Query 537021.9.peg.950_1
Match_columns 40
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 04:28:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_950.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1mda_H Methylamine dehydrogen 36.2 7.7 0.00023 20.1 -0.3 16 14-29 4-22 (46)
2 >2wnm_A Gene 2, GP2; small pro 18.8 84 0.0025 14.9 2.7 24 3-26 6-29 (64)
3 >1xu1_R Tumor necrosis factor 11.1 66 0.0019 15.4 0.2 12 2-13 11-22 (42)
4 >1j71_A Candidapepsin, asparti 10.8 1.2E+02 0.0035 14.1 1.4 23 13-35 85-107 (112)
5 >3dy0_B C-terminus plasma seri 7.6 2E+02 0.0058 13.0 2.5 17 10-26 8-24 (29)
6 >1yo3_A Dynein light chain 1; 7.5 2E+02 0.0059 12.9 3.4 27 13-39 75-101 (102)
7 >2w02_A ACSD; SSPF, achromobac 6.7 2.2E+02 0.0065 12.7 3.1 29 3-31 22-50 (70)
8 >3fv3_A SAPP1P-secreted aspart 5.0 2.8E+02 0.0083 12.2 1.4 19 17-35 103-121 (126)
9 >2ww9_C Protein transport prot 4.7 1.2E+02 0.0035 14.1 -1.1 15 19-33 41-55 (87)
10 >1lnl_A Hemocyanin; deoxygenat 4.6 2.1E+02 0.0062 12.8 0.2 11 11-21 8-18 (103)
No 1
>>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} (H:122-167)
Probab=36.16 E-value=7.7 Score=20.11 Aligned_cols=16 Identities=56% Similarity=0.957 Sum_probs=11.2
Q ss_pred EEEEECC---CEEEEEEEC
Q ss_conf 7788418---759999942
Q 537021.9.peg.9 14 LLHIIGN---SQCFLMFEK 29 (40)
Q Consensus 14 llhiign---sqcflmfek 29 (40)
-.||||| |.|.|.|--
T Consensus 4 rvhiigncassacllfflf 22 (46)
T 1mda_H 4 RVHIIGNCASSACLLFFