RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.912_1 (47 letters) >gnl|CDD|38013 KOG2802, KOG2802, KOG2802, Membrane protein HUEL (cation efflux superfamily) [General function prediction only]. Length = 503 Score = 24.2 bits (52), Expect = 8.0 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 2/43 (4%) Query: 7 RTRLPHHKDPNTALY--REKSHWTGLVSATRRNLDLHFNKIVQ 47 R R PH + +Y + V + L +V+ Sbjct: 136 RRRSPHEDTSSHTVYLRSDVEAKALEVWGSPEALARERRPLVE 178 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.132 0.412 Gapped Lambda K H 0.267 0.0707 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 562,634 Number of extensions: 16682 Number of successful extensions: 46 Number of sequences better than 10.0: 1 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 4 Length of query: 47 Length of database: 6,263,737 Length adjustment: 20 Effective length of query: 27 Effective length of database: 5,831,557 Effective search space: 157452039 Effective search space used: 157452039 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.5 bits)