Query 537021.9.peg.945_1 Match_columns 39 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 03:48:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_945.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 KOG2221 consensus 25.2 34 0.00088 17.3 1.2 20 9-28 206-225 (267) 2 pfam10624 TraS Plasmid conjuga 23.3 42 0.0011 16.8 1.3 11 9-19 41-51 (164) 3 COG5217 BIM1 Microtubule-bindi 21.7 50 0.0013 16.4 1.5 15 11-25 180-194 (342) 4 COG4858 Uncharacterized membra 16.8 60 0.0015 16.0 1.0 25 7-31 170-194 (226) 5 pfam03008 DUF234 Archaea bacte 15.4 1.2E+02 0.003 14.4 2.3 22 7-28 28-50 (97) 6 KOG4560 consensus 14.3 85 0.0022 15.2 1.2 10 11-20 735-744 (1897) 7 KOG2442 consensus 12.7 1.3E+02 0.0034 14.2 1.8 20 3-22 355-374 (541) 8 KOG4465 consensus 11.4 1.6E+02 0.004 13.8 2.1 21 3-23 136-156 (598) 9 KOG0892 consensus 10.0 1.7E+02 0.0044 13.5 1.7 17 11-27 2289-2305(2806) 10 COG4321 Uncharacterized protei 10.0 1.1E+02 0.0028 14.6 0.7 12 1-12 25-36 (102) No 1 >KOG2221 consensus Probab=25.20 E-value=34 Score=17.31 Aligned_cols=20 Identities=25% Similarity=0.923 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHCC Q ss_conf 79999999999997997238 Q 537021.9.peg.9 9 NFLWVFIQICQQFIPRLINN 28 (39) Q Consensus 9 nflwvfiqicqqfiprlinn 28 (39) .-.|+|.|||..+.|-.--. T Consensus 206 daf~~~vqicekylqgy~~s 225 (267) T KOG2221 206 DAFWCFVQICEKYLQGYYSS 225 (267) T ss_pred HHHHHHHHHHHHHCCCCCCC T ss_conf 78999999999871654354 No 2 >pfam10624 TraS Plasmid conjugative transfer entry exclusion protein TraS. Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer. TraS on the recipient cell is known to form an interaction with TraG on the donor cell. Probab=23.32 E-value=42 Score=16.84 Aligned_cols=11 Identities=55% Similarity=1.204 Sum_probs=8.5 Q ss_pred HHHHHHHHHHH Q ss_conf 79999999999 Q 537021.9.peg.9 9 NFLWVFIQICQ 19 (39) Q Consensus 9 nflwvfiqicq 19 (39) -|.|.|+||-. T Consensus 41 lfiwlf~qirk 51 (164) T pfam10624 41 LFIWLFIQIRK 51 (164) T ss_pred HHHHHHHHHHH T ss_conf 99999999987 No 3 >COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton] Probab=21.72 E-value=50 Score=16.44 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999997997 Q 537021.9.peg.9 11 LWVFIQICQQFIPRL 25 (39) Q Consensus 11 lwvfiqicqqfiprl 25 (39) .-+-+|+||+||-.| T Consensus 180 ~Lra~qa~Qe~igSl 194 (342) T COG5217 180 YLRAMQACQEFIGSL 194 (342) T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999986111 No 4 >COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Probab=16.83 E-value=60 Score=16.00 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=20.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 2079999999999997997238221 Q 537021.9.peg.9 7 LPNFLWVFIQICQQFIPRLINNPLE 31 (39) Q Consensus 7 lpnflwvfiqicqqfiprlinnple 31 (39) +.-++|.+.-|.+-|+|.