Query 537021.9.peg.942_1 Match_columns 50 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 03:34:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_942.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1yku_A Hypothetical protein PX 15.7 39 0.0017 15.4 0.9 41 7-47 66-115 (136) 2 3g1g_A GAG polyprotein, capsid 5.6 1.7E+02 0.0071 12.1 1.6 14 35-48 30-43 (87) 3 2euc_A Hypothetical protein YF 4.7 1E+02 0.0042 13.2 -0.6 15 28-43 76-90 (130) 4 3kz5_E Protein SOPB; partition 4.6 31 0.0013 15.9 -3.3 20 14-33 28-47 (52) 5 2e62_A Protein AT5G25060; CWF2 4.4 2.1E+02 0.0086 11.6 1.6 14 7-20 43-56 (61) 6 3da5_A Argonaute; PAZ domain, 3.7 3.9 0.00016 20.6 -8.5 21 5-25 32-52 (128) 7 1pp9_J Ubiquinol-cytochrome C 3.5 2.5E+02 0.01 11.2 0.8 10 1-10 13-22 (62) 8 3bww_A Protein of unknown func 3.1 2.7E+02 0.011 11.0 0.9 17 29-45 105-121 (307) 9 2osz_A Nucleoporin P58/P45; NP 2.9 2.4E+02 0.01 11.3 0.0 39 7-45 9-52 (93) 10 1xk5_A Snurportin-1; protein-R 2.7 79 0.0033 13.8 -2.7 6 44-49 75-80 (204) No 1 >1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} Probab=15.67 E-value=39 Score=15.35 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=29.5 Q ss_pred HHHHHHHHHHH--------HHHHHHCCCCEEEEEECCHHHHHHHH-HHHH Q ss_conf 89998877899--------99996212102012215224789999-9987 Q 537021.9.peg.9 7 MFRKVACERKR--------VYKSCVEQNEVLLTLLPFPLTAQMLS-IIDC 47 (50) Q Consensus 7 mfrkvacerkr--------vykscveqnevlltllpfpltaqmls-iidc 47 (50) .-.|+|-||-. ||..++..+|++-.+.--|++.+-|. +||- T Consensus 66 la~KiA~ER~eA~~NIgeFVYN~N~GR~ei~~~l~~~~~~~~eL~~~I~k 115 (136) T 1yku_A 66 TSKKIARERIDAKVNIAEFIHNTNVAKIEIMNILTLLNPDLQQYQALVKK 115 (136) T ss_dssp HHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999999865125799999872230999999998289999999999999 No 2 >3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus} Probab=5.57 E-value=1.7e+02 Score=12.06 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=9.5 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 22478999999876 Q 537021.9.peg.9 35 FPLTAQMLSIIDCI 48 (50) Q Consensus 35 fpltaqmlsiidci 48 (50) .|-.||-.-||||. T Consensus 30 Lp~~A~~pVi~DCl 43 (87) T 3g1g_A 30 LPPSARAPVIIDCF 43 (87) T ss_dssp SCGGGHHHHHHHHH T ss_pred CCHHHCCCCHHHHH T ss_conf 86676388199999 No 3 >2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1 Probab=4.68 E-value=1e+02 Score=13.24 Aligned_cols=15 Identities=53% Similarity=0.846 Sum_probs=8.7 Q ss_pred EEEEEECCHHHHHHHH Q ss_conf 2012215224789999 Q 537021.9.peg.9 28 VLLTLLPFPLTAQMLS 43 (50) Q Consensus 28 vlltllpfpltaqmls 43 (50) -|.+|+|| .|+.|+. T Consensus 76 YL~~L~p~-iT~DM~~ 90 (130) T 2euc_A 76 YLSTLLPY-VTADMFE 90 (130) T ss_dssp HHHHHGGG-CCHHHHH T ss_pred HHHHHHHH-HHHHHHH T ss_conf 99999999-8899999 No 4 >3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli} Probab=4.63 E-value=31 Score=15.94 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=12.6 Q ss_pred HHHHHHHHHHCCCCEEEEEE Q ss_conf 78999999621210201221 Q 537021.9.peg.9 14 ERKRVYKSCVEQNEVLLTLL 33 (50) Q Consensus 14 erkrvykscveqnevlltll 33 (50) .|.|+-+.|.|++|.+|.