642488864650
Q 537021.9.peg.9 3 INTHCHFLLPDFD 15 (46)
Q Consensus 3 iDtHcHL~~~~f~ 15 (46)
||.|+||+.+.-.
T Consensus 57 iD~HTHl~~~~~g 69 (466)
T TIGR02033 57 IDVHTHLEMPFGG 69 (466)
T ss_pred CCCCCCCCCCCCC
T ss_conf 4621000100368
No 91
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.53 E-value=15 Score=19.50 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.6
Q ss_pred EEEEECCCCCHH
Q ss_conf 176424888646
Q 537021.9.peg.9 2 LINTHCHFLLPD 13 (46)
Q Consensus 2 liDtHcHL~~~~ 13 (46)
|||.||||-+..
T Consensus 66 LID~HtHl~~~~ 77 (406)
T COG1228 66 LIDAHTHLGFGG 77 (406)
T ss_pred EECCCCCCCCCC
T ss_conf 551100415577
No 92
>pfam04909 Amidohydro_2 Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.
Probab=34.33 E-value=38 Score=17.28 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=24.3
Q ss_pred EEEECCCCCHH---------------HHCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 76424888646---------------50688999999998699889996433
Q 537021.9.peg.9 3 INTHCHFLLPD---------------FDEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 3 iDtHcHL~~~~---------------f~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
||+|+|+..+. .....+........+||.+.+.+...
T Consensus 1 ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 52 (270)
T pfam04909 1 IDAHAHLWDPGALDRLPLMDRRGYDPALASPADLLVLGAALGVARAVIVAAS 52 (270)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9260564358765668878766778888899999999898498349995487
No 93
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=34.00 E-value=40 Score=17.13 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=22.0
Q ss_pred CHHHH--CCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 64650--68899999999869988999643
Q 537021.9.peg.9 11 LPDFD--EDRHNVIMRAHQANVLKMIAIAI 38 (46)
Q Consensus 11 ~~~f~--~d~d~vi~ra~~~gV~~~i~v~~ 38 (46)
+|+|. +-|+.-+++.|+.||..+|++|=
T Consensus 71 ~~EFK~~evR~kA~~nLK~~GI~~LVViGG 100 (302)
T TIGR02482 71 CPEFKTEEVREKAVENLKKLGIEALVVIGG 100 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 854568789999999988748866899868
No 94
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.71 E-value=23 Score=18.48 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=23.2
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 06889999999986998899964330320
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
+.|+++..++.++.|+..+--|||++...
T Consensus 94 ~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~ 122 (128)
T cd02072 94 KQDFEDVEKRFKEMGFDRVFAPGTPPEEA 122 (128)
T ss_pred CCCHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 31048999999966968574998799999
No 95
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.87 E-value=26 Score=18.24 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 68899999999869988999643303200
Q 537021.9.peg.9 16 EDRHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 16 ~d~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
.|.++..++.++.||..+.-|||+++..+
T Consensus 99 ~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii 127 (137)
T PRK02261 99 HDFEEVEKKFKEMGFDRVFAPGTDLEEVI 127 (137)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf 78399999999779798879788999999
No 96
>PRK09061 D-glutamate deacylase; Validated
Probab=32.40 E-value=28 Score=18.06 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=15.9
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864650688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
+||.|+|.+..+ ... .+...||+..+.-
T Consensus 58 fID~HtH~~~~~--~~~-----~~~~~GvTT~v~~ 85 (496)
T PRK09061 58 FIDLHAHGQSLP--AYR-----MQAFDGVTTTLEL 85 (496)
T ss_pred CEEEEECCCCCC--CCH-----HHHCCCEEEEEEC
T ss_conf 004210689997--667-----8875996899974
No 97
>pfam00962 A_deaminase Adenosine/AMP deaminase.
Probab=30.76 E-value=32 Score=17.69 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=17.2
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCC
Q ss_conf 76424888646506889999999986998
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVL 31 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~ 31 (46)
+|-||||+. .-..+-+++-|+++|+.
