Query 537021.9.peg.930_1 Match_columns 51 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 03:33:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_930.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3fy6_A Integron cassette prote 20.4 35 0.0015 15.5 1.6 12 31-42 77-88 (126) 2 2hq4_A Hypothetical protein PH 5.4 44 0.0018 15.0 -2.1 12 6-17 132-143 (161) 3 2kne_B CAM, ATPase, Ca++ trans 4.1 2.1E+02 0.009 11.4 2.1 14 36-49 5-18 (28) 4 2ikb_A Hypothetical protein NM 3.3 2.5E+02 0.011 11.0 1.3 22 28-49 139-160 (167) 5 2p0v_A Hypothetical protein BT 3.2 2.6E+02 0.011 10.9 2.0 40 5-48 174-215 (489) 6 1g92_A Poneratoxin, PAC-TX; ne 2.9 2.8E+02 0.012 10.8 0.4 10 20-29 1-10 (26) 7 1x10_A Pyrrolidone-carboxylate 2.6 3E+02 0.013 10.6 1.1 11 12-22 136-146 (208) 8 3hw5_A Polymerase acidic prote 2.5 3.1E+02 0.013 10.5 3.0 30 6-35 164-193 (261) 9 2kng_A Protein LSR2; DNA-bindi 2.5 2.8E+02 0.012 10.8 -0.1 11 6-16 25-35 (55) 10 3p2c_A Putative glycosyl hydro 2.4 3.3E+02 0.014 10.4 1.9 37 7-47 159-197 (463) No 1 >3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae} Probab=20.37 E-value=35 Score=15.51 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHH Q ss_conf 779999999999 Q 537021.9.peg.9 31 SFSLFQHLWLKR 42 (51) Q Consensus 31 sfslfqhlwlkr 42 (51) .-.||||.||.- T Consensus 77 tqnlfqhawlew 88 (126) T 3fy6_A 77 TQNLFQHAWLEW 88 (126) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 899999999999 No 2 >2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1 Probab=5.39 E-value=44 Score=15.01 Aligned_cols=12 Identities=58% Similarity=1.052 Sum_probs=6.4 Q ss_pred CCCCHHHHHHHH Q ss_conf 366842303399 Q 537021.9.peg.9 6 NNYNLDERGRFF 17 (51) Q Consensus 6 nnynldergrff 17 (51) +|+-||+|||.| T Consensus 132 knFllD~rg~Lf 143 (161) T 2hq4_A 132 NYFILDPRGRLF 143 (161) T ss_dssp SSEEECTTSEEE T ss_pred CEEEECCCCEEE T ss_conf 325787985499 No 3 >2kne_B CAM, ATPase, Ca++ transporting, plasma membrane 4; protein/peptide, calcium pump, calmodulin, acetylation, calcium, isopeptide bond, methylation; NMR {Homo sapiens} Probab=4.08 E-value=2.1e+02 Score=11.38 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999988740 Q 537021.9.peg.9 36 QHLWLKRLSSILVQ 49 (51) Q Consensus 36 qhlwlkrlssilvq 49 (51) |-||..-|..|-.| T Consensus 5 qiLW~rGL~RiQtQ 18 (28) T 2kne_B 5 QILWFRGLNRIQTQ 18 (28) T ss_dssp HHHHHHHHHHHHHH T ss_pred CEEEEECHHHHHHH T ss_conf 38887046788999 No 4 >2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Neisseria meningitidis MC58} SCOP: d.2.1.9 PDB: 2is5_A* Probab=3.34 E-value=2.5e+02 Score=11.01 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5667799999999999988740 Q 537021.9.peg.9 28 TLRSFSLFQHLWLKRLSSILVQ 49 (51) Q Consensus 28 tlrsfslfqhlwlkrlssilvq 49 (51) .|.++.-|..=|++|+.+-+.+ T Consensus 139 ~l~~~~~F~~GW~~Rva~~~~~ 160 (167) T 2ikb_A 139 KLGTFTSFGKGWVRRVAQNLIH 160 (167) T ss_dssp HHCCSSHHHHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHH T ss_conf 6473035778899998999985 No 5 >2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8 Probab=3.15 E-value=2.6e+02 Score=10.90 Aligned_cols=40 Identities=25% Similarity=0.555 Sum_probs=27.1 Q ss_pred ECCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13668423033999999999--998566779999999999998874 Q 537021.9.peg.9 5 FNNYNLDERGRFFCYFLSLL--IVDTLRSFSLFQHLWLKRLSSILV 48 (51) Q Consensus 5 fnnynldergrffcyflsll--ivdtlrsfslfqhlwlkrlssilv 48 (51) =-+|.