RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.91_1 (46 letters) >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:) Length = 264 Score = 38.1 bits (87), Expect = 4e-04 Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 + + + F +DR +V+ A A V ++ Sbjct: 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGT 41 >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} (A:) Length = 268 Score = 37.3 bits (85), Expect = 7e-04 Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 ++TH H FD+DR+ VI + N+ ++ + + Sbjct: 12 HXVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGV 49 >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrolase, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens str} (A:73-340) Length = 268 Score = 36.9 bits (84), Expect = 0.001 Identities = 3/37 (8%), Positives = 10/37 (27%), Gaps = 1/37 (2%) Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 ++ H H + + + V ++ Sbjct: 1 WVDLHVH-IWHGGTDISIRPSECGAERGVTTLVDAGS 36 >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural genomics, PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:) Length = 265 Score = 35.8 bits (81), Expect = 0.002 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 LI+TH H +D+D VI RA +A V + + Sbjct: 2 LIDTHVHLNDEQYDDDLSEVITRAREAGVDRXFVVGF 38 >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} (A:) Length = 259 Score = 34.3 bits (77), Expect = 0.006 Identities = 17/37 (45%), Positives = 20/37 (54%) Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 I+THCHF P F D + RA QA V K+I A Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT 41 >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} (A:) Length = 325 Score = 33.8 bits (76), Expect = 0.009 Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 10/48 (20%) Query: 1 MLINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38 I+ + ++ +ED V+ RA + + +I + Sbjct: 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSG 74 >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789} (A:) Length = 401 Score = 33.0 bits (74), Expect = 0.015 Identities = 1/37 (2%), Positives = 3/37 (8%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37 + L + Sbjct: 68 AIELVSSVKDLSPLKLYHTIGVHPCCVNEFADASQGD 104 Score = 29.9 bits (66), Expect = 0.11 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 10/47 (21%) Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38 + + P F D ++ RA Q +V + Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGS 60 >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research center for structural genomics, NYSGXRC, structural genomics, PSI; 1.90A {Escherichia coli K12} (A:) Length = 265 Score = 32.3 bits (72), Expect = 0.023 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 1 MLINTHCHFLLPDFD---EDRHNVIMRAHQANVLKMIAIAIKV 40 L+++HCH D++ +D +V+ +A +V +A+A + Sbjct: 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL 44 >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} (A:) Length = 254 Score = 31.4 bits (70), Expect = 0.041 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 LI+ H H L + RA + L ++++ Sbjct: 2 SLIDFHVHLDLYPDPV----AVARACEERQLTVLSVTT 35 >2qpx_A Predicted metal-dependent hydrolase of the TIM- barrel fold; YP_805737.1, putative metal-dependent hydrolase, structural genomics; HET: KCX MSE; 1.40A {Lactobacillus casei atcc 334} (A:) Length = 376 Score = 29.2 bits (64), Expect = 0.18 Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIA 37 +LI+T P D D+ ++ + ++ A Sbjct: 98 LLIDTGFVPDDPILDLDQTAELVGIPVKAIYRLETHA 134 >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} (A:63-324) Length = 262 Score = 28.8 bits (63), Expect = 0.28 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 2 LINTHCHFLLPDFDEDR--HNVIMRAHQANVLKMIAIAI 38 L++TH H D+ + + I A V MI+ Sbjct: 1 LLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAGS 39 >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} (A:) Length = 364 Score = 27.7 bits (60), Expect = 0.60 Identities = 1/40 (2%), Positives = 9/40 (22%), Gaps = 2/40 (5%) Query: 1 MLINTHCHFLLPDFDEDR--HNVIMRAHQANVLKMIAIAI 38 + + + D+ + + ++ Sbjct: 69 LRQDPFVNKHNIALDDLDLAIAEVKQFAAVGGRSIVDPTC 108 >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* (A:) Length = 339 Score = 26.2 bits (56), Expect = 1.4 Identities = 2/38 (5%), Positives = 5/38 (13%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 T F + ++ Sbjct: 48 AGDVTLGPFDHAAALASCTETARALLARGIQTVVDATP 85 >3f4c_A Organophosphorus hydrolase; alpha-beta barrel, amidohydrolase, binuclear metal enzyme, glycerol-bound; HET: KCX; 2.07A {Geobacillus stearothermophilus 10} PDB: 3f4d_A* (A:) Length = 332 Score = 25.9 bits (55), Expect = 2.0 Identities = 4/53 (7%), Positives = 10/53 (18%), Gaps = 16/53 (30%) Query: 2 LINTHCHFLL----------------PDFDEDRHNVIMRAHQANVLKMIAIAI 38 H HFL + + + + ++ Sbjct: 19 KTLIHEHFLFGYPGFQGDVTRGTFREDEALRVAVEAAEKMKRHGIQTVVDPTP 71 >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} (A:) Length = 261 Score = 25.7 bits (55), Expect = 2.4 Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 5/36 (13%) Query: 3 INTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 ++H H F +++ + + ++ ++A Sbjct: 3 FDSHLHSEGLGFS-----ELVKLKENGIKEVCSLAF 33 >2qah_A 2-pyrone-4,6-dicarboxylic acid hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Sphingomonas paucimobilis} (A:) Length = 303 Score = 25.0 bits (53), Expect = 3.5 Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 13/50 (26%) Query: 2 LINTHCHFLLPDF-------------DEDRHNVIMRAHQANVLKMIAIAI 38 I+ HCH P D + + + + Sbjct: 27 AIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQA 76 >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putative; TIM-barrel protein., structural genomics, PSI, protein structure initiative; 2.61A {Pseudomonas putida KT2440} (A:) Length = 288 Score = 25.1 bits (53), Expect = 3.6 Identities = 4/48 (8%), Positives = 11/48 (22%), Gaps = 12/48 (25%) Query: 2 LINTHCHFLLPDF------------DEDRHNVIMRAHQANVLKMIAIA 37 I++H H D + + + + + Sbjct: 14 AIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQ 61 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.338 0.145 0.442 Gapped Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 353,668 Number of extensions: 9224 Number of successful extensions: 105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 26 Length of query: 46 Length of database: 4,956,049 Length adjustment: 18 Effective length of query: 28 Effective length of database: 4,347,559 Effective search space: 121731652 Effective search space used: 121731652 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 50 (23.9 bits)