Query         537021.9.peg.931_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 04:08:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_931.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01742 SA_tandem_lipo Staph  37.4     6.1 0.00016   20.9  -1.0   37    3-44    145-181 (267)
  2 pfam05346 DUF747 Eukaryotic me  33.0      42  0.0011   16.4   2.7   29   10-38    141-169 (320)
  3 KOG1467 consensus               20.9      72  0.0018   15.1   2.1   19   17-35    250-268 (556)
  4 TIGR00525 folB dihydroneopteri  17.7      84  0.0021   14.8   1.9   22   22-43     67-88  (118)
  5 KOG2052 consensus               15.6 1.1E+02  0.0028   14.1   2.8   32    8-41    391-422 (513)
  6 COG5346 Predicted membrane pro  15.4 1.1E+02  0.0028   14.1   3.9   38    4-42     64-109 (136)
  7 KOG4120 consensus               13.6      83  0.0021   14.8   1.0   34   11-44    273-313 (426)
  8 TIGR01561 gde_arch glycogen de  11.3 1.5E+02  0.0038   13.4   1.7   15   23-37    254-268 (575)
  9 pfam08583 Cmc1 Cytochrome c ox  11.0 1.5E+02  0.0039   13.4   1.7   17   17-33      7-23  (69)
 10 KOG1692 consensus               10.1   1E+02  0.0026   14.3   0.5   11   32-42    168-178 (201)

No 1  
>TIGR01742 SA_tandem_lipo Staphylococcus tandem lipoproteins; InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins..
Probab=37.37  E-value=6.1  Score=20.89  Aligned_cols=37  Identities=46%  Similarity=0.652  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             340236666411100101059999999999999999998524
Q 537021.9.peg.9    3 IKNQAVLTKKVDDKNQANARCADLIESFALVILWSIFKKLKN   44 (45)
Q Consensus         3 iknqavltkkvddknqanarcadliesfalvilwsifkklkn   44 (45)
                      .-|.-|+||.|.|++--+     -||+|.+.+-..=|+.|.|
T Consensus       145 vnNkIv~~k~vkD~~LK~-----~IEnf~ff~QyG~l~~l~~  181 (267)
T TIGR01742       145 VNNKIVLTKDVKDKNLKK-----EIENFKFFIQYGNLKELKN  181 (267)
T ss_pred             ECCEEEEECCCCCHHHHH-----HHHHHHHHHEECCCHHHHH
T ss_conf             636388623732656644-----5421000010013022422


No 2  
>pfam05346 DUF747 Eukaryotic membrane protein family. This family is a family of eukaryotic membrane proteins. It was previously annotated as including a putative receptor for human cytomegalovirus gH but this has has since been disputed. Analysis of the mouse Tapt1 protein (transmembrane anterior posterior transformation 1) has shown it to be involved in patterning of the vertebrate axial skeleton.
Probab=33.00  E-value=42  Score=16.40  Aligned_cols=29  Identities=34%  Similarity=0.618  Sum_probs=23.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66411100101059999999999999999
Q 537021.9.peg.9   10 TKKVDDKNQANARCADLIESFALVILWSI   38 (45)
Q Consensus        10 tkkvddknqanarcadliesfalvilwsi   38 (45)
                      -||.|..|--.--|+|.+|-|.+.+.-.|
T Consensus       141 FKkf~kenLfqi~~sDi~ERF~l~~~l~i  169 (320)
T pfam05346       141 FKKFDKESLFQITCADVVERFQLLLMLLI  169 (320)
T ss_pred             HHHCCCCCEEHHHHHHHHHHHHHHHHHHH
T ss_conf             63146355211016789999999999999


No 3  
>KOG1467 consensus
Probab=20.94  E-value=72  Score=15.12  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             0101059999999999999
Q 537021.9.peg.9   17 NQANARCADLIESFALVIL   35 (45)
Q Consensus        17 nqanarcadliesfalvil   35 (45)
                      -..|+||-++++.|--||-
T Consensus       250 ~GsnaRCIa~L~afqevi~  268 (556)
T KOG1467         250 SGSNARCIAMLQAFQEVIK  268 (556)
T ss_pred             CCCCHHHHHHHHHHHHHHH
T ss_conf             8940899999999999998


No 4  
>TIGR00525 folB dihydroneopterin aldolase; InterPro: IPR006156    Dihydroneopterin aldolase catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. The enzyme form a homo-octamers. Aldolase can use L-threo-dihydroneopterin and D-erythro-dihydroneopterin as substrates for the formation of 6-hydroxymethyldihydropterin, but it can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin at appreciable velocity . ; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid and derivative metabolic process.
Probab=17.74  E-value=84  Score=14.77  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5999999999999999999852
Q 537021.9.peg.9   22 RCADLIESFALVILWSIFKKLK   43 (45)
Q Consensus        22 rcadliesfalvilwsifkklk   43 (45)
                      +-.+|||.+|..|+=.+|+...
T Consensus        67 ~~~~LIEtlA~~~a~~~~~~~~   88 (118)
T TIGR00525        67 KPRKLIETLAERIADRLLADFP   88 (118)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9730124578999999886178


