Query 537021.9.peg.913_1
Match_columns 102
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 03:21:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_913.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1foe_A T-lymphoma invasion an 12.8 1E+02 0.0031 13.2 2.9 35 57-96 106-151 (166)
2 >3k8p_C DSL1, KLLA0C02695P; in 12.3 41 0.0012 15.4 -0.6 30 62-102 4-33 (52)
3 >1pov_0 Poliovirus native empt 11.6 19 0.00056 17.2 -2.5 23 74-96 207-229 (291)
4 >1bds_A BDS-I; anti-hypertensi 9.9 1.2E+02 0.0037 12.8 1.2 18 67-84 10-27 (43)
5 >1aym_2 HRV16, human rhinoviru 9.9 22 0.00064 16.9 -2.6 25 71-95 177-201 (261)
6 >3cji_C Polyprotein; virus cap 9.5 25 0.00074 16.6 -2.5 20 77-96 200-219 (284)
7 >1hxs_2 Genome polyprotein, co 8.0 32 0.00093 16.0 -2.5 27 70-96 184-210 (272)
8 >1d4m_2 Protein (coxsackieviru 7.8 30 0.0009 16.1 -2.6 20 77-96 183-202 (261)
9 >1m56_D Cytochrome C oxidase; 6.8 1.8E+02 0.0053 11.9 1.6 18 7-24 34-51 (51)
10 >1tme_2 Theiler'S murine encep 6.5 41 0.0012 15.4 -2.5 17 79-95 189-205 (267)
No 1
>>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} (A:212-377)
Probab=12.78 E-value=1e+02 Score=13.23 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=23.7
Q ss_pred EECCCCCCEEE----------CCCE-EEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 41376531011----------5531-4653135860214356542887764
Q 537021.9.peg.9 57 FSADSDSKAMW----------GRGE-LFKLSSSMPHGFIALLTNNIVKIVK 96 (102)
Q Consensus 57 fsadsdskamw----------grge-lfklsssmphgfialltnnivkivk 96 (102)
-.+|+|+.++| ||-| .|.|++|-|. ..|+++|.++
T Consensus 106 ~~~~te~~~vwEliH~kS~~egRpE~vf~lc~st~E-----~K~~flK~Ir 151 (166)
T 1foe_A 106 PSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPE-----SRKDFLKSVH 151 (166)
T ss_dssp CCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHH-----HHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCHH-----HHHHHHHHHH
T ss_conf 786533355321353100136888628999889999-----9999999999
No 2
>>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} (C:306-357)
Probab=12.33 E-value=41 Score=15.41 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=18.9
Q ss_pred CCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 53101155314653135860214356542887764222159
Q 537021.9.peg.9 62 DSKAMWGRGELFKLSSSMPHGFIALLTNNIVKIVKYFFIPS 102 (102)
Q Consensus 62 dskamwgrgelfklsssmphgfialltnnivkivkyffips 102 (102)
|-+.||-.|||+-.+. ..+|..++-.|.+|
T Consensus 4 DI~~l~~eGel~lfs~-----------eEvv~lI~~lF~ds 33 (52)
T 3k8p_C 4 DILEXFYEGEFFLFET-----------DEIVQWIILLFADT 33 (52)
T ss_dssp HHHHHHHTTGGGGSCH-----------HHHHHHHHHHSCCC
T ss_pred HHHHHHHCCCCCCCCH-----------HHHHHHHHHHCCCC
T ss_conf 9999995797545788-----------99999999984587
No 3
>>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral virus; HET: MYR SPH; 2.80A {Human poliovirus 1 mahoney} (0:50-340)
Probab=11.60 E-value=19 Score=17.24 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=18.0
Q ss_pred EECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 53135860214356542887764
Q 537021.9.peg.9 74 KLSSSMPHGFIALLTNNIVKIVK 96 (102)
Q Consensus 74 klsssmphgfialltnnivkivk 96 (102)
.--.-.||.+|-|-|||.+.|+-
T Consensus 207 ~~~~~fPHq~iNlrtnn~atl~v 229 (291)
T 1pov_0 207 GNAFVFPHQIINLRTNNCATLVL 229 (291)
T ss_dssp GGGGGSSEEEEETTTCSEEEEEE
T ss_pred HHHHHCCHHHCCCCCCCEEEEEE
T ss_conf 47554745111467787357994
No 4
>>1bds_A BDS-I; anti-hypertensive, anti-viral protein; NMR {Anemonia sulcata} (A:)
Probab=9.92 E-value=1.2e+02 Score=12.80 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=15.2
Q ss_pred ECCCEEEEECCCCCHHHH
Q ss_conf 155314653135860214
Q 537021.9.peg.9 67 WGRGELFKLSSSMPHGFI 84 (102)
Q Consensus 67 wgrgelfklsssmphgfi 84 (102)
=|||+|.-|...-|.|+-
T Consensus 10 pgrgdlwilrgtcpggyg 27 (43)