T Consensus 5 vELH~HL~G---si~~~tl~ela~~~~~~ 30 (329)
T pfam00962 5 VDLHLHLDG---SMNPDTLLRLAKRKGII 30 (329)
T ss_pred HHHHCCCCC---CCCHHHHHHHHHHCCCC
T ss_conf 777648767---99999999999971999
No 98
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=30.70 E-value=38 Score=17.30 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=21.2
Q ss_pred EECCCCCHHHH-CCHHHHHHHHHHCCCCEEEE
Q ss_conf 42488864650-68899999999869988999
Q 537021.9.peg.9 5 THCHFLLPDFD-EDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 5 tHcHL~~~~f~-~d~d~vi~ra~~~gV~~~i~ 35 (46)
|=.||..-.+. +++.++++..++.||+++|.
T Consensus 76 ~v~HLtC~~~t~~e~~~~L~~y~~~Gi~~ilA 107 (302)
T TIGR00676 76 TVPHLTCIGSTREEIEEILREYRELGIRNILA 107 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 30000023689899999999998748867987
No 99
>pfam07969 Amidohydro_3 Amidohydrolase family.
Probab=30.66 E-value=12 Score=20.01 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=7.8
Q ss_pred EEEEECCCCC
Q ss_conf 1764248886
Q 537021.9.peg.9 2 LINTHCHFLL 11 (46)
Q Consensus 2 liDtHcHL~~ 11 (46)
+||+|+|+..
T Consensus 6 fID~H~H~~~ 15 (392)
T pfam07969 6 FVDPHTHLDG 15 (392)
T ss_pred EEHHHHCHHH
T ss_conf 1026559788
No 100
>PTZ00124 adenosine deaminase; Provisional
Probab=30.30 E-value=42 Score=17.00 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=14.2
Q ss_pred EEECCCCCHHHHCCHHHHHHHHHHCCCC
Q ss_conf 6424888646506889999999986998
Q 537021.9.peg.9 4 NTHCHFLLPDFDEDRHNVIMRAHQANVL 31 (46)
Q Consensus 4 DtHcHL~~~~f~~d~d~vi~ra~~~gV~ 31 (46)
+=||||+- .-..+-+++-|+++|+.
T Consensus 39 ELH~HLdG---slrp~tl~eLA~~~~i~ 63 (362)
T PTZ00124 39 ELHCHLDI---CFSVDFFIDIIRKYNEQ 63 (362)
T ss_pred HHHCCCCC---CCCHHHHHHHHHHHCCC
T ss_conf 87707628---88999999999981989
No 101
>PRK08418 chlorohydrolase; Provisional
Probab=28.97 E-value=17 Score=19.16 Aligned_cols=10 Identities=40% Similarity=0.786 Sum_probs=8.0
Q ss_pred EEEEECCCCC
Q ss_conf 1764248886
Q 537021.9.peg.9 2 LINTHCHFLL 11 (46)
Q Consensus 2 liDtHcHL~~ 11 (46)
|||+|+|+.+
T Consensus 60 lVNaH~Hl~~ 69 (407)
T PRK08418 60 FINAHVHLEF 69 (407)
T ss_pred CEECCCCCCC
T ss_conf 6050438120
No 102
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=28.73 E-value=38 Score=17.28 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHCCCC
Q ss_conf 6889999999986998
Q 537021.9.peg.9 16 EDRHNVIMRAHQANVL 31 (46)
Q Consensus 16 ~d~d~vi~ra~~~gV~ 31 (46)
.++|++|++|+++|+.
T Consensus 113 ~p~eeiv~~aqaAGyd 128 (136)
T TIGR01244 113 VPVEEIVRRAQAAGYD 128 (136)
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 9889999988643746
No 103
>PRK06846 deaminase; Validated
Probab=28.51 E-value=56 Score=16.32 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=6.4
Q ss_pred EEEEECCCCC
Q ss_conf 1764248886
Q 537021.9.peg.9 2 LINTHCHFLL 11 (46)
Q Consensus 2 liDtHcHL~~ 11 (46)
++|.|+|||-
T Consensus 69 fvd~H~HLDK 78 (410)
T PRK06846 69 FREMHIHLDK 78 (410)
T ss_pred CCCCCCCCCC
T ss_conf 6774067563
No 104
>TIGR02152 D_ribokin_bact ribokinase; InterPro: IPR011877 This entry describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family. ; GO: 0004747 ribokinase activity, 0006014 D-ribose metabolic process.
