Query 537021.9.peg.937_1 Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 07:24:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_937.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3gwl_A P14, FAD-linked sulfhy 18.6 43 0.0013 16.4 0.9 15 28-42 13-27 (106) 2 >3bz1_I Photosystem II reactio 18.1 82 0.0024 14.9 2.2 19 16-34 1-19 (38) 3 >2hj3_A Sulfhydryl oxidase ERV 16.8 50 0.0015 16.0 0.9 15 28-42 19-33 (125) 4 >1jr8_A ERV2 protein, mitochon 15.3 58 0.0017 15.7 0.9 15 28-42 17-31 (117) 5 >1oqc_A ALR, augmenter of live 14.3 64 0.0019 15.5 0.9 15 28-42 28-42 (125) 6 >3gwn_A Probable FAD-linked su 12.3 79 0.0023 15.0 0.9 14 28-41 15-28 (114) 7 >2qyu_A Secreted effector prot 7.9 1.9E+02 0.0056 13.0 2.6 31 4-36 11-41 (74) 8 >2fsv_C NAD(P) transhydrogenas 7.0 1.4E+02 0.0042 13.7 0.5 14 34-47 169-183 (203) 9 >2j6i_A Formate dehydrogenase; 6.3 2.2E+02 0.0065 12.7 1.1 12 3-14 132-143 (168) 10 >3l0m_A DRRA, SIDM; GEF/GDF of 6.2 92 0.0027 14.7 -0.8 25 6-30 7-31 (105) No 1 >>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V} (A:) Probab=18.61 E-value=43 Score=16.36 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.0 Q ss_pred HHHHHCCHHHCCCCE Q ss_conf 998500001005851 Q 537021.9.peg.9 28 ILFHSMTGYYIDNPL 42 (48) Q Consensus 28 ilfhsmtgyyidnpl 42 (48) .|||+++-+|-++|- T Consensus 13 ~llH~~a~~~p~~pt 27 (106) T 3gwl_A 13 RSLHLYAIFFSDAPS 27 (106) T ss_dssp HHHHHHHHHSCSSCC T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999955889999 No 2 >>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3a0b_I* 3a0h_I* (I:) Probab=18.11 E-value=82 Score=14.92 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 3677999999999985000 Q 537021.9.peg.9 16 MSTLHLFILIKVILFHSMT 34 (48) Q Consensus 16 mstlhlfilikvilfhsmt 34 (48) |-||.+|..+-|+.|-|.- T Consensus 1 MltLKi~Vy~vV~fFvslF 19 (38) T 3bz1_I 1 METLKITVYIVVTFFVLLF 19 (38) T ss_dssp CHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEHHHHHHHHHHHH T ss_conf 9227874266899999999 No 3 >>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} (A:) Probab=16.82 E-value=50 Score=16.02 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=10.9 Q ss_pred HHHHHCCHHHCCCCE Q ss_conf 998500001005851 Q 537021.9.peg.9 28 ILFHSMTGYYIDNPL 42 (48) Q Consensus 28 ilfhsmtgyyidnpl 42 (48) .|||+|+-+|-++|- T Consensus 19 ~llHt~a~~~~~~pt 33 (125) T 2hj3_A 19 TFLHTLAAQYPEKPT 33 (125) T ss_dssp HHHHHHHHHSCSSCC T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999987889989 No 4 >>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} (A:) Probab=15.28 E-value=58 Score=15.69 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=10.9 Q ss_pred HHHHHCCHHHCCCCE Q ss_conf 998500001005851 Q 537021.9.peg.9 28 ILFHSMTGYYIDNPL 42 (48) Q Consensus 28 ilfhsmtgyyidnpl 42 (48) .|||+|+-+|-++|- T Consensus 17 ~llHt~a~~~~~~pt 31 (117) T 1jr8_A 17 KYFHTLLARFPDEPT 31 (117) T ss_dssp HHHHHHHHTSCSSCC T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999967889989 No 5 >>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase, helix-turn- helix, oxidoreductase; HET: FAD; 1.80A {Rattus norvegicus} (A:) Probab=14.30 E-value=64 Score=15.47 Aligned_cols=15 Identities=33% Similarity=0.809 Sum_probs=11.6 Q ss_pred HHHHHCCHHHCCCCE Q ss_conf 998500001005851 Q 537021.9.peg.9 28 ILFHSMTGYYIDNPL 42 (48) Q Consensus 28 ilfhsmtgyyidnpl 42 (48) .