Query         537021.9.peg.911_1
Match_columns 47
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 04:03:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_911.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2kix_A BM2 protein; channel, t  28.1      22 0.00092   16.7   1.7   14   23-36      8-21  (33)
  2 3fho_A ATP-dependent RNA helic  13.4      38  0.0016   15.5   0.3   17    6-22    308-324 (508)
  3 1dj7_A Ferredoxin thioredoxin    5.5 1.8E+02  0.0077   12.3   1.4   39    4-44     15-53  (117)
  4 1kd8_B GABH BLL, GCN4 acid bas   5.4   1E+02  0.0043   13.5  -0.2   10   31-40     16-25  (36)
  5 2bba_A Ephrin type-B receptor    4.1 1.5E+02  0.0064   12.7  -0.0   15   11-25     69-83  (185)
  6 3etp_A Ephrin type-B receptor    3.7 1.8E+02  0.0074   12.4  -0.0   15   11-25     68-82  (187)
  7 2wo1_A Ephrin type-A receptor;   3.6 1.9E+02  0.0078   12.3   0.0   15   11-25     65-79  (185)
  8 3c8x_A Ephrin type-A receptor    3.3   2E+02  0.0085   12.1  -0.0   15   11-25     92-106 (206)
  9 2qbx_A Ephrin type-B receptor    2.5 2.8E+02   0.012   11.5  -0.0   16   10-25     91-106 (208)
 10 2bde_A Cytosolic IMP-GMP speci   2.1 4.2E+02   0.018   10.7   0.9    7    5-11    421-427 (470)

No 1  
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=28.14  E-value=22  Score=16.66  Aligned_cols=14  Identities=57%  Similarity=0.615  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             47989999976330
Q 537021.9.peg.9   23 YSILFLILSALHLK   36 (47)
Q Consensus        23 ysilflilsalhlk   36 (47)
                      .||--.||||||.-
T Consensus         8 lsi~sfilsalhf~   21 (33)
T 2kix_A            8 LSISSFILSALHFI   21 (33)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 2  
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
Probab=13.38  E-value=38  Score=15.54  Aligned_cols=17  Identities=53%  Similarity=0.739  Sum_probs=13.9

Q ss_pred             HHHHHHCCCCEEEEEEE
Q ss_conf             89985146645889850
Q 537021.9.peg.9    6 QVERYAKGANRIRLKVK   22 (47)
Q Consensus         6 qveryakganrirlkvk   22 (47)
                      -.||+|..||.||||..
T Consensus       308 yaerfapnaneirlkte  324 (508)
T 3fho_A          308 YAERFAPNANEIRLKTE  324 (508)
T ss_dssp             HHHHHSTTCEEECCCCC
T ss_pred             HHHHHCCCCCEEEECCH
T ss_conf             99974999650341003


No 3  
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=5.48  E-value=1.8e+02  Score=12.34  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=26.5

Q ss_pred             HHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             99899851466458898504798999997633010000101
Q 537021.9.peg.9    4 VSQVERYAKGANRIRLKVKYSILFLILSALHLKNKVRYGAV   44 (47)
Q Consensus         4 vsqveryakganrirlkvkysilflilsalhlknkvrygav   44 (47)
                      -..+|.||+-.+ ..+-...++...++..| ++||-+||+-
T Consensus        15 ~~f~e~ya~~~G-~~~npD~~v~~~vi~GL-a~nk~~yG~~   53 (117)
T 1dj7_A           15 KNFAEQYAKRTD-TYFCSDLSVTAVVIEGL-ARHKEELGSP   53 (117)
T ss_dssp             HHHHHHHHHHTT-CBCBSSHHHHHHHHHHH-HHHHHHHSSC
T ss_pred             HHHHHHHHHHCC-CEECCCHHHHHHHHHHH-HHHHHHCCCC
T ss_conf             999999998729-65678899999999999-9979980997


No 4  
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=5.36  E-value=1e+02  Score=13.53  Aligned_cols=10  Identities=60%  Similarity=0.707  Sum_probs=6.9

Q ss_pred             HHHHHCCCCC
Q ss_conf             9763301000
Q 537021.9.peg.9   31 SALHLKNKVR   40 (47)
Q Consensus        31 salhlknkvr   40 (47)
                      .-.||||||.
T Consensus        16 klwhlknkva   25 (36)
T 1kd8_B           16 KLWHLKNKVA   25 (36)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 5  
>2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis, peptide mimetics, signaling protein, structural genomics, PSI-2, protein structure initiative; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A
Probab=4.11  E-value=1.5e+02  Score=12.72  Aligned_cols=15  Identities=13%  Similarity=0.518  Sum_probs=11.9

