RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.916_1 (46 letters) >gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated. Length = 555 Score = 25.8 bits (57), Expect = 2.9 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%) Query: 15 SFSDNVFNSLVILSNSLS 32 F D+V SL+I+S LS Sbjct: 10 CFQDSV--SLMIISRKLS 25 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.327 0.131 0.377 Gapped Lambda K H 0.267 0.0776 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 637,690 Number of extensions: 21247 Number of successful extensions: 54 Number of sequences better than 10.0: 1 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 5 Length of query: 46 Length of database: 5,994,473 Length adjustment: 19 Effective length of query: 27 Effective length of database: 5,583,921 Effective search space: 150765867 Effective search space used: 150765867 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (22.9 bits)