Probab=28.42 E-value=45 Score=16.84 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 89999999986998899964
Q 537021.9.peg.9 18 RHNVIMRAHQANVLKMIAIA 37 (46)
Q Consensus 18 ~d~vi~ra~~~gV~~~i~v~ 37 (46)
-.++++.|+++||+-+|+|+
T Consensus 146 v~~a~~~a~~~G~~viLNPA 165 (303)
T TIGR02152 146 VLEALKIAKKHGVKVILNPA 165 (303)
T ss_pred HHHHHHHHHHCCCCEEECCC
T ss_conf 99999999965898986688
No 105
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.13 E-value=64 Score=16.00 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHCCHHHHHHHHHHCCCCEEEEEEEEEHH
Q ss_conf 4650688999999998699889996433032
Q 537021.9.peg.9 12 PDFDEDRHNVIMRAHQANVLKMIAIAIKVIR 42 (46)
Q Consensus 12 ~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~~ 42 (46)
+-|....+..+++|+++||..+++|-.-++.
T Consensus 105 pi~~~Gie~F~~~~~~~GvdGlivpDLP~ee 135 (265)
T COG0159 105 PIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE 135 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 8877359999999997599879857898667
No 106
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.06 E-value=16 Score=19.36 Aligned_cols=10 Identities=50% Similarity=0.836 Sum_probs=8.2
Q ss_pred EEEEECCCCC
Q ss_conf 1764248886
Q 537021.9.peg.9 2 LINTHCHFLL 11 (46)
Q Consensus 2 liDtHcHL~~ 11 (46)
|||+|+|+.+
T Consensus 33 fVnaH~H~~~ 42 (381)
T cd01312 33 LINAHTHLEF 42 (381)
T ss_pred CCCHHHCHHH
T ss_conf 7215048544
No 107
>PRK06886 hypothetical protein; Validated
Probab=27.55 E-value=63 Score=16.02 Aligned_cols=31 Identities=3% Similarity=0.043 Sum_probs=12.6
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEE
Q ss_conf 7642488864650688999999998699889
Q 537021.9.peg.9 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKM 33 (46)
Q Consensus 3 iDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~ 33 (46)
+|-||+-..++-...++.+.++..+.|...=
T Consensus 178 vD~H~De~~dp~~~~le~la~~t~~~G~~GR 208 (328)
T PRK06886 178 CHVHVDQFNTPKEKETEQLCDKTIEHGMQGR 208 (328)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 4760189999117689999999999577997
No 108
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=27.34 E-value=58 Score=16.23 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=22.7
Q ss_pred CC--HHHHHHHHHHCCCCEEEEEEEEEHH
Q ss_conf 68--8999999998699889996433032
Q 537021.9.peg.9 16 ED--RHNVIMRAHQANVLKMIAIAIKVIR 42 (46)
Q Consensus 16 ~d--~d~vi~ra~~~gV~~~i~v~~~~~~ 42 (46)
.| ++..++++|+.|.+.++|+|=+.++
T Consensus 103 aDElIe~~~~~~kelGL~~vvC~GET~~~ 131 (244)
T TIGR00419 103 ADELIEKKVARLKELGLTSVVCTGETLEE 131 (244)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 57888999999986488279974576332
No 109
>pfam12257 DUF3608 Protein of unknown function (DUF3608). This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with pfam00610.
Probab=26.63 E-value=42 Score=17.05 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=27.3
Q ss_pred EEEECCCCCHHHH-CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 7642488864650-688999999998699889996
Q 537021.9.peg.9 3 INTHCHFLLPDFD-EDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 3 iDtHcHL~~~~f~-~d~d~vi~ra~~~gV~~~i~v 36 (46)
+|....+++++.- .=+.++++++++.|..+.++|
T Consensus 86 F~~~Gei~feK~vn~Fl~~lf~kWk~~~~~H~vTI 120 (281)
T pfam12257 86 FEENGEIMFHKLVNSLFPKIFKKWKDINTHHSITI 120 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 68786208999999999999998864478617999
No 110
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=26.57 E-value=54 Score=16.39 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 06889999999986998899964330320
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
++++.++++-+.+.|+..++...|++++.
