RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.916_1 (46 letters) >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* (A:) Length = 680 Score = 26.2 bits (55), Expect = 1.5 Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 3/32 (9%) Query: 4 TFFSCSKNAFFSFSDNVFNSLVIL---SNSLS 32 CS D++ ++ +L N L Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLR 38 >2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2, TLR1, lipopeptide, innate immunity, glycoprotein, immune response, inflammatory response, leucine-rich repeat, membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} (B:1-484) Length = 484 Score = 25.7 bits (54), Expect = 2.2 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 3/32 (9%) Query: 4 TFFSCSKNAFFSFSDNVFNSLVIL---SNSLS 32 SKN ++ IL N +S Sbjct: 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYIS 34 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.131 0.377 Gapped Lambda K H 0.267 0.0479 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 279,188 Number of extensions: 6202 Number of successful extensions: 23 Number of sequences better than 10.0: 1 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 5 Length of query: 46 Length of database: 4,956,049 Length adjustment: 18 Effective length of query: 28 Effective length of database: 4,347,559 Effective search space: 121731652 Effective search space used: 121731652 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.6 bits)