RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.930_1
         (51 letters)



>gnl|CDD|131691 TIGR02643, T_phosphoryl, thymidine phosphorylase.  Thymidine
          phosphorylase (alternate name: pyrimidine
          phosphorylase), EC 2.4.2.4, is the designation for the
          enzyme of E. coli and other Proteobacteria involved in
          (deoxy)nucleotide degradation. It often occurs in an
          operon with a deoxyribose-phosphate aldolase,
          phosphopentomutase and a purine nucleoside
          phosphorylase. In many other lineages, the
          corresponding enzyme is designated
          pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the
          naming convention imposed by this model represents
          standard literature practice.
          Length = 437

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 1  MAFFFNNYNLDER 13
          MA FFN  N DER
Sbjct: 43 MAVFFNGMNRDER 55


>gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA.  This
           bacterial (and Arabidopsis) protein, termed TypA or
           BipA, a GTP-binding protein, is phosphorylated on a
           tyrosine residue under some cellular conditions. Mutants
           show altered regulation of some pathways, but the
           precise function is unknown.
          Length = 594

 Score = 25.0 bits (55), Expect = 4.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 2   AFFFNNYNLDERGRFF 17
           A  +  +NL ERG  F
Sbjct: 491 ATAYALWNLQERGVMF 506


>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type.  Gluconate is
           derived from glucose in two steps. This model describes
           one form of gluconate kinase, belonging to the FGGY
           family of carbohydrate kinases. Gluconate kinase
           phosphoryates gluconate for entry into the
           Entner-Douderoff pathway.
          Length = 505

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 11  DERGRFFCYFLS 22
           DE+GR FCY L+
Sbjct: 273 DEKGRIFCYALT 284


>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional.
          Length = 339

 Score = 25.1 bits (54), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 21  LSLLIVDTLRSFSLFQHLWLKRLSSI 46
           L LLI+D+L+SF    H  L +L S+
Sbjct: 134 LVLLIIDSLKSFDDITHNILDKLRSL 159


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 841,346
Number of extensions: 35490
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 12
Length of query: 51
Length of database: 5,994,473
Length adjustment: 24
Effective length of query: 27
Effective length of database: 5,475,881
Effective search space: 147848787
Effective search space used: 147848787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.0 bits)