RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.937_1
         (48 letters)



>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix
          bundle, homodimer, disulfide bond, flavoprotein,
          oxidoreductase; HET: FAD; 1.78A {Acanthamoeba polyphaga
          mimivirus} (A:)
          Length = 114

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 29 LFHSMTGYYIDNP 41
            H++T  Y  NP
Sbjct: 16 FNHAVTFGYPLNP 28


>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin
          adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A
          {Arabidopsis thaliana} (A:)
          Length = 125

 Score = 24.1 bits (52), Expect = 7.3
 Identities = 3/13 (23%), Positives = 6/13 (46%)

Query: 29 LFHSMTGYYIDNP 41
            H++   Y + P
Sbjct: 20 FLHTLAAQYPEKP 32


>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase,
          helix-turn- helix, oxidoreductase; HET: FAD; 1.80A
          {Rattus norvegicus} (A:)
          Length = 125

 Score = 23.7 bits (51), Expect = 8.6
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 29 LFHSMTGYYIDNP 41
            H++  YY D P
Sbjct: 29 FLHTLAAYYPDMP 41


>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix
          bundle, cytoplasm, disulfide bond, flavoprotein, late
          protein; HET: FAD; 2.10A {African swine fever virus
          BA71V} (A:)
          Length = 106

 Score = 23.7 bits (51), Expect = 10.0
 Identities = 3/13 (23%), Positives = 5/13 (38%)

Query: 29 LFHSMTGYYIDNP 41
            H    ++ D P
Sbjct: 14 SLHLYAIFFSDAP 26


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.143    0.423 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 342,095
Number of extensions: 9119
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 5
Length of query: 48
Length of database: 4,956,049
Length adjustment: 19
Effective length of query: 29
Effective length of database: 4,313,754
Effective search space: 125098866
Effective search space used: 125098866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.3 bits)