T Consensus 221 ~~~l~~i~~~~~~~~idGii~tNTt~~r~ 249 (336)
T PRK05286 221 DEELDDIADLALEHGIDGIIATNTTLDRS 249 (336)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 78999999999981986899958867664
No 111
>CHL00194 ycf39 Ycf39; Provisional
Probab=25.59 E-value=71 Score=15.73 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCCEEEEEEE
Q ss_conf 9999999869988999643
Q 537021.9.peg.9 20 NVIMRAHQANVLKMIAIAI 38 (46)
Q Consensus 20 ~vi~ra~~~gV~~~i~v~~ 38 (46)
.+++.|+++||.+++-+|.
T Consensus 92 ~li~AAk~aGVkr~V~lS~ 110 (319)
T CHL00194 92 ALIEAAKAAKVKRFIFFSI 110 (319)
T ss_pred HHHHHHHHCCCCEEEEECC
T ss_conf 9999999849988999613
No 112
>PRK09358 adenosine deaminase; Provisional
Probab=25.50 E-value=39 Score=17.19 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=14.3
Q ss_pred EEECCCCCHHHHCCHHHHHHHHHHCCCC
Q ss_conf 6424888646506889999999986998
Q 537021.9.peg.9 4 NTHCHFLLPDFDEDRHNVIMRAHQANVL 31 (46)
Q Consensus 4 DtHcHL~~~~f~~d~d~vi~ra~~~gV~ 31 (46)
|-||||+. .-..+.+++.|+++|+.
T Consensus 13 ELH~HL~G---si~~etl~~la~~~~~~ 37 (333)
T PRK09358 13 ELHLHLDG---SLRPETILELARRNGID 37 (333)
T ss_pred HHHHCCCC---CCCHHHHHHHHHHCCCC
T ss_conf 98707768---88999999999982999
No 113
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.93 E-value=70 Score=15.78 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=21.8
Q ss_pred CCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 8886465068899999999869988999
Q 537021.9.peg.9 8 HFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 8 HL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
....+++..+..+++++|+++|+.-++.
T Consensus 98 ~~~~~~~~~~y~~li~~a~~~gi~vi~~ 125 (204)
T cd01830 98 PVTAEELIAGYRQLIRRAHARGIKVIGA 125 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7799999999999999999869979998
No 114
>PRK13126 consensus
Probab=24.80 E-value=74 Score=15.65 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=17.7
Q ss_pred HHHHCCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 465068899999999869988999643
Q 537021.9.peg.9 12 PDFDEDRHNVIMRAHQANVLKMIAIAI 38 (46)
Q Consensus 12 ~~f~~d~d~vi~ra~~~gV~~~i~v~~ 38 (46)
.+|....++.+++|+++||..+++|--
T Consensus 78 N~~~~g~~~f~~~~~~aGvdGlIipDL 104 (237)
T PRK13126 78 EDYAGSPAELFETAAEVGARGVLAPDL 104 (237)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 877656999999998749973883688
No 115
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=24.00 E-value=74 Score=15.65 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=24.6
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEEEEEHHE
Q ss_conf 06889999999986998899964330320
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAIAIKVIRT 43 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v~~~~~~s 43 (46)
++++.++++.+.++|+..++...|.+.+.
T Consensus 215 ~~~i~~i~~~~~~~g~dGvi~tNTt~~r~ 243 (327)
T cd04738 215 DEELEDIADVALEHGVDGIIATNTTISRP 243 (327)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 67899999999973997899958855542
No 116
>PRK07583 cytosine deaminase; Validated
Probab=23.88 E-value=62 Score=16.05 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=7.6
Q ss_pred EEEEECCCCC
Q ss_conf 1764248886
Q 537021.9.peg.9 2 LINTHCHFLL 11 (46)
Q Consensus 2 liDtHcHL~~ 11 (46)
|+|+|+|||-
T Consensus 77 fvd~H~HLDK 86 (437)
T PRK07583 77 FVDMHTHLDK 86 (437)
T ss_pred CCCCCCCCCC
T ss_conf 6673268778
No 117
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=23.07 E-value=62 Score=16.06 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=23.2
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 17642488864650688999999998699889996
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v 36 (46)
-+|+|-|+.. +..=++.+++-|++.|+..+-.+
T Consensus 126 HiD~H~hvh~--~P~v~~~~~~la~ey~ip~~r~p 158 (283)
T TIGR03473 126 HVNAHKHFHL--HPTVLSLILEIGREYGLRAVRLP 158 (283)
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHCCCEEECC
T ss_conf 3043320124--82699999999998299836435
No 118
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=22.97 E-value=80 Score=15.44 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=19.3
Q ss_pred HCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 0688999999998699889996433
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAIAIK 39 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v~~~ 39 (46)
......+++.|+++||.+++..|..
