Query         537021.9.peg.942_1
Match_columns 50
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 03:34:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_942.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1yku_A Hypothetical protein PX  15.7      39  0.0017   15.4   0.9   41    7-47     66-115 (136)
  2 3g1g_A GAG polyprotein, capsid   5.6 1.7E+02  0.0071   12.1   1.6   14   35-48     30-43  (87)
  3 2euc_A Hypothetical protein YF   4.7   1E+02  0.0042   13.2  -0.6   15   28-43     76-90  (130)
  4 3kz5_E Protein SOPB; partition   4.6      31  0.0013   15.9  -3.3   20   14-33     28-47  (52)
  5 2e62_A Protein AT5G25060; CWF2   4.4 2.1E+02  0.0086   11.6   1.6   14    7-20     43-56  (61)
  6 3da5_A Argonaute; PAZ domain,    3.7     3.9 0.00016   20.6  -8.5   21    5-25     32-52  (128)
  7 1pp9_J Ubiquinol-cytochrome C    3.5 2.5E+02    0.01   11.2   0.8   10    1-10     13-22  (62)
  8 3bww_A Protein of unknown func   3.1 2.7E+02   0.011   11.0   0.9   17   29-45    105-121 (307)
  9 2osz_A Nucleoporin P58/P45; NP   2.9 2.4E+02    0.01   11.3   0.0   39    7-45      9-52  (93)
 10 1xk5_A Snurportin-1; protein-R   2.7      79  0.0033   13.8  -2.7    6   44-49     75-80  (204)

No 1  
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis}
Probab=15.67  E-value=39  Score=15.35  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHH--------HHHHHHCCCCEEEEEECCHHHHHHHH-HHHH
Q ss_conf             89998877899--------99996212102012215224789999-9987
Q 537021.9.peg.9    7 MFRKVACERKR--------VYKSCVEQNEVLLTLLPFPLTAQMLS-IIDC   47 (50)
Q Consensus         7 mfrkvacerkr--------vykscveqnevlltllpfpltaqmls-iidc   47 (50)
                      .-.|+|-||-.        ||..++..+|++-.+.--|++.+-|. +||-
T Consensus        66 la~KiA~ER~eA~~NIgeFVYN~N~GR~ei~~~l~~~~~~~~eL~~~I~k  115 (136)
T 1yku_A           66 TSKKIARERIDAKVNIAEFIHNTNVAKIEIMNILTLLNPDLQQYQALVKK  115 (136)
T ss_dssp             HHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999865125799999872230999999998289999999999999


No 2  
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=5.57  E-value=1.7e+02  Score=12.06  Aligned_cols=14  Identities=43%  Similarity=0.807  Sum_probs=9.5

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             22478999999876
Q 537021.9.peg.9   35 FPLTAQMLSIIDCI   48 (50)
Q Consensus        35 fpltaqmlsiidci   48 (50)
                      .|-.||-.-||||.
T Consensus        30 Lp~~A~~pVi~DCl   43 (87)
T 3g1g_A           30 LPPSARAPVIIDCF   43 (87)
T ss_dssp             SCGGGHHHHHHHHH
T ss_pred             CCHHHCCCCHHHHH
T ss_conf             86676388199999


No 3  
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=4.68  E-value=1e+02  Score=13.24  Aligned_cols=15  Identities=53%  Similarity=0.846  Sum_probs=8.7

Q ss_pred             EEEEEECCHHHHHHHH
Q ss_conf             2012215224789999
Q 537021.9.peg.9   28 VLLTLLPFPLTAQMLS   43 (50)
Q Consensus        28 vlltllpfpltaqmls   43 (50)
                      -|.+|+|| .|+.|+.
T Consensus        76 YL~~L~p~-iT~DM~~   90 (130)
T 2euc_A           76 YLSTLLPY-VTADMFE   90 (130)
T ss_dssp             HHHHHGGG-CCHHHHH
T ss_pred             HHHHHHHH-HHHHHHH
T ss_conf             99999999-8899999


No 4  
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=4.63  E-value=31  Score=15.94  Aligned_cols=20  Identities=40%  Similarity=0.692  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHCCCCEEEEEE
Q ss_conf             78999999621210201221
Q 537021.9.peg.9   14 ERKRVYKSCVEQNEVLLTLL   33 (50)
Q Consensus        14 erkrvykscveqnevlltll   33 (50)
                      .|.|+-+.|.|++|.+|.-|
T Consensus        28 Drsr~p~~Cie~ieail~~l   47 (52)
T 3kz5_E           28 DRSRVPTECIEKIEAILKEL   47 (52)
T ss_dssp             ETTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
T ss_conf             31118689999999999983


