BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.91_1
         (46 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.91_1 
          Length = 46

 Score = 94.0 bits (232), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRTLFL 46
          MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRTLFL
Sbjct: 1  MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKVIRTLFL 46


>gi|254780215|ref|YP_003064628.1| hypothetical protein CLIBASIA_00500 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 262

 Score = 79.7 bits (195), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 39/40 (97%)

Query: 1  MLINTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIKV 40
          MLI+THCH LLPDFDEDRH+VIMRAHQANVLKMIAIAIKV
Sbjct: 1  MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKV 40


>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 554

 Score = 22.3 bits (46), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 8   HFLLPDF-DEDRHNVIMRAHQANVLKMIAIAIKV 40
           HF LPDF D   H ++        LK  A A+ V
Sbjct: 103 HFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGV 136


>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score = 21.2 bits (43), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 4   NTHCHFLLPDFDEDRHNVIMRAHQANVLKMIAIAIK 39
           +T  H LLP F+   H + +   + ++ K I+IAI+
Sbjct: 375 STKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.338    0.145    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,961
Number of Sequences: 1233
Number of extensions: 589
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 46
length of database: 328,796
effective HSP length: 19
effective length of query: 27
effective length of database: 305,369
effective search space:  8244963
effective search space used:  8244963
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 31 (16.5 bits)