T Consensus 82 ~~~~~~~i~aA~~aGV~~iV~lS~~ 106 (285)
T TIGR03649 82 APPMIKFIDFARSKGVRRFVLLSAS 106 (285)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 7899999999998499889998303
No 119
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.77 E-value=81 Score=15.42 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=23.6
Q ss_pred HHHHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 46506889999999986998899964330
Q 537021.9.peg.9 12 PDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 12 ~~f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
..+..+.++.+++|.++|.+-++|++...
T Consensus 97 R~~~~E~~~~v~~a~~~gl~~I~Cv~~~~ 125 (223)
T PRK04302 97 RLRLADIEAAVERAKELGLESVVCTNNPE 125 (223)
T ss_pred HHHCCCHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 00032279999999986994899727399
No 120
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=22.44 E-value=67 Score=15.87 Aligned_cols=26 Identities=4% Similarity=0.142 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 8899999999869988999643303200
Q 537021.9.peg.9 17 DRHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 17 d~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
.--.+++.||+.| .+|+||.+..+|.
T Consensus 26 GHV~YL~~Ar~LG--D~LvVGvNSD~SV 51 (144)
T TIGR02199 26 GHVSYLQQARALG--DRLVVGVNSDASV 51 (144)
T ss_pred CHHHHHHHHHHHC--CEEEEEECCHHHH
T ss_conf 1376899999719--8668986170455
No 121
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.34 E-value=83 Score=15.37 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=18.7
Q ss_pred HCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 0688999999998699889996
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLKMIAI 36 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~~i~v 36 (46)
..++++++++.+++|++++..+
T Consensus 41 ~P~~e~vl~~L~~~g~k~V~L~ 62 (103)
T cd03413 41 YPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE
T ss_conf 5899999999997699869996
No 122
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=22.30 E-value=83 Score=15.36 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=21.4
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 5068899999999869988999643303
Q 537021.9.peg.9 14 FDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 14 f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
|....+..+++|+++||..+++|---.+
T Consensus 89 ~~~G~e~F~~~~~~~Gv~GviipDLP~e 116 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIPDLPPE 116 (242)
T ss_pred HHHCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 6528999999999759975870699957
No 123
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=22.07 E-value=49 Score=16.65 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEEHH
Q ss_conf 8999999998699889996433032
Q 537021.9.peg.9 18 RHNVIMRAHQANVLKMIAIAIKVIR 42 (46)
Q Consensus 18 ~d~vi~ra~~~gV~~~i~v~~~~~~ 42 (46)
+.+-|+.|.++||+.++.||=++++
T Consensus 343 F~D~Ie~aa~~GV~aIiQPGGSirD 367 (391)
T PRK07106 343 FGDNIERAHKSGVSYIAQPGGSIRD 367 (391)
T ss_pred CCHHHHHHHHCCCEEEECCCCCCCH
T ss_conf 7568999998599499879974150
No 124
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase; InterPro: IPR005771 Uridine 5'-triphosphate:glucose-1-phosphate uridylyltransferase (uridine diphosphoglucose pyrophosphorylase, 2.7.7.9 from EC) is responsible for the synthesis of UDP-glucose, a key compound in the biosynthesis of polysaccharides. Glucose is fermented through the glycolysis step to pyruvate, which in turn is converted to lactate. The glycolytic intermediate glucose 6-phosphate is converted to glucose 1-phosphate by phosphoglucomutase activity, and this metabolite is subsequently converted to UDP-glucose by UDP-glucose pyrophosphorylase (GalU) activity. ; GO: 0003983 UTP:glucose-1-phosphate uridylyltransferase activity, 0006011 UDP-glucose metabolic process.