-+|--|. T Consensus 170 ~sm~lWi~v~i~t~~lPtslN~~L~ 194 (226) T COG4858 170 LSMLLWIAVMIATVFLPTSLNPQLP 194 (226) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999999999999507876786786 No 5 >pfam03008 DUF234 Archaea bacterial proteins of unknown function. Probab=15.44 E-value=1.2e+02 Score=14.42 Aligned_cols=22 Identities=27% Similarity=0.711 Sum_probs=16.3 Q ss_pred CCHHH-HHHHHHHHHHHHHHHCC Q ss_conf 20799-99999999997997238 Q 537021.9.peg.9 7 LPNFL-WVFIQICQQFIPRLINN 28 (39) Q Consensus 7 lpnfl-wvfiqicqqfiprlinn 28 (39) ++.|+ .+|-.+|.++++++.+. T Consensus 28 ~~~y~g~~FE~i~re~l~~~~~~ 50 (97) T pfam03008 28 LNEYLGFVFEELCRELLRELNKL 50 (97) T ss_pred HHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99998799999999999986434 No 6 >KOG4560 consensus Probab=14.33 E-value=85 Score=15.21 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=7.3 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q 537021.9.peg.9 11 LWVFIQICQQ 20 (39) Q Consensus 11 lwvfiqicqq 20 (39) |-.||||||- T Consensus 735 LSiF~~I~~V 744 (1897) T KOG4560 735 LSLFMLICRV 744 (1897) T ss_pred HHHHHHHHHH T ss_conf 9999987521 No 7 >KOG2442 consensus Probab=12.72 E-value=1.3e+02 Score=14.17 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=15.2 Q ss_pred CCEECCHHHHHHHHHHHHHH Q ss_conf 30102079999999999997 Q 537021.9.peg.9 3 TTIRLPNFLWVFIQICQQFI 22 (39) Q Consensus 3 ttirlpnflwvfiqicqqfi 22 (39) .++||||+-|..|-.|--|. T Consensus 355 k~vRLPnlK~~tiLL~c~f~ 374 (541) T KOG2442 355 KTVRLPNLKVCTILLLCLFL 374 (541) T ss_pred HHHCCCCHHHHHHHHHHHHH T ss_conf 98027750689999999998 No 8 >KOG4465 consensus Probab=11.42 E-value=1.6e+02 Score=13.76 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=16.6 Q ss_pred CCEECCHHHHHHHHHHHHHHH Q ss_conf 301020799999999999979 Q 537021.9.peg.9 3 TTIRLPNFLWVFIQICQQFIP 23 (39) Q Consensus 3 ttirlpnflwvfiqicqqfip 23 (39) ..-|.|..|+-||+.||..-. T Consensus 136 evcr~pthlfefid~~k~i~e 156 (598) T KOG4465 136 EVCRIPTHLFEFIDFCKDIKE 156 (598) T ss_pred HHHCCCHHHHHHHHHHHHHHH T ss_conf 886583589999999988999 No 9 >KOG0892 consensus Probab=10.01 E-value=1.7e+02 Score=13.54 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 99999999999799723 Q 537021.9.peg.9 11 LWVFIQICQQFIPRLIN 27 (39) Q Consensus 11 lwvfiqicqqfiprlin 27 (39) -|.||-.|+|+-+|+-+ T Consensus 2289 syKFip~~yQlAaRl~~ 2305 (2806) T KOG0892 2289 SYKFIPLVYQLAARLGN 2305 (2806) T ss_pred CCHHHHHHHHHHHHHCC T ss_conf 20107999999999644 No 10 >COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only] Probab=9.98 E-value=1.1e+02 Score=14.59 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=0.0 Q ss_pred CCCCEECCHHHH Q ss_conf 973010207999 Q 537021.9.peg.9 1 MSTTIRLPNFLW 12 (39) Q Consensus 1 msttirlpnflw 12 (39) |-|.+||-|+.| T Consensus 25 ~~TS~rLE~~FW 36 (102) T COG4321 25 HRTSVRLENPFW 36 (102) T ss_pred EEEEEEEHHHHH T ss_conf 266676312799 Done!