RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.91_1
         (46 letters)



>gnl|CDD|30433 COG0084, TatD, Mg-dependent DNase [DNA replication,
          recombination, and repair].
          Length = 256

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 1  MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIK 39
          MLI+THCH    +FDEDR  VI RA +A V KM+ +   
Sbjct: 2  MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTD 40


>gnl|CDD|30053 cd01310, TatD_DNAse, TatD like proteins;  E.coli TatD is a
          cytoplasmic protein, shown to have magnesium dependent
          DNase activity..
          Length = 251

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 2  LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40
          LI+THCH   P FD DR +V+ RA +A V+K+I +   +
Sbjct: 1  LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDL 39


>gnl|CDD|144567 pfam01026, TatD_DNase, TatD related DNase.  This family of
          proteins are related to a large superfamily of
          metalloenzymes. TatD, a member of this family has been
          shown experimentally to be a DNase enzyme.
          Length = 255

 Score = 34.9 bits (81), Expect = 0.005
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 3  INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37
          I+ HCH     FD DR  VI RA +A V  ++ + 
Sbjct: 1  IDAHCHLDFKKFDGDRDEVIERAREAGVTAVVVVG 35


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.338    0.145    0.442 

Gapped
Lambda     K      H
   0.267   0.0745    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 554,275
Number of extensions: 17819
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 4
Length of query: 46
Length of database: 6,263,737
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,853,166
Effective search space: 158035482
Effective search space used: 158035482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (23.4 bits)