Probab=21.98 E-value=80 Score=15.46 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEEHHEE
Q ss_conf 899999999869988999643303200
Q 537021.9.peg.9 18 RHNVIMRAHQANVLKMIAIAIKVIRTL 44 (46)
Q Consensus 18 ~d~vi~ra~~~gV~~~i~v~~~~~~sl 44 (46)
+.-+++.|-++|+..|+.|.=+-|+|+
T Consensus 35 IQY~VEEav~aGie~i~~VTGr~K~aI 61 (270)
T TIGR01099 35 IQYIVEEAVEAGIEDILIVTGRGKRAI 61 (270)
T ss_pred EHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 104579898648934799965885010
No 125
>PRK13139 consensus
Probab=21.95 E-value=84 Score=15.32 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=21.2
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 5068899999999869988999643303
Q 537021.9.peg.9 14 FDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 14 f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
|.-..+..+++|+++||..+++|---.+
T Consensus 105 ~~~G~e~F~~~~~~~Gv~GvIipDLP~e 132 (254)
T PRK13139 105 FKYGVERFIDEVADIGVKGLIVPDLPPE 132 (254)
T ss_pred HHCCHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 8709999999999759985864799978
No 126
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=21.92 E-value=65 Score=15.97 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.3
Q ss_pred CCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 886465068899999999869988999643303
Q 537021.9.peg.9 9 FLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 9 L~~~~f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
.++.+-++.+..-+++|+++|.+-++|+|-.++
T Consensus 101 ~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~ 133 (251)
T COG0149 101 LYFGETDELIAKKVKAAKEAGLTPILCVGETLE 133 (251)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 435634699999999999889968998589777
No 127
>PRK13113 consensus
Probab=21.63 E-value=83 Score=15.36 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=21.8
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 5068899999999869988999643303
Q 537021.9.peg.9 14 FDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 14 f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
|.-..+..+++|+++||..+++|---.+
T Consensus 107 ~~~G~e~F~~~~~~~GvdGvIipDLP~e 134 (263)
T PRK13113 107 YSRGVDRFLAEAKEAGIDGLIVVDLPPE 134 (263)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 8856999999987779436971799978
No 128
>PRK07945 hypothetical protein; Provisional
Probab=21.15 E-value=88 Score=15.22 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=8.9
Q ss_pred HHHHCCHHHHHHHHHHCCC
Q ss_conf 4650688999999998699
Q 537021.9.peg.9 12 PDFDEDRHNVIMRAHQANV 30 (46)
Q Consensus 12 ~~f~~d~d~vi~ra~~~gV 30 (46)
++++-|+++|++.|+++|+
T Consensus 241 ~~~~vD~e~V~~aaae~gt 259 (335)
T PRK07945 241 PESKFDAEAVFTACREHGT 259 (335)
T ss_pred CCCCCCHHHHHHHHHHHCC
T ss_conf 8765799999999999797
No 129
>PRK13138 consensus
Probab=21.01 E-value=88 Score=15.21 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.0
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 506889999999986998899964330
Q 537021.9.peg.9 14 FDEDRHNVIMRAHQANVLKMIAIAIKV 40 (46)
Q Consensus 14 f~~d~d~vi~ra~~~gV~~~i~v~~~~ 40 (46)
|.-..+..+++|+++||..+++|---.
T Consensus 103 ~~~G~e~F~~~~~~~GvdGlIipDLP~ 129 (264)
T PRK13138 103 FSMGLEAFTERAKNSGIQGLIIPDLPF 129 (264)
T ss_pred HHHCHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 884899999999876977585368986
No 130
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=20.91 E-value=67 Score=15.88 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=25.9
Q ss_pred EEEECCCCCHHHH-CCHHHHHHHHHHCCCCEEEE
Q ss_conf 7642488864650-68899999999869988999
Q 537021.9.peg.9 3 INTHCHFLLPDFD-EDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 3 iDtHcHL~~~~f~-~d~d~vi~ra~~~gV~~~i~ 35 (46)
++|==||+.-+.. +.+|.-++||+++|++.+|.
