Query         537021.9.peg.937_1
Match_columns 48
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 07:24:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_937.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3gwl_A P14, FAD-linked sulfhy  18.6      43  0.0013   16.4   0.9   15   28-42     13-27  (106)
  2 >3bz1_I Photosystem II reactio  18.1      82  0.0024   14.9   2.2   19   16-34      1-19  (38)
  3 >2hj3_A Sulfhydryl oxidase ERV  16.8      50  0.0015   16.0   0.9   15   28-42     19-33  (125)
  4 >1jr8_A ERV2 protein, mitochon  15.3      58  0.0017   15.7   0.9   15   28-42     17-31  (117)
  5 >1oqc_A ALR, augmenter of live  14.3      64  0.0019   15.5   0.9   15   28-42     28-42  (125)
  6 >3gwn_A Probable FAD-linked su  12.3      79  0.0023   15.0   0.9   14   28-41     15-28  (114)
  7 >2qyu_A Secreted effector prot   7.9 1.9E+02  0.0056   13.0   2.6   31    4-36     11-41  (74)
  8 >2fsv_C NAD(P) transhydrogenas   7.0 1.4E+02  0.0042   13.7   0.5   14   34-47    169-183 (203)
  9 >2j6i_A Formate dehydrogenase;   6.3 2.2E+02  0.0065   12.7   1.1   12    3-14    132-143 (168)
 10 >3l0m_A DRRA, SIDM; GEF/GDF of   6.2      92  0.0027   14.7  -0.8   25    6-30      7-31  (105)

No 1  
>>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V} (A:)
Probab=18.61  E-value=43  Score=16.36  Aligned_cols=15  Identities=20%  Similarity=0.348  Sum_probs=12.0

Q ss_pred             HHHHHCCHHHCCCCE
Q ss_conf             998500001005851
Q 537021.9.peg.9   28 ILFHSMTGYYIDNPL   42 (48)
Q Consensus        28 ilfhsmtgyyidnpl   42 (48)
                      .|||+++-+|-++|-
T Consensus        13 ~llH~~a~~~p~~pt   27 (106)
T 3gwl_A           13 RSLHLYAIFFSDAPS   27 (106)
T ss_dssp             HHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999999955889999


No 2  
>>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3a0b_I* 3a0h_I* (I:)
Probab=18.11  E-value=82  Score=14.92  Aligned_cols=19  Identities=32%  Similarity=0.455  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHCC
Q ss_conf             3677999999999985000
Q 537021.9.peg.9   16 MSTLHLFILIKVILFHSMT   34 (48)
Q Consensus        16 mstlhlfilikvilfhsmt   34 (48)
                      |-||.+|..+-|+.|-|.-
T Consensus         1 MltLKi~Vy~vV~fFvslF   19 (38)
T 3bz1_I            1 METLKITVYIVVTFFVLLF   19 (38)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEHHHHHHHHHHHH
T ss_conf             9227874266899999999


No 3  
>>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} (A:)
Probab=16.82  E-value=50  Score=16.02  Aligned_cols=15  Identities=20%  Similarity=0.625  Sum_probs=10.9

Q ss_pred             HHHHHCCHHHCCCCE
Q ss_conf             998500001005851
Q 537021.9.peg.9   28 ILFHSMTGYYIDNPL   42 (48)
Q Consensus        28 ilfhsmtgyyidnpl   42 (48)
                      .|||+|+-+|-++|-
T Consensus        19 ~llHt~a~~~~~~pt   33 (125)
T 2hj3_A           19 TFLHTLAAQYPEKPT   33 (125)
T ss_dssp             HHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999999987889989


No 4  
>>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} (A:)
Probab=15.28  E-value=58  Score=15.69  Aligned_cols=15  Identities=27%  Similarity=0.600  Sum_probs=10.9

Q ss_pred             HHHHHCCHHHCCCCE
Q ss_conf             998500001005851
Q 537021.9.peg.9   28 ILFHSMTGYYIDNPL   42 (48)
Q Consensus        28 ilfhsmtgyyidnpl   42 (48)
                      .|||+|+-+|-++|-
T Consensus        17 ~llHt~a~~~~~~pt   31 (117)
T 1jr8_A           17 KYFHTLLARFPDEPT   31 (117)
T ss_dssp             HHHHHHHHTSCSSCC
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999999967889989


No 5  
>>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase, helix-turn- helix, oxidoreductase; HET: FAD; 1.80A {Rattus norvegicus} (A:)
Probab=14.30  E-value=64  Score=15.47  Aligned_cols=15  Identities=33%  Similarity=0.809  Sum_probs=11.6

