Query         537021.9.peg.911_1
Match_columns 47
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 06:25:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_911.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG4882 Predicted aminopeptida  21.9      52  0.0013   15.9   1.6   16    8-23    156-171 (486)
  2 TIGR01121 D_amino_aminoT D-ami  18.4      74  0.0019   15.2   1.8   40    5-44     45-86  (278)
  3 pfam08593 MUG2_C Meiotically u  15.5      30 0.00077   17.0  -0.8   32    2-42     45-78  (94)
  4 pfam03614 Flag1_repress Repres  15.4      79   0.002   15.1   1.3   14   10-23     61-74  (165)
  5 pfam04772 Flu_B_M2 Influenza B  13.0 1.2E+02  0.0031   14.2   1.7   14   23-36      8-21  (109)
  6 pfam08655 DASH_Ask1 DASH compl  11.7      49  0.0013   16.0  -0.6   31    2-32     29-59  (66)
  7 TIGR00583 mre11 DNA repair pro  11.2   1E+02  0.0026   14.6   0.8   10   16-25    375-384 (424)
  8 pfam06123 CreD Inner membrane   10.6 1.2E+02   0.003   14.3   1.0   13   21-33    298-310 (430)
  9 pfam04988 AKAP95 A-kinase anch  10.2 1.6E+02  0.0041   13.6   1.6   17   25-41    108-124 (165)
 10 PRK11715 hypothetical protein;  10.1 1.2E+02  0.0031   14.2   1.0   11   21-31    295-305 (427)

No 1  
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=21.93  E-value=52  Score=15.92  Aligned_cols=16  Identities=50%  Similarity=0.688  Sum_probs=13.2

Q ss_pred             HHHHCCCCEEEEEEEH
Q ss_conf             9851466458898504
Q 537021.9.peg.9    8 ERYAKGANRIRLKVKY   23 (47)
Q Consensus         8 eryakganrirlkvky   23 (47)
                      -+|++|+.|+||++.-
T Consensus       156 ~~y~~~~~rvrl~vD~  171 (486)
T COG4882         156 SRYAEEAGRVRLWVDA  171 (486)
T ss_pred             CHHHCCCEEEEEEEEC
T ss_conf             1122446069999851


No 2  
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase; InterPro: IPR005784    D-amino acid aminotransferase (2.6.1.21 from EC) catalyzes transamination between various D-amino acids and alpha-keto acids. This enzyme is a homodimer. The pyridoxal phosphate attachment site is a Lys in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family .; GO: 0008483 transaminase activity, 0008152 metabolic process.
Probab=18.43  E-value=74  Score=15.20  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=33.7

Q ss_pred             HHHHHHHCCCCEEEEEEEHHHHHH--HHHHHHHCCCCCCCCE
Q ss_conf             989985146645889850479899--9997633010000101
Q 537021.9.peg.9    5 SQVERYAKGANRIRLKVKYSILFL--ILSALHLKNKVRYGAV   44 (47)
Q Consensus         5 sqveryakganrirlkvkysilfl--ilsalhlknkvrygav   44 (47)
                      -..+|.-+.|..|+|..-||.--|  .|..|--+|.++-|.|
T Consensus        45 EHi~Rly~SA~~I~l~lpys~~~L~~~L~~Lv~~N~~~~G~v   86 (278)
T TIGR01121        45 EHIDRLYASAAEIRLDLPYSKEELHELLHELVEENNINTGGV   86 (278)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             789999851877413447677899999999998628657957


No 3  
>pfam08593 MUG2_C Meiotically up-regulated C-terminal. This is the C-terminal part of some meiotically up-regulated gene products from fungi. The actual function is not yet known. The proteins are likely to be cell-surface glycoproteins and may bes situated close to telomeres, hence their being expressed during meiosis.
Probab=15.46  E-value=30  Score=17.01  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             HHHH--HHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCC
Q ss_conf             0799--8998514664588985047989999976330100001
Q 537021.9.peg.9    2 EIVS--QVERYAKGANRIRLKVKYSILFLILSALHLKNKVRYG   42 (47)
Q Consensus         2 eivs--qveryakganrirlkvkysilflilsalhlknkvryg   42 (47)
                      ++.|  |+-||-.|-+         |-|---+.+++|++.||.
T Consensus        45 d~Ls~~qc~~yL~Gy~---------v~~~~neti~lK~rL~da   78 (94)
T pfam08593        45 DILSKEQCSRYLPGYG---------VEFHPNETLFLKLRLLDA   78 (94)
T ss_pred             HHCCHHHHHHHHCCCC---------CCCCCHHHHHHHHHHHHH
T ss_conf             4338999998841368---------644833779999999987


No 4  
>pfam03614 Flag1_repress Repressor of phase-1 flagellin.
Probab=15.37  E-value=79  Score=15.08  Aligned_cols=14  Identities=43%  Similarity=0.560  Sum_probs=11.2