T Consensus 66 ~et~MHLTCTN~~~e~ID~AL~~~~~~G~~NiLA 99 (312)
T TIGR00677 66 VETCMHLTCTNMPIEMIDDALERAKSNGIQNILA 99 (312)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 5530035578975788999999998656533400
No 131
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=20.60 E-value=90 Score=15.16 Aligned_cols=27 Identities=4% Similarity=0.108 Sum_probs=21.6
Q ss_pred CHHHH-CCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 64650-6889999999986998899964
Q 537021.9.peg.9 11 LPDFD-EDRHNVIMRAHQANVLKMIAIA 37 (46)
Q Consensus 11 ~~~f~-~d~d~vi~ra~~~gV~~~i~v~ 37 (46)
+-+|. .++.+.+.++.+.|+++++++=
T Consensus 38 fmElaePsi~e~l~~~v~~G~~~IiVvP 65 (125)
T cd03415 38 YNEYAEPNWRDLLNELLSEGYGHIIIAL 65 (125)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 5110699889999999984998199995
No 132
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=20.49 E-value=91 Score=15.14 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=28.6
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 1764248886465068899999999869988999643
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~v~~ 38 (46)
++|-|-|+|-.. ++.-+++.+-+.+|=+.++.+.-
T Consensus 7 v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nl 41 (285)
T COG1831 7 VTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNL 41 (285)
T ss_pred EECCEEEECCCC--CCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 002504326776--74799999999748957998603
No 133
>pfam08671 SinI Anti-repressor SinI. SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA.
Probab=20.48 E-value=42 Score=17.03 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred HCCHHHHHHHHHHCCCCE
Q ss_conf 068899999999869988
Q 537021.9.peg.9 15 DEDRHNVIMRAHQANVLK 32 (46)
Q Consensus 15 ~~d~d~vi~ra~~~gV~~ 32 (46)
|.++-+.|..|++.|+++
T Consensus 2 D~EW~~Li~EA~~~Gis~ 19 (30)
T pfam08671 2 DQEWVQLIKEAMEAGLSK 19 (30)
T ss_pred CHHHHHHHHHHHHCCCCH
T ss_conf 579999999999814679
No 134
>PRK13127 consensus
Probab=20.33 E-value=91 Score=15.12 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=22.6
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 5068899999999869988999643303
Q 537021.9.peg.9 14 FDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 14 f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
|.-..+..+++|+++||..+++|---.+
T Consensus 100 ~~~G~e~F~~~~~~~GvdGlIipDLP~e 127 (262)
T PRK13127 100 YRYGVEKFVKKAAEAGVSGLIIPDLPVE 127 (262)
T ss_pred HHCCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 7608999999998759976996699978
No 135
>PRK13140 consensus
Probab=20.23 E-value=92 Score=15.11 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=21.8
Q ss_pred HHCCHHHHHHHHHHCCCCEEEEEEEEEH
Q ss_conf 5068899999999869988999643303
Q 537021.9.peg.9 14 FDEDRHNVIMRAHQANVLKMIAIAIKVI 41 (46)
Q Consensus 14 f~~d~d~vi~ra~~~gV~~~i~v~~~~~ 41 (46)
|.-..++.+++|+++||..+++|---.+
T Consensus 103 ~~~G~e~F~~~~~~~GvdGlIipDLP~e 130 (257)
T PRK13140 103 MQYGFEKFCKKCAETGIDGVIIPDLPFD 130 (257)
T ss_pred HHHCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 8517999999999849986983599856
No 136
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=20.13 E-value=27 Score=18.08 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=16.7
Q ss_pred EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEE
Q ss_conf 1764248886465068899999999869988999
Q 537021.9.peg.9 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIA 35 (46)
Q Consensus 2 liDtHcHL~~~~f~~d~d~vi~ra~~~gV~~~i~ 35 (46)
+||+|+|+....+...- ...+...|++..+.
T Consensus 55 ~ID~H~H~~~~~~~~~~---~~~~~~~gvtt~~~ 85 (415)
T cd01297 55 FIDVHTHYDGQVFWDPD---LRPSSRQGVTTVVL 85 (415)
T ss_pred HHHHHCCCCCCCCCCCC---CHHHHHCCEEEEEE
T ss_conf 40564698753457845---15687588889996
Done!