RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.942_1 (50 letters) >gnl|CDD|152330 pfam11894, DUF3414, Protein of unknown function (DUF3414). This family of proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif. Length = 1611 Score = 29.2 bits (66), Expect = 0.25 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 1 VFARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQMLSIIDCIYK 50 V RN R++ + + S V+ +VLLT P + I++ + Sbjct: 1218 VTERNRS-RELRSAQLKALHSWVQLVQVLLTDCPLSGDRRSNFILEILQA 1266 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.139 0.416 Gapped Lambda K H 0.267 0.0722 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 728,205 Number of extensions: 26443 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 2 Length of query: 50 Length of database: 5,994,473 Length adjustment: 23 Effective length of query: 27 Effective length of database: 5,497,489 Effective search space: 148432203 Effective search space used: 148432203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.1 bits)