RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.912_1
         (47 letters)



>gnl|CDD|38013 KOG2802, KOG2802, KOG2802, Membrane protein HUEL (cation efflux
           superfamily) [General function prediction only].
          Length = 503

 Score = 24.2 bits (52), Expect = 8.0
 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 7   RTRLPHHKDPNTALY--REKSHWTGLVSATRRNLDLHFNKIVQ 47
           R R PH    +  +Y   +       V  +   L      +V+
Sbjct: 136 RRRSPHEDTSSHTVYLRSDVEAKALEVWGSPEALARERRPLVE 178


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 562,634
Number of extensions: 16682
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 4
Length of query: 47
Length of database: 6,263,737
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,831,557
Effective search space: 157452039
Effective search space used: 157452039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)