-| T Consensus 28 Drsr~p~~Cie~ieail~~l 47 (52) T 3kz5_E 28 DRSRVPTECIEKIEAILKEL 47 (52) T ss_dssp ETTTSCHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHH T ss_conf 31118689999999999983 No 5 >2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana} Probab=4.41 E-value=2.1e+02 Score=11.62 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 89998877899999 Q 537021.9.peg.9 7 MFRKVACERKRVYK 20 (50) Q Consensus 7 mfrkvacerkrvyk 20 (50) .-||||-.|||.-. T Consensus 43 ierkVa~hRkrLes 56 (61) T 2e62_A 43 IERKVEINRKRLEV 56 (61) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999977 No 6 >3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens} Probab=3.72 E-value=3.9 Score=20.60 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCC Q ss_conf 678999887789999996212 Q 537021.9.peg.9 5 NSMFRKVACERKRVYKSCVEQ 25 (50) Q Consensus 5 nsmfrkvacerkrvykscveq 25 (50) |-|.|..|.+.|-|||.|.+. T Consensus 32 ~~~l~dias~~k~vykp~f~~ 52 (128) T 3da5_A 32 TILLRDIASEHKVVYKPIFKR 52 (128) T ss_dssp TEEEEETTSSSCCEEEECBCT T ss_pred CEEHHHHCCHHHHHHHHHHHH T ss_conf 330886413124577688998 No 7 >1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 1bcc_J* 2bcc_J* 3bcc_J* 1qcr_J* ... Probab=3.53 E-value=2.5e+02 Score=11.21 Aligned_cols=10 Identities=40% Similarity=0.643 Sum_probs=5.6 Q ss_pred CCCHHHHHHH Q ss_conf 9523678999 Q 537021.9.peg.9 1 VFARNSMFRK 10 (50) Q Consensus 1 vfarnsmfrk 10 (50) +|-|||.|-- T Consensus 13 lfrRnStf~~ 22 (62) T 1pp9_J 13 LFRRTSTFAL 22 (62) T ss_dssp TTSSHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9971589999 No 8 >3bww_A Protein of unknown function DUF692/COG3220; YP_719350.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Haemophilus somnus 129PT} Probab=3.13 E-value=2.7e+02 Score=10.99 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=11.2 Q ss_pred EEEEECCHHHHHHHHHH Q ss_conf 01221522478999999 Q 537021.9.peg.9 29 LLTLLPFPLTAQMLSII 45 (50) Q Consensus 29 lltllpfpltaqmlsii 45 (50) +.-|||.|.|...+.++ T Consensus 105 ~~dLLPlP~T~e~l~~v 121 (307) T 3bww_A 105 LYDLLPMPFTDEAVKHT 121 (307) T ss_dssp ---CCCBCCCHHHHHHH T ss_pred CCCCCCCCCCHHHHHHH T ss_conf 47667867549999999 No 9 >2osz_A Nucleoporin P58/P45; NPC, structure, structural protein; 2.85A {Rattus norvegicus} Probab=2.94 E-value=2.4e+02 Score=11.27 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=26.0 Q ss_pred HHHHHH---HHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHH Q ss_conf 899988---7789999996212102012215--22478999999 Q 537021.9.peg.9 7 MFRKVA---CERKRVYKSCVEQNEVLLTLLP--FPLTAQMLSII 45 (50) Q Consensus 7 mfrkva---cerkrvykscveqnevlltllp--fpltaqmlsii 45 (50) .|.+++ -+|-..||.-+|+-|--|..++ -++|.|-|+-+ T Consensus 9 YF~~lv~~fe~rl~~yr~qIE~~E~hl~s~s~~~~~TPqdL~~~ 52 (93) T 2osz_A 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMA 52 (93) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 99999999999999999999999999984468888999999999 No 10 >1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens} Probab=2.69 E-value=79 Score=13.79 Aligned_cols=6 Identities=83% Similarity=1.929 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 998762 Q 537021.9.peg.9 44 IIDCIY 49 (50) Q Consensus 44 iidciy 49 (50) |.|||| T Consensus 75 ILDCIy 80 (204) T 1xk5_A 75 ILDCIY 80 (204) T ss_dssp EEEEEE T ss_pred EEEEEE T ss_conf 899998 Done!