RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.91_1
(46 letters)
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667,
JCSG, PSI, protein structure initiative, joint center
for structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.1.9.12
Length = 268
Score = 44.4 bits (104), Expect = 5e-06
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 2 LINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
+++TH H FD+DR+ VI + N+ ++ + +
Sbjct: 13 MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGV 49
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural genomics, PSI, protein structure initiative;
2.20A {Staphylococcus aureus subsp}
Length = 265
Score = 44.3 bits (103), Expect = 6e-06
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
MLI+TH H +D+D VI RA +A V +M +
Sbjct: 1 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGF 38
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 42.2 bits (98), Expect = 2e-05
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
+ + + F +DR +V+ A A V ++
Sbjct: 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGT 41
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 40.0 bits (92), Expect = 1e-04
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
I+THCHF P F D + RA QA V K+I A
Sbjct: 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT 41
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo
sapiens}
Length = 301
Score = 38.5 bits (89), Expect = 4e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38
I+ + P F +D +VI RA + V K +
Sbjct: 3 FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGG 49
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX
research center for structural genomics, NYSGXRC,
structural genomics, PSI; 1.90A {Escherichia coli K12}
SCOP: c.1.9.12
Length = 265
Score = 36.5 bits (83), Expect = 0.001
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1 MLINTHCHFLLPDFD---EDRHNVIMRAHQANVLKMIAIAI 38
L+++HCH D++ +D +V+ +A +V +A+A
Sbjct: 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVAT 42
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
structure initiative; 1.50A {Saccharomyces cerevisiae
YJM789}
Length = 401
Score = 35.0 bits (79), Expect = 0.004
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 10/47 (21%)
Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38
+ + P F D ++ RA Q +V +
Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGS 60
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infectious disease, dysentery,
liver abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 31.4 bits (70), Expect = 0.046
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 2 LINTHCHFLLPDF----------DEDRHNVIMRAHQANVLKMIAIAI 38
I+ + ++ +ED V+ RA + + +I +
Sbjct: 28 FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSG 74
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 31.2 bits (69), Expect = 0.052
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40
LI+ H H D D + RA + L ++++
Sbjct: 2 SLIDFHVHL---DLYPDP-VAVARACEERQLTVLSVTTTP 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 0.13
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 9/28 (32%)
Query: 23 MRAHQANVLKMIA------IAIKVIRTL 44
++ QA+ LK+ A +AIK T+
Sbjct: 22 LKKLQAS-LKLYADDSAPALAIKA--TM 46
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 29.2 bits (64), Expect = 0.20
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 1 MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAI 38
M ++H H F E +++ + + ++ ++A
Sbjct: 1 MYFDSHLHSEGLGFSE-----LVKLKENGIKEVCSLAF 33
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 26.4 bits (58), Expect = 1.6
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 11 LPDFD-EDRHNVIMRAHQANVLKMI--AIAIKVI 41
+P +D D + +R ++ + I I +
Sbjct: 457 IPVYDTFDGSD--LRVLSGSISERIVDCIIRLPV 488
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD;
2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A*
2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A*
1hl8_A* 1odu_A*
Length = 455
Score = 24.7 bits (53), Expect = 5.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 6 HCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIK 39
H F L N + R + +++ +A A++
Sbjct: 129 HDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVR 162
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.338 0.145 0.442
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 399,428
Number of extensions: 10796
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 21
Length of query: 46
Length of database: 5,693,230
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,232,594
Effective search space: 141280038
Effective search space used: 141280038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.7 bits)