Q ss_pred             HHCCCCEEEEEEEH
Q ss_conf             51466458898504
Q 537021.9.peg.9   10 YAKGANRIRLKVKY   23 (47)
Q Consensus        10 yakganrirlkvky   23 (47)
                      -+||.|||++|...
T Consensus        61 ~~kg~nRievkLE~   74 (165)
T pfam03614        61 PFKGENRIEVKLER   74 (165)
T ss_pred             CCCCCCEEEEEHHH
T ss_conf             87777557875466


No 5  
>pfam04772 Flu_B_M2 Influenza B matrix protein 2 (BM2). M2 is synthesized in the late phase of infection and incorporated into the virion. It may be phosphorylated in vivo. The function of BM2 is unknown.
Probab=12.96  E-value=1.2e+02  Score=14.20  Aligned_cols=14  Identities=57%  Similarity=0.645  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             47989999976330
Q 537021.9.peg.9   23 YSILFLILSALHLK   36 (47)
Q Consensus        23 ysilflilsalhlk   36 (47)
                      .||.-.||||||.-
T Consensus         8 lsicsfilsalhfm   21 (109)
T pfam04772         8 LSICSFILSALHFM   21 (109)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 6  
>pfam08655 DASH_Ask1 DASH complex subunit Ask1. The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis. In Saccharomyces cerevisiae DASH forms both rings and spiral structures on microtubules in vitro. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules.
Probab=11.71  E-value=49  Score=16.03  Aligned_cols=31  Identities=32%  Similarity=0.431  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH
Q ss_conf             0799899851466458898504798999997
Q 537021.9.peg.9    2 EIVSQVERYAKGANRIRLKVKYSILFLILSA   32 (47)
Q Consensus         2 eivsqveryakganrirlkvkysilflilsa   32 (47)
                      .|...|++|+.....++-..++.--|.--||
T Consensus        29 ~IlP~v~~Y~~~s~~v~~s~~fwk~ffe~sa   59 (66)
T pfam08655        29 KILPAVERYAEVSEKVWDSAKFWKQFFEQSA   59 (66)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3145899998861989876799999998643


No 7  
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701   Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 .    These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation  and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination .  For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=11.21  E-value=1e+02  Score=14.56  Aligned_cols=10  Identities=60%  Similarity=0.747  Sum_probs=7.2

Q ss_pred             EEEEEEEHHH
Q ss_conf             5889850479
Q 537021.9.peg.9   16 RIRLKVKYSI   25 (47)
Q Consensus        16 rirlkvkysi   25 (47)
                      -|||||-|+-
T Consensus       375 LiRLkVdY~g  384 (424)
T TIGR00583       375 LIRLKVDYTG  384 (424)
T ss_pred             EEEEEEEECC
T ss_conf             1456887458


No 8  
>pfam06123 CreD Inner membrane protein CreD. This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with an Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA.
Probab=10.64  E-value=1.2e+02  Score=14.30  Aligned_cols=13  Identities=54%  Similarity=0.991  Sum_probs=10.2

Q ss_pred             EEHHHHHHHHHHH
Q ss_conf             5047989999976
Q 537021.9.peg.9   21 VKYSILFLILSAL   33 (47)
Q Consensus        21 vkysilflilsal   33 (47)
                      +||.|||..|+-+
T Consensus       298 ~KYgiLFI~LTF~  310 (430)
T pfam06123       298 IKYGILFIALTFL  310 (430)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8688999999999


No 9  
>pfam04988 AKAP95 A-kinase anchoring protein 95 (AKAP95). A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA.
Probab=10.17  E-value=1.6e+02  Score=13.62  Aligned_cols=17  Identities=24%  Similarity=0.102  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             98999997633010000
Q 537021.9.peg.9   25 ILFLILSALHLKNKVRY   41 (47)
Q Consensus        25 ilflilsalhlknkvry   41 (47)
                      |..-+-|..|.+|+.+|
T Consensus       108 iq~Hl~S~~H~~nrr~~  124 (165)
T pfam04988       108 LQKHLKSPDHNKNRRAM  124 (165)
T ss_pred             HHHHHCCHHHHHHHHHH
T ss_conf             99996576267779999


No 10 
>PRK11715 hypothetical protein; Provisional
Probab=10.12  E-value=1.2e+02  Score=14.17  Aligned_cols=11  Identities=55%  Similarity=1.047  Sum_probs=0.0

Q ss_pred             EEHHHHHHHHH
Q ss_conf             50479899999
Q 537021.9.peg.9   21 VKYSILFLILS   31 (47)
Q Consensus        21 vkysilflils   31 (47)
                      +||.|||..|+
T Consensus       295 ~KYgiLFI~LT  305 (427)
T PRK11715        295 TKYAILFIALT  305 (427)
T ss_pred             HHHHHHHHHHH
T ss_conf             86888999999


Done!