Q ss_pred             HCCCCEEEEEEEHHH
Q ss_conf             146645889850479
Q 537021.9.peg.9   11 AKGANRIRLKVKYSI   25 (47)
Q Consensus        11 akganrirlkvkysi   25 (47)
                      .+||+||-..+++++
T Consensus        69 r~~A~RiyVEl~Ftv   83 (185)
T 2bba_A           69 RRGAVHVYATLRFTM   83 (185)
T ss_dssp             CTTCSSEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
T ss_conf             788249999999998


No 6  
>3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase, alternative splicing, ATP- binding, glycoprotein, kinase, membrane, nucleotide- binding; 2.00A {Mus musculus} PDB: 1nuk_A 1kgy_A 1shw_B*
Probab=3.67  E-value=1.8e+02  Score=12.44  Aligned_cols=15  Identities=40%  Similarity=0.884  Sum_probs=11.7

Q ss_pred             HCCCCEEEEEEEHHH
Q ss_conf             146645889850479
Q 537021.9.peg.9   11 AKGANRIRLKVKYSI   25 (47)
Q Consensus        11 akganrirlkvkysi   25 (47)
                      .+||+||-..+++++
T Consensus        68 r~~A~RiyVEl~Ftv   82 (187)
T 3etp_A           68 RRGAHRIHVEMKFSV   82 (187)
T ss_dssp             CTTCSSEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
T ss_conf             788239999999998


No 7  
>2wo1_A Ephrin type-A receptor; polymorphism, glycoprotein, AXON guidance, tyrosine kinase, nucleotide-binding, EFN, EPHA4, kinase, complex, ephrinb2; 1.85A {Homo sapiens} PDB: 2wo2_A* 2wo3_A* 3ckh_A 3gxu_A
Probab=3.58  E-value=1.9e+02  Score=12.31  Aligned_cols=15  Identities=27%  Similarity=0.800  Sum_probs=11.5

Q ss_pred             HCCCCEEEEEEEHHH
Q ss_conf             146645889850479
Q 537021.9.peg.9   11 AKGANRIRLKVKYSI   25 (47)
Q Consensus        11 akganrirlkvkysi   25 (47)
                      .+||+||-..+++++
T Consensus        65 r~~A~RiyVEl~FTv   79 (185)
T 2wo1_A           65 REGAQRVYIEIKFTL   79 (185)
T ss_dssp             CTTCSCEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
T ss_conf             688359999999987


No 8  
>3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; 1.95A {Homo sapiens} PDB: 3czu_A* 3hei_A 3hpn_A
Probab=3.26  E-value=2e+02  Score=12.15  Aligned_cols=15  Identities=27%  Similarity=0.556  Sum_probs=10.1

Q ss_pred             HCCCCEEEEEEEHHH
Q ss_conf             146645889850479
Q 537021.9.peg.9   11 AKGANRIRLKVKYSI   25 (47)
Q Consensus        11 akganrirlkvkysi   25 (47)
                      .++|.||-..+++++
T Consensus        92 r~~A~RIyVEl~FTv  106 (206)
T 3c8x_A           92 RGEAERIFIELKFTV  106 (206)
T ss_dssp             CTTCSSEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
T ss_conf             688349999999998


No 9  
>2qbx_A Ephrin type-B receptor 2; receptor tyrosine kinase, BI-directional signaling, tumorigenesis, angiogenesis, signaling protein, structural genomics; 2.30A {Homo sapiens}
Probab=2.48  E-value=2.8e+02  Score=11.47  Aligned_cols=16  Identities=38%  Similarity=0.791  Sum_probs=0.0

Q ss_pred             HHCCCCEEEEEEEHHH
Q ss_conf             5146645889850479
Q 537021.9.peg.9   10 YAKGANRIRLKVKYSI   25 (47)
Q Consensus        10 yakganrirlkvkysi   25 (47)
                      +.+||+||-..+++++
T Consensus        91 ~r~~A~RIyVEl~FTv  106 (208)
T 2qbx_A           91 RRRGAHRIHVEMKFSV  106 (208)
T ss_dssp             ECTTCSSEEEEEEEEE
T ss_pred             ECCCCEEEEEEEEEEE
T ss_conf             1798369999999997


No 10 
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Legionella pneumophila} SCOP: c.108.1.23
Probab=2.06  E-value=4.2e+02  Score=10.67  Aligned_cols=7  Identities=57%  Similarity=0.909  Sum_probs=0.0

Q ss_pred             HHHHHHH
Q ss_conf             9899851
Q 537021.9.peg.9    5 SQVERYA   11 (47)
Q Consensus         5 sqverya   11 (47)
                      +|++|||
T Consensus       421 ~ql~RyA  427 (470)
T 2bde_A          421 YQVDRFA  427 (470)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
T ss_conf             9999982


Done!