RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.913_1
         (102 letters)



>gnl|CDD|109783 pfam00739, X, Trans-activation protein X.  This protein is found
          in hepadnaviruses where it is indispensable for
          replication.
          Length = 142

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 17 SFLALFGSSVSFFSCSENCFLGFSC 41
          + L+L G  V  FS +  C L F+ 
Sbjct: 51 ADLSLRGLPVCAFSSAGPCALRFTS 75


>gnl|CDD|36596 KOG1382, KOG1382, KOG1382, Multiple inositol polyphosphate
           phosphatase [General function prediction only].
          Length = 467

 Score = 24.1 bits (52), Expect = 9.2
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 25  SVSFFSCS-ENCFLGFSCDSITFFSCSESSFFSFSADSDSKAMWGRGELFKLSSSMPHGF 83
           S  FF C+ E    G+  D    F+  E     F    D +  +G G  ++L+SS+    
Sbjct: 258 SSLFFWCAYEIALKGYRSDWCDIFTPDE--LLVFEYLEDLEYYYGDGYGYELNSSLGCPL 315

Query: 84  IALLTNNIVKIVK 96
              L  ++ +  +
Sbjct: 316 FNDLLKSLRESEE 328


>gnl|CDD|29618 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase
           (NAPRTase), subgroup B. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products..
          Length = 302

 Score = 24.0 bits (52), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 74  KLSSSMPHGFIALLTNNIVKIVKYF 98
           K S +MPH  I +   + V+  K F
Sbjct: 153 KPSGTMPHALIQIFGGDQVEAWKAF 177


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.333    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,303,088
Number of extensions: 61414
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 74
Length of query: 102
Length of database: 6,263,737
Length adjustment: 69
Effective length of query: 33
Effective length of database: 4,772,716
Effective search space: 157499628
Effective search space used: 157499628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.5 bits)