No 5  
>KOG2052 consensus
Probab=15.65  E-value=1.1e+02  Score=14.14  Aligned_cols=32  Identities=38%  Similarity=0.645  Sum_probs=19.9

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6666411100101059999999999999999998
Q 537021.9.peg.9    8 VLTKKVDDKNQANARCADLIESFALVILWSIFKK   41 (45)
Q Consensus         8 vltkkvddknqanarcadliesfalvilwsifkk   41 (45)
                      ||....+.+.-..-+||| |-||.|| +|.|-..
T Consensus       391 vLdetin~~~Fesyk~AD-IYafgLV-~WEiarR  422 (513)
T KOG2052         391 VLDETINMKHFESYKRAD-IYAFGLV-LWEIARR  422 (513)
T ss_pred             HHHHHCCHHHHHHHHHHH-HHHHHHH-HHHHHHH
T ss_conf             753114756765675788-8887999-9999988


No 6  
>COG5346 Predicted membrane protein [Function unknown]
Probab=15.37  E-value=1.1e+02  Score=14.10  Aligned_cols=38  Identities=34%  Similarity=0.378  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHCCHHHH-HHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             4023666641110010-105-------99999999999999999985
Q 537021.9.peg.9    4 KNQAVLTKKVDDKNQA-NAR-------CADLIESFALVILWSIFKKL   42 (45)
Q Consensus         4 knqavltkkvddknqa-nar-------cadliesfalvilwsifkkl   42 (45)
                      |.||+- .+.|.||+. +.|       -+-|+--|+.-..||||.+.
T Consensus        64 kEQahr-H~~~~k~~~~q~r~~~~~~~tril~liFgi~LVvsi~~~t  109 (136)
T COG5346          64 KEQAHR-HAIDLKNLKIQRRGQLYAKLTRILLLIFGIFLVVSIFPKT  109 (136)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999-9999865778898899999999999999999999999999


No 7  
>KOG4120 consensus
Probab=13.58  E-value=83  Score=14.79  Aligned_cols=34  Identities=29%  Similarity=0.497  Sum_probs=25.6

Q ss_pred             HHHCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             64111001-------01059999999999999999998524
Q 537021.9.peg.9   11 KKVDDKNQ-------ANARCADLIESFALVILWSIFKKLKN   44 (45)
Q Consensus        11 kkvddknq-------anarcadliesfalvilwsifkklkn   44 (45)
                      .|++|.|.       ..||||.+-..-.-|-+|..||++.+
T Consensus       273 ~k~~dt~tfv~VmpsSSaRcAq~pra~dKv~~y~~lk~~rd  313 (426)
T KOG4120         273 EKFGDTNTFVGVMPSSSARCAQYPRAEDKVNLYNLLKEERD  313 (426)
T ss_pred             CCCCCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             55798641799714751443148725433059999999999


No 8  
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative; InterPro: IPR006451   These sequences are largely uncharacterised archaeal proteins which include those from Methanosarcina acetivorans and Sulfolobus solfataricus. The group also contains sequences from the Gram-positive bacterium Clostridium perfringens and the Cyanobacterium Nostoc sp. All the sequences display weak relatedness to the characterised eukaryotic glycogen debranching enzyme of S. cerevisiae. .
Probab=11.27  E-value=1.5e+02  Score=13.42  Aligned_cols=15  Identities=53%  Similarity=0.671  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q 537021.9.peg.9   23 CADLIESFALVILWS   37 (45)
Q Consensus        23 cadliesfalvilws   37 (45)
                      -..|||||||-+|-.
T Consensus       254 dskliesfalkllra  268 (575)
T TIGR01561       254 DSKLIESFALKLLRA  268 (575)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             256788899888740


No 9  
>pfam08583 Cmc1 Cytochrome c oxidase biogenesis protein Cmc1 like. Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=10.95  E-value=1.5e+02  Score=13.36  Aligned_cols=17  Identities=35%  Similarity=0.702  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             01010599999999999
Q 537021.9.peg.9   17 NQANARCADLIESFALV   33 (45)
Q Consensus        17 nqanarcadliesfalv   33 (45)
                      .++...|+++|..|+--
T Consensus         7 ~~~~~~C~~~i~a~~eC   23 (69)
T pfam08583         7 KKARKKCAELIKALAEC   23 (69)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             88898779999999999


No 10 
>KOG1692 consensus
Probab=10.07  E-value=1e+02  Score=14.34  Aligned_cols=11  Identities=64%  Similarity=1.226  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999985
Q 537021.9.peg.9   32 LVILWSIFKKL   42 (45)
Q Consensus        32 lvilwsifkkl   42 (45)
                      -|++||||.-+
T Consensus       168 RVv~wsife~~  178 (201)
T KOG1692         168 RVVLWSIFEAL  178 (201)
T ss_pred             EEEHHHHHHHH
T ss_conf             04468888889


Done!