+|. .|||+.|. ....-.+-+.|+.-|.+-+..||- T Consensus 174 ErKyElDS----L~y~l~La~~Y~~~Tgd~~~f~~~w~~Av~~IL~ 215 (489) T 2p0v_A 174 ERKWEIDS----LCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLK 215 (489) T ss_dssp ECCCCHHH----HHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHH T ss_pred EECCHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 41105876----3899999999998639866413899999999999 No 6 >1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2 Probab=2.92 E-value=2.8e+02 Score=10.77 Aligned_cols=10 Identities=60% Similarity=1.026 Sum_probs=5.2 Q ss_pred HHHHHHHHHH Q ss_conf 9999999856 Q 537021.9.peg.9 20 FLSLLIVDTL 29 (51) Q Consensus 20 flsllivdtl 29 (51) ||.|||...| T Consensus 1 flpllilgsl 10 (26) T 1g92_A 1 FLPLLILGSL 10 (26) T ss_dssp CHHHHHHHTC T ss_pred CCHHHHHHHH T ss_conf 9238998877 No 7 >1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Probab=2.65 E-value=3e+02 Score=10.58 Aligned_cols=11 Identities=9% Similarity=0.465 Sum_probs=7.2 Q ss_pred HHHHHHHHHHH Q ss_conf 30339999999 Q 537021.9.peg.9 12 ERGRFFCYFLS 22 (51) Q Consensus 12 ergrffcyfls 22 (51) .-|||.|-++. T Consensus 136 daG~YlCN~~~ 146 (208) T 1x10_A 136 SAGLYLSNYVM 146 (208) T ss_dssp CCCSSHHHHHH T ss_pred CCCCCCHHHHH T ss_conf 87532016999 No 8 >3hw5_A Polymerase acidic protein; avian influenza virus, PA_N, AMP, phosphoprotein, hydrolase; HET: AMP; 1.81A {Influenza a virus} PDB: 3hw4_A* 3hw3_A* 3hw6_A 3ebj_A 2w69_A Probab=2.55 E-value=3.1e+02 Score=10.51 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=13.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 366842303399999999999856677999 Q 537021.9.peg.9 6 NNYNLDERGRFFCYFLSLLIVDTLRSFSLF 35 (51) Q Consensus 6 nnynldergrffcyflsllivdtlrsfslf 35 (51) +.|+|||.+|---.---.-|-+-+++-.|| T Consensus 164 ~d~~ldEE~k~Ri~srL~t~~~el~~~~lw 193 (261) T 3hw5_A 164 ADYTLDEESRARIKTRLFTIRQEMASRGLW 193 (261) T ss_dssp GCCCSCHHHHHHHHHHHHHHHHHHHHTTCH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 134524576787999999999999861016 No 9 >2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis} Probab=2.51 E-value=2.8e+02 Score=10.79 Aligned_cols=11 Identities=45% Similarity=0.758 Sum_probs=8.3 Q ss_pred CCCCHHHHHHH Q ss_conf 36684230339 Q 537021.9.peg.9 6 NNYNLDERGRF 16 (51) Q Consensus 6 nnynldergrf 16 (51) |.|...+|||. T Consensus 25 ~G~~Vs~RGRI 35 (55) T 2kng_A 25 NGHNVSTRGRI 35 (55) T ss_dssp TTCCCCSSSCC T ss_pred CCCCCCCCCCC T ss_conf 38837878988 No 10 >3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PGE; 1.60A {Bacteroides ovatus} PDB: 3on6_A* Probab=2.36 E-value=3.3e+02 Score=10.38 Aligned_cols=37 Identities=27% Similarity=0.664 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6684230339999999999--9856677999999999999887 Q 537021.9.peg.9 7 NYNLDERGRFFCYFLSLLI--VDTLRSFSLFQHLWLKRLSSIL 47 (51) Q Consensus 7 nynldergrffcyflslli--vdtlrsfslfqhlwlkrlssil 47 (51) +|.||. .|||+.|+- ...-.+.+.|...|.+.+..|+ T Consensus 159 KyElDS----L~~~l~La~~Yy~~Tgd~~~f~~~~~~av~~Il 197 (463) T 3p2c_A 159 KWEIDS----LCYPLRLAYHYWKTTGDASIFNEEWIQAITNVL 197 (463) T ss_dssp CCCHHH----HHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHH T ss_pred CEEHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 602224----479999999999972986642399999999999 Done!