RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.91_1 (46 letters) >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Length = 268 Score = 44.4 bits (104), Expect = 5e-06 Identities = 10/37 (27%), Positives = 21/37 (56%) Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 +++TH H FD+DR+ VI + N+ ++ + + Sbjct: 13 MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGV 49 >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural genomics, PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Length = 265 Score = 44.3 bits (103), Expect = 6e-06 Identities = 15/38 (39%), Positives = 21/38 (55%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 MLI+TH H +D+D VI RA +A V +M + Sbjct: 1 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGF 38 >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Length = 264 Score = 42.2 bits (98), Expect = 2e-05 Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 + + + F +DR +V+ A A V ++ Sbjct: 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGT 41 >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Length = 259 Score = 40.0 bits (92), Expect = 1e-04 Identities = 17/38 (44%), Positives = 20/38 (52%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 I+THCHF P F D + RA QA V K+I A Sbjct: 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT 41 >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Length = 301 Score = 38.5 bits (89), Expect = 4e-04 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 10/47 (21%) Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38 I+ + P F +D +VI RA + V K + Sbjct: 3 FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGG 49 >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research center for structural genomics, NYSGXRC, structural genomics, PSI; 1.90A {Escherichia coli K12} SCOP: c.1.9.12 Length = 265 Score = 36.5 bits (83), Expect = 0.001 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 1 MLINTHCHFLLPDFD---EDRHNVIMRAHQANVLKMIAIAI 38 L+++HCH D++ +D +V+ +A +V +A+A Sbjct: 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVAT 42 >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789} Length = 401 Score = 35.0 bits (79), Expect = 0.004 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 10/47 (21%) Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38 + + P F D ++ RA Q +V + Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGS 60 >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Length = 325 Score = 31.4 bits (70), Expect = 0.046 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 10/47 (21%) Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38 I+ + ++ +ED V+ RA + + +I + Sbjct: 28 FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSG 74 >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254 Score = 31.2 bits (69), Expect = 0.052 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40 LI+ H H D D + RA + L ++++ Sbjct: 2 SLIDFHVHL---DLYPDP-VAVARACEERQLTVLSVTTTP 37 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 0.13 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 9/28 (32%) Query: 23 MRAHQANVLKMIA------IAIKVIRTL 44 ++ QA+ LK+ A +AIK T+ Sbjct: 22 LKKLQAS-LKLYADDSAPALAIKA--TM 46 >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} Length = 261 Score = 29.2 bits (64), Expect = 0.20 Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38 M ++H H F E +++ + + ++ ++A Sbjct: 1 MYFDSHLHSEGLGFSE-----LVKLKENGIKEVCSLAF 33 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.4 bits (58), Expect = 1.6 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 5/34 (14%) Query: 11 LPDFD-EDRHNVIMRAHQANVLKMI--AIAIKVI 41 +P +D D + +R ++ + I I + Sbjct: 457 IPVYDTFDGSD--LRVLSGSISERIVDCIIRLPV 488 >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* Length = 455 Score = 24.7 bits (53), Expect = 5.6 Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 6 HCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIK 39 H F L N + R + +++ +A A++ Sbjct: 129 HDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVR 162 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.338 0.145 0.442 Gapped Lambda K H 0.267 0.0461 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 399,428 Number of extensions: 10796 Number of successful extensions: 143 Number of sequences better than 10.0: 1 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 21 Length of query: 46 Length of database: 5,693,230 Length adjustment: 19 Effective length of query: 27 Effective length of database: 5,232,594 Effective search space: 141280038 Effective search space used: 141280038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 50 (23.7 bits)