Query 537021.9.peg.911_1 Match_columns 47 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 04:03:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_911.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2kix_A BM2 protein; channel, t 28.1 22 0.00092 16.7 1.7 14 23-36 8-21 (33) 2 3fho_A ATP-dependent RNA helic 13.4 38 0.0016 15.5 0.3 17 6-22 308-324 (508) 3 1dj7_A Ferredoxin thioredoxin 5.5 1.8E+02 0.0077 12.3 1.4 39 4-44 15-53 (117) 4 1kd8_B GABH BLL, GCN4 acid bas 5.4 1E+02 0.0043 13.5 -0.2 10 31-40 16-25 (36) 5 2bba_A Ephrin type-B receptor 4.1 1.5E+02 0.0064 12.7 -0.0 15 11-25 69-83 (185) 6 3etp_A Ephrin type-B receptor 3.7 1.8E+02 0.0074 12.4 -0.0 15 11-25 68-82 (187) 7 2wo1_A Ephrin type-A receptor; 3.6 1.9E+02 0.0078 12.3 0.0 15 11-25 65-79 (185) 8 3c8x_A Ephrin type-A receptor 3.3 2E+02 0.0085 12.1 -0.0 15 11-25 92-106 (206) 9 2qbx_A Ephrin type-B receptor 2.5 2.8E+02 0.012 11.5 -0.0 16 10-25 91-106 (208) 10 2bde_A Cytosolic IMP-GMP speci 2.1 4.2E+02 0.018 10.7 0.9 7 5-11 421-427 (470) No 1 >2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus} Probab=28.14 E-value=22 Score=16.66 Aligned_cols=14 Identities=57% Similarity=0.615 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 47989999976330 Q 537021.9.peg.9 23 YSILFLILSALHLK 36 (47) Q Consensus 23 ysilflilsalhlk 36 (47) .||--.||||||.- T Consensus 8 lsi~sfilsalhf~ 21 (33) T 2kix_A 8 LSISSFILSALHFI 21 (33) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 2 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} Probab=13.38 E-value=38 Score=15.54 Aligned_cols=17 Identities=53% Similarity=0.739 Sum_probs=13.9 Q ss_pred HHHHHHCCCCEEEEEEE Q ss_conf 89985146645889850 Q 537021.9.peg.9 6 QVERYAKGANRIRLKVK 22 (47) Q Consensus 6 qveryakganrirlkvk 22 (47) -.||+|..||.||||.. T Consensus 308 yaerfapnaneirlkte 324 (508) T 3fho_A 308 YAERFAPNANEIRLKTE 324 (508) T ss_dssp HHHHHSTTCEEECCCCC T ss_pred HHHHHCCCCCEEEECCH T ss_conf 99974999650341003 No 3 >1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A Probab=5.48 E-value=1.8e+02 Score=12.34 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=26.5 Q ss_pred HHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCE Q ss_conf 99899851466458898504798999997633010000101 Q 537021.9.peg.9 4 VSQVERYAKGANRIRLKVKYSILFLILSALHLKNKVRYGAV 44 (47) Q Consensus 4 vsqveryakganrirlkvkysilflilsalhlknkvrygav 44 (47) -..+|.||+-.+ ..+-...++...++..| ++||-+||+- T Consensus 15 ~~f~e~ya~~~G-~~~npD~~v~~~vi~GL-a~nk~~yG~~ 53 (117) T 1dj7_A 15 KNFAEQYAKRTD-TYFCSDLSVTAVVIEGL-ARHKEELGSP 53 (117) T ss_dssp HHHHHHHHHHTT-CBCBSSHHHHHHHHHHH-HHHHHHHSSC T ss_pred HHHHHHHHHHCC-CEECCCHHHHHHHHHHH-HHHHHHCCCC T ss_conf 999999998729-65678899999999999-9979980997 No 4 >1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Probab=5.36 E-value=1e+02 Score=13.53 Aligned_cols=10 Identities=60% Similarity=0.707 Sum_probs=6.9 Q ss_pred HHHHHCCCCC Q ss_conf 9763301000 Q 537021.9.peg.9 31 SALHLKNKVR 40 (47) Q Consensus 31 salhlknkvr 40 (47) .-.||||||. T Consensus 16 klwhlknkva 25 (36) T 1kd8_B 16 KLWHLKNKVA 25 (36) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 5 >2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis, peptide mimetics, signaling protein, structural genomics, PSI-2, protein structure initiative; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A Probab=4.11 E-value=1.5e+02 Score=12.72 Aligned_cols=15 Identities=13% Similarity=0.518 Sum_probs=11.9 Q ss_pred HCCCCEEEEEEEHHH Q ss_conf 146645889850479 Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47) Q Consensus 11 akganrirlkvkysi 25 (47) .