RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.916_1
         (46 letters)



>gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated.
          Length = 555

 Score = 25.8 bits (57), Expect = 2.9
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%)

Query: 15 SFSDNVFNSLVILSNSLS 32
           F D+V  SL+I+S  LS
Sbjct: 10 CFQDSV--SLMIISRKLS 25


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0776    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 637,690
Number of extensions: 21247
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 5
Length of query: 46
Length of database: 5,994,473
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,583,921
Effective search space: 150765867
Effective search space used: 150765867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (22.9 bits)