RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.930_1 (51 letters) >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* Length = 599 Score = 24.4 bits (53), Expect = 5.9 Identities = 5/17 (29%), Positives = 6/17 (35%) Query: 2 AFFFNNYNLDERGRFFC 18 A + N RGR Sbjct: 496 ALITHRDNSQNRGRELV 512 >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 Score = 24.0 bits (51), Expect = 7.9 Identities = 6/16 (37%), Positives = 9/16 (56%) Query: 4 FFNNYNLDERGRFFCY 19 + YN+D RGR + Sbjct: 414 IWFPYNMDWRGRVYAV 429 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.338 0.148 0.471 Gapped Lambda K H 0.267 0.0637 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 429,484 Number of extensions: 12914 Number of successful extensions: 46 Number of sequences better than 10.0: 1 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 3 Length of query: 51 Length of database: 5,693,230 Length adjustment: 23 Effective length of query: 28 Effective length of database: 5,135,618 Effective search space: 143797304 Effective search space used: 143797304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 50 (23.2 bits)