RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.913_1
         (102 letters)



>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's
           murine encephalomyelitis virus, strain da [TaxId:
           12124]}
          Length = 280

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 80  PHGFIALLTNNIVKIV 95
           PH  + L TN  V + 
Sbjct: 204 PHQILNLRTNTTVDLE 219


>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
           rhinovirus 16, (HRV-16) [TaxId: 31708]}
          Length = 296

 Score = 24.8 bits (54), Expect = 2.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 80  PHGFIALLTNNIVKIV 95
           PH FI L +NN   ++
Sbjct: 221 PHQFINLRSNNSATLI 236


>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
           rhinovirus B 14 (HRV-14) [TaxId: 12131]}
          Length = 295

 Score = 24.4 bits (53), Expect = 2.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 80  PHGFIALLTNNIVKIV 95
           PH FI L TNN   IV
Sbjct: 218 PHQFINLRTNNTATIV 233


>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
           {Pseudaminobacter salicylatoxidans [TaxId: 93369]}
          Length = 351

 Score = 24.3 bits (52), Expect = 3.1
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 57  FSADSDSKAMWGRGELFKLSSSMPHGFIAL 86
           ++  +       RG+L        HG +  
Sbjct: 120 WTVVNGDPVRMSRGDLLLTPGWCFHGHMND 149


>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
           3, strain Sabin [TaxId: 12086]}
          Length = 334

 Score = 24.0 bits (52), Expect = 3.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 80  PHGFIALLTNNIVKIV 95
           PH  I L TNN   IV
Sbjct: 256 PHQIINLRTNNSATIV 271


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
           coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 23.2 bits (50), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 80  PHGFIALLTNNIVKIV 95
           PH +I L TNN   IV
Sbjct: 245 PHQWINLRTNNSATIV 260


>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 161

 Score = 23.1 bits (50), Expect = 7.4
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 71  ELFKLSSSMPHGFIALLTNNIVKIVKYFFI 100
           E+  LS    +G I L     +   K   I
Sbjct: 95  EIIPLSIVNVYGSIGLTNFGYLDKEKIGII 124


>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 159

 Score = 22.7 bits (49), Expect = 7.6
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 71  ELFKLSSSMPHGFIALLTNNIVKIVKYFFI 100
           E+  LS    +G I       +  VK   +
Sbjct: 94  EILALSIVNVYGSIGFTNYGYIDKVKPGIL 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,088
Number of extensions: 14108
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 17
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.1 bits)