T 1bds_A 10 PGRGDLWILRGTCPGGYG 27 (43)
T ss_dssp CSCCEEECSCSSCCTTTC
T ss_pred CCCCCEEEEECCCCCCCC
T ss_conf 887747899532688753
No 5
>>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B* 1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2* 2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* (2:)
Probab=9.89 E-value=22 Score=16.92 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 1465313586021435654288776
Q 537021.9.peg.9 71 ELFKLSSSMPHGFIALLTNNIVKIV 95 (102)
Q Consensus 71 elfklsssmphgfialltnnivkiv 95 (102)
..+.-..-+||.+|-|-|||.+.|+
T Consensus 177 ~~~~~lt~fPHq~INlrTNn~Atl~ 201 (261)
T 1aym_2 177 TLLGNLLIFPHQFINLRSNNSATLI 201 (261)
T ss_dssp BCGGGGGGSSEEEEETTTCSEEEEE
T ss_pred EEECCEEEEEEEECCCCCCCEEEEE
T ss_conf 7651345751121157778647899
No 6
>>3cji_C Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus} (C:)
Probab=9.47 E-value=25 Score=16.58 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 35860214356542887764
Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIVK 96 (102)
Q Consensus 77 ssmphgfialltnnivkivk 96 (102)
--+||.+|-|-|||.+.|+-
T Consensus 200 ~v~PHq~iNlrtnn~atl~v 219 (284)
T 3cji_C 200 TVFPHQILNARTSTSVDINV 219 (284)
T ss_dssp GGSSEEEEETTTCSEEEEEE
T ss_pred CCCCHHEEECCCCCEEEEEE
T ss_conf 13374322367577378997
No 7
>>1hxs_2 Genome polyprotein, coat protein VP2; picornavirus, AB initio phase determinaion, icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1 mahoney} PDB: 1ar6_2* 1ar8_2* 1asj_2* 1al2_2* 1nn8_2 1po1_2* 1po2_2* 1vbd_2* 2plv_2* 1ar7_2* 1ar9_2* 3epc_2* 1dgi_2* 1eah_2* 1xyr_2 3epf_2* 1pvc_2* 1piv_2* 1vba_2* 1vbb_2* ... (2:)
Probab=7.98 E-value=32 Score=16.04 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=18.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 314653135860214356542887764
Q 537021.9.peg.9 70 GELFKLSSSMPHGFIALLTNNIVKIVK 96 (102)
Q Consensus 70 gelfklsssmphgfialltnnivkivk 96 (102)
|-.+.--.-.||.+|-|-|||.+.|+-
T Consensus 184 g~~~~~~~~fPHq~iNlrtnn~atl~v 210 (272)
T 1hxs_2 184 GTLLGNAFVFPHQIINLRTNNCATLVL 210 (272)
T ss_dssp TBCGGGGGGSSEEEEETTTCSEEEEEE
T ss_pred CEEECCEEECCHHEEECCCCCCEEEEE
T ss_conf 605333143303405512477137874
No 8
>>1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} PDB: 1mqt_B* 1oop_B* 1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B (2:)
Probab=7.82 E-value=30 Score=16.12 Aligned_cols=20 Identities=45% Similarity=0.595 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 35860214356542887764
Q 537021.9.peg.9 77 SSMPHGFIALLTNNIVKIVK 96 (102)
Q Consensus 77 ssmphgfialltnnivkivk 96 (102)
...||.+|-|-|||.+.|+-
T Consensus 183 ~~fPHq~INlrtnn~ati~v 202 (261)
T 1d4m_2 183 TIYPHQWINLRTNNSATIVM 202 (261)
T ss_dssp GGSSEEEEETTTCSEEEEEE
T ss_pred CCCCHHEEECCCCCEEEEEE
T ss_conf 53654231067677378997
No 9
>>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:)
Probab=6.79 E-value=1.8e+02 Score=11.90 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=8.9
Q ss_pred ECCCHHHHHHHHHHHHCC
Q ss_conf 500099999999998538
Q 537021.9.peg.9 7 WENVFFITIFSFLALFGS 24 (102)
Q Consensus 7 wenvffitifsflalfgs 24 (102)
|--+.-|-+.-|||+|++
T Consensus 34 ~~~i~ii~~liFlAif~~ 51 (51)
T 1m56_D 34 WAAVVIVAALIFLALANA 51 (51)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999629
No 10
>>1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2 (2:)
Probab=6.54 E-value=41 Score=15.42 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 86021435654288776
Q 537021.9.peg.9 79 MPHGFIALLTNNIVKIV 95 (102)
Q Consensus 79 mphgfialltnnivkiv 95 (102)
+||.+|-|-|||.+.|+
T Consensus 189 fPHq~INlrtnn~atl~ 205 (267)
T 1tme_2 189 YPHQILNLRTNTTVDLE 205 (267)
T ss_dssp SSEEEEETTTCSEEEEE
T ss_pred CCHHEEECCCCCEEEEE
T ss_conf 57305327768858899
Done!