Q ss_pred             HHHHHCCHHHCCCCE
Q ss_conf             998500001005851
Q 537021.9.peg.9   28 ILFHSMTGYYIDNPL   42 (48)
Q Consensus        28 ilfhsmtgyyidnpl   42 (48)
                      .|||+++-+|-++|-
T Consensus        28 ~llHtla~~~p~~pt   42 (125)
T 1oqc_A           28 AFLHTLAAYYPDMPT   42 (125)
T ss_dssp             HHHHHHHHTSCSSCC
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999999947889979


No 6  
>>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprotein, oxidoreductase; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus} (A:)
Probab=12.27  E-value=79  Score=14.99  Aligned_cols=14  Identities=36%  Similarity=0.309  Sum_probs=9.1

Q ss_pred             HHHHHCCHHHCCCC
Q ss_conf             99850000100585
Q 537021.9.peg.9   28 ILFHSMTGYYIDNP   41 (48)
Q Consensus        28 ilfhsmtgyyidnp   41 (48)
                      .|||+++-+|-++|
T Consensus        15 ~llH~~a~~~~~~p   28 (114)
T 3gwn_A           15 TFNHAVTFGYPLNP   28 (114)
T ss_dssp             HHHHHHHHTSCSSC
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             99999998776798


No 7  
>>2qyu_A Secreted effector protein; ubiquitin E3 ligase; HET: B3P; 2.10A {Salmonella typhimurium SL1344} PDB: 2qza_A (A:287-360)
Probab=7.91  E-value=1.9e+02  Score=13.05  Aligned_cols=31  Identities=39%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             677676417001367799999999998500001
Q 537021.9.peg.9    4 SILDGFFSNKSRMSTLHLFILIKVILFHSMTGY   36 (48)
Q Consensus         4 sildgffsnksrmstlhlfilikvilfhsmtgy   36 (48)
                      -.||.|-.|...|.|- --..-.|| .|.|||.
T Consensus        11 vlldsfdrnsaamtth-sglfnqvi-lhcmtgv   41 (74)
T 2qyu_A           11 VLLDSFDRNSAAMTTH-SGLFNQVI-LHCMTGV   41 (74)
T ss_dssp             HHHHHHHHCTTHHHHT-HHHHHHHH-HHHHHCT
T ss_pred             HHHHHHHHCHHHHHHC-CCHHHHHH-HHHHHCC
T ss_conf             9989987577988635-40899999-9998605


No 8  
>>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} (C:)
Probab=6.98  E-value=1.4e+02  Score=13.72  Aligned_cols=14  Identities=36%  Similarity=0.821  Sum_probs=8.9

Q ss_pred             CHHH-CCCCEECCCC
Q ss_conf             0010-0585112347
Q 537021.9.peg.9   34 TGYY-IDNPLFCSEK   47 (48)
Q Consensus        34 tgyy-idnplfcsek   47 (48)
                      +||- ||||||-.++
T Consensus       169 ~Gyagv~NpLF~~~n  183 (203)
T 2fsv_C          169 SGYAGVENELFFRNN  183 (203)
T ss_dssp             CCTTCCCCGGGGSTT
T ss_pred             CCCCCCCCCCEECCC
T ss_conf             885789775355388


No 9  
>>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:1-117,A:314-364)
Probab=6.25  E-value=2.2e+02  Score=12.75  Aligned_cols=12  Identities=42%  Similarity=0.739  Sum_probs=9.4

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             667767641700
Q 537021.9.peg.9    3 KSILDGFFSNKS   14 (48)
Q Consensus         3 ksildgffsnks   14 (48)
                      |.||+-||+++.
T Consensus       132 ~~~~~~~~~~~~  143 (168)
T 2j6i_A          132 VNILESFFTGKF  143 (168)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999983999


No 10 
>>3l0m_A DRRA, SIDM; GEF/GDF of RAB1, A NEW novel phosphatidylinositol 4- phosphate-binding domain; 3.45A {Legionella pneumophila} (A:232-336)
Probab=6.20  E-value=92  Score=14.67  Aligned_cols=25  Identities=20%  Similarity=0.095  Sum_probs=19.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             7676417001367799999999998
Q 537021.9.peg.9    6 LDGFFSNKSRMSTLHLFILIKVILF   30 (48)
Q Consensus         6 ldgffsnksrmstlhlfilikvilf   30 (48)
                      .++|+|+|.+.+.++-=+|-++||-
T Consensus         7 ~~~f~~~ke~y~~~kGD~LK~~IL~   31 (105)
T 3l0m_A            7 TENFKNVKEKYQQXRGDALKTEILA   31 (105)
T ss_dssp             SCSCSCCCTTSSSCCTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf             5333566999998501188999999


Done!