RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.916_1
         (46 letters)



>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET:
          NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A*
          3ciy_A* (A:)
          Length = 680

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 3/32 (9%)

Query: 4  TFFSCSKNAFFSFSDNVFNSLVIL---SNSLS 32
              CS        D++  ++ +L    N L 
Sbjct: 7  EVADCSHLKLTQVPDDLPTNITVLNLTHNQLR 38


>2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B;
          TLR2, TLR1, lipopeptide, innate immunity, glycoprotein,
          immune response, inflammatory response, leucine-rich
          repeat, membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo
          sapiens} (B:1-484)
          Length = 484

 Score = 25.7 bits (54), Expect = 2.2
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 3/32 (9%)

Query: 4  TFFSCSKNAFFSFSDNVFNSLVIL---SNSLS 32
               SKN       ++     IL    N +S
Sbjct: 3  FLVDRSKNGLIHVPKDLSQKTTILNISQNYIS 34


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 279,188
Number of extensions: 6202
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 5
Length of query: 46
Length of database: 4,956,049
Length adjustment: 18
Effective length of query: 28
Effective length of database: 4,347,559
Effective search space: 121731652
Effective search space used: 121731652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.6 bits)