|||+++-+|-++|- T Consensus 28 ~llHtla~~~p~~pt 42 (125) T 1oqc_A 28 AFLHTLAAYYPDMPT 42 (125) T ss_dssp HHHHHHHHTSCSSCC T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999947889979 No 6 >>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprotein, oxidoreductase; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus} (A:) Probab=12.27 E-value=79 Score=14.99 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=9.1 Q ss_pred HHHHHCCHHHCCCC Q ss_conf 99850000100585 Q 537021.9.peg.9 28 ILFHSMTGYYIDNP 41 (48) Q Consensus 28 ilfhsmtgyyidnp 41 (48) .|||+++-+|-++| T Consensus 15 ~llH~~a~~~~~~p 28 (114) T 3gwn_A 15 TFNHAVTFGYPLNP 28 (114) T ss_dssp HHHHHHHHTSCSSC T ss_pred HHHHHHHHHCCCCC T ss_conf 99999998776798 No 7 >>2qyu_A Secreted effector protein; ubiquitin E3 ligase; HET: B3P; 2.10A {Salmonella typhimurium SL1344} PDB: 2qza_A (A:287-360) Probab=7.91 E-value=1.9e+02 Score=13.05 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=20.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 677676417001367799999999998500001 Q 537021.9.peg.9 4 SILDGFFSNKSRMSTLHLFILIKVILFHSMTGY 36 (48) Q Consensus 4 sildgffsnksrmstlhlfilikvilfhsmtgy 36 (48) -.||.|-.|...|.|- --..-.|| .|.|||. T Consensus 11 vlldsfdrnsaamtth-sglfnqvi-lhcmtgv 41 (74) T 2qyu_A 11 VLLDSFDRNSAAMTTH-SGLFNQVI-LHCMTGV 41 (74) T ss_dssp HHHHHHHHCTTHHHHT-HHHHHHHH-HHHHHCT T ss_pred HHHHHHHHCHHHHHHC-CCHHHHHH-HHHHHCC T ss_conf 9989987577988635-40899999-9998605 No 8 >>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} (C:) Probab=6.98 E-value=1.4e+02 Score=13.72 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=8.9 Q ss_pred CHHH-CCCCEECCCC Q ss_conf 0010-0585112347 Q 537021.9.peg.9 34 TGYY-IDNPLFCSEK 47 (48) Q Consensus 34 tgyy-idnplfcsek 47 (48) +||- ||||||-.++ T Consensus 169 ~Gyagv~NpLF~~~n 183 (203) T 2fsv_C 169 SGYAGVENELFFRNN 183 (203) T ss_dssp CCTTCCCCGGGGSTT T ss_pred CCCCCCCCCCEECCC T ss_conf 885789775355388 No 9 >>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:1-117,A:314-364) Probab=6.25 E-value=2.2e+02 Score=12.75 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.4 Q ss_pred HHHHHHHHCCCC Q ss_conf 667767641700 Q 537021.9.peg.9 3 KSILDGFFSNKS 14 (48) Q Consensus 3 ksildgffsnks 14 (48) |.||+-||+++. T Consensus 132 ~~~~~~~~~~~~ 143 (168) T 2j6i_A 132 VNILESFFTGKF 143 (168) T ss_dssp HHHHHHHHTTCC T ss_pred HHHHHHHHCCCC T ss_conf 999999983999 No 10 >>3l0m_A DRRA, SIDM; GEF/GDF of RAB1, A NEW novel phosphatidylinositol 4- phosphate-binding domain; 3.45A {Legionella pneumophila} (A:232-336) Probab=6.20 E-value=92 Score=14.67 Aligned_cols=25 Identities=20% Similarity=0.095 Sum_probs=19.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 7676417001367799999999998 Q 537021.9.peg.9 6 LDGFFSNKSRMSTLHLFILIKVILF 30 (48) Q Consensus 6 ldgffsnksrmstlhlfilikvilf 30 (48) .++|+|+|.+.+.++-=+|-++||- T Consensus 7 ~~~f~~~ke~y~~~kGD~LK~~IL~ 31 (105) T 3l0m_A 7 TENFKNVKEKYQQXRGDALKTEILA 31 (105) T ss_dssp SCSCSCCCTTSSSCCTHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHH T ss_conf 5333566999998501188999999 Done!