RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.930_1
         (51 letters)



>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
           nucleotide-binding, periplasm, translation; 2.80A
           {Escherichia coli K12} PDB: 3deg_C*
          Length = 599

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 2   AFFFNNYNLDERGRFFC 18
           A   +  N   RGR   
Sbjct: 496 ALITHRDNSQNRGRELV 512


>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
           elongation complex, transcription/DNA/RNA complex; 2.10A
           {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
           1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
           3e3j_C* 1aro_P 2pi4_A* 2pi5_A
          Length = 883

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 4   FFNNYNLDERGRFFCY 19
            +  YN+D RGR +  
Sbjct: 414 IWFPYNMDWRGRVYAV 429


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 429,484
Number of extensions: 12914
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 3
Length of query: 51
Length of database: 5,693,230
Length adjustment: 23
Effective length of query: 28
Effective length of database: 5,135,618
Effective search space: 143797304
Effective search space used: 143797304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.2 bits)