+||+||-..+++++ T Consensus 69 r~~A~RiyVEl~Ftv 83 (185) T 2bba_A 69 RRGAVHVYATLRFTM 83 (185) T ss_dssp CTTCSSEEEEEEEEE T ss_pred CCCCEEEEEEEEEEE T ss_conf 788249999999998 No 6 >3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase, alternative splicing, ATP- binding, glycoprotein, kinase, membrane, nucleotide- binding; 2.00A {Mus musculus} PDB: 1nuk_A 1kgy_A 1shw_B* Probab=3.67 E-value=1.8e+02 Score=12.44 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=11.7 Q ss_pred HCCCCEEEEEEEHHH Q ss_conf 146645889850479 Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47) Q Consensus 11 akganrirlkvkysi 25 (47) .+||+||-..+++++ T Consensus 68 r~~A~RiyVEl~Ftv 82 (187) T 3etp_A 68 RRGAHRIHVEMKFSV 82 (187) T ss_dssp CTTCSSEEEEEEEEE T ss_pred CCCCEEEEEEEEEEE T ss_conf 788239999999998 No 7 >2wo1_A Ephrin type-A receptor; polymorphism, glycoprotein, AXON guidance, tyrosine kinase, nucleotide-binding, EFN, EPHA4, kinase, complex, ephrinb2; 1.85A {Homo sapiens} PDB: 2wo2_A* 2wo3_A* 3ckh_A 3gxu_A Probab=3.58 E-value=1.9e+02 Score=12.31 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=11.5 Q ss_pred HCCCCEEEEEEEHHH Q ss_conf 146645889850479 Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47) Q Consensus 11 akganrirlkvkysi 25 (47) .+||+||-..+++++ T Consensus 65 r~~A~RiyVEl~FTv 79 (185) T 2wo1_A 65 REGAQRVYIEIKFTL 79 (185) T ss_dssp CTTCSCEEEEEEEEE T ss_pred CCCCEEEEEEEEEEE T ss_conf 688359999999987 No 8 >3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; 1.95A {Homo sapiens} PDB: 3czu_A* 3hei_A 3hpn_A Probab=3.26 E-value=2e+02 Score=12.15 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=10.1 Q ss_pred HCCCCEEEEEEEHHH Q ss_conf 146645889850479 Q 537021.9.peg.9 11 AKGANRIRLKVKYSI 25 (47) Q Consensus 11 akganrirlkvkysi 25 (47) .++|.||-..+++++ T Consensus 92 r~~A~RIyVEl~FTv 106 (206) T 3c8x_A 92 RGEAERIFIELKFTV 106 (206) T ss_dssp CTTCSSEEEEEEEEE T ss_pred CCCCEEEEEEEEEEE T ss_conf 688349999999998 No 9 >2qbx_A Ephrin type-B receptor 2; receptor tyrosine kinase, BI-directional signaling, tumorigenesis, angiogenesis, signaling protein, structural genomics; 2.30A {Homo sapiens} Probab=2.48 E-value=2.8e+02 Score=11.47 Aligned_cols=16 Identities=38% Similarity=0.791 Sum_probs=0.0 Q ss_pred HHCCCCEEEEEEEHHH Q ss_conf 5146645889850479 Q 537021.9.peg.9 10 YAKGANRIRLKVKYSI 25 (47) Q Consensus 10 yakganrirlkvkysi 25 (47) +.+||+||-..+++++ T Consensus 91 ~r~~A~RIyVEl~FTv 106 (208) T 2qbx_A 91 RRRGAHRIHVEMKFSV 106 (208) T ss_dssp ECTTCSSEEEEEEEEE T ss_pred ECCCCEEEEEEEEEEE T ss_conf 1798369999999997 No 10 >2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Legionella pneumophila} SCOP: c.108.1.23 Probab=2.06 E-value=4.2e+02 Score=10.67 Aligned_cols=7 Identities=57% Similarity=0.909 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 9899851 Q 537021.9.peg.9 5 SQVERYA 11 (47) Q Consensus 5 sqverya 11 (47) +|++||| T Consensus 421 ~ql~RyA 427 (470) T 2bde_A 421 YQVDRFA 427 (470) T ss_dssp HHHHHHC T ss_pred HHHHHHH T ss_conf 9999982 Done!