No 5  
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=4.41  E-value=2.1e+02  Score=11.62  Aligned_cols=14  Identities=43%  Similarity=0.470  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             89998877899999
Q 537021.9.peg.9    7 MFRKVACERKRVYK   20 (50)
Q Consensus         7 mfrkvacerkrvyk   20 (50)
                      .-||||-.|||.-.
T Consensus        43 ierkVa~hRkrLes   56 (61)
T 2e62_A           43 IERKVEINRKRLEV   56 (61)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999977


No 6  
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=3.72  E-value=3.9  Score=20.60  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC
Q ss_conf             678999887789999996212
Q 537021.9.peg.9    5 NSMFRKVACERKRVYKSCVEQ   25 (50)
Q Consensus         5 nsmfrkvacerkrvykscveq   25 (50)
                      |-|.|..|.+.|-|||.|.+.
T Consensus        32 ~~~l~dias~~k~vykp~f~~   52 (128)
T 3da5_A           32 TILLRDIASEHKVVYKPIFKR   52 (128)
T ss_dssp             TEEEEETTSSSCCEEEECBCT
T ss_pred             CEEHHHHCCHHHHHHHHHHHH
T ss_conf             330886413124577688998


No 7  
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 1bcc_J* 2bcc_J* 3bcc_J* 1qcr_J* ...
Probab=3.53  E-value=2.5e+02  Score=11.21  Aligned_cols=10  Identities=40%  Similarity=0.643  Sum_probs=5.6

Q ss_pred             CCCHHHHHHH
Q ss_conf             9523678999
Q 537021.9.peg.9    1 VFARNSMFRK   10 (50)
Q Consensus         1 vfarnsmfrk   10 (50)
                      +|-|||.|--
T Consensus        13 lfrRnStf~~   22 (62)
T 1pp9_J           13 LFRRTSTFAL   22 (62)
T ss_dssp             TTSSHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9971589999


No 8  
>3bww_A Protein of unknown function DUF692/COG3220; YP_719350.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Haemophilus somnus 129PT}
Probab=3.13  E-value=2.7e+02  Score=10.99  Aligned_cols=17  Identities=35%  Similarity=0.649  Sum_probs=11.2

Q ss_pred             EEEEECCHHHHHHHHHH
Q ss_conf             01221522478999999
Q 537021.9.peg.9   29 LLTLLPFPLTAQMLSII   45 (50)
Q Consensus        29 lltllpfpltaqmlsii   45 (50)
                      +.-|||.|.|...+.++
T Consensus       105 ~~dLLPlP~T~e~l~~v  121 (307)
T 3bww_A          105 LYDLLPMPFTDEAVKHT  121 (307)
T ss_dssp             ---CCCBCCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHH
T ss_conf             47667867549999999


No 9  
>2osz_A Nucleoporin P58/P45; NPC, structure, structural protein; 2.85A {Rattus norvegicus}
Probab=2.94  E-value=2.4e+02  Score=11.27  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             HHHHHH---HHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHH
Q ss_conf             899988---7789999996212102012215--22478999999
Q 537021.9.peg.9    7 MFRKVA---CERKRVYKSCVEQNEVLLTLLP--FPLTAQMLSII   45 (50)
Q Consensus         7 mfrkva---cerkrvykscveqnevlltllp--fpltaqmlsii   45 (50)
                      .|.+++   -+|-..||.-+|+-|--|..++  -++|.|-|+-+
T Consensus         9 YF~~lv~~fe~rl~~yr~qIE~~E~hl~s~s~~~~~TPqdL~~~   52 (93)
T 2osz_A            9 YFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMA   52 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             99999999999999999999999999984468888999999999


No 10 
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=2.69  E-value=79  Score=13.79  Aligned_cols=6  Identities=83%  Similarity=1.929  Sum_probs=0.0

Q ss_pred             HHHHHH
Q ss_conf             998762
Q 537021.9.peg.9   44 IIDCIY   49 (50)
Q Consensus        44 iidciy   49 (50)
                      |.||||
T Consensus        75 ILDCIy   80 (204)
T 1xk5_A           75 ILDCIY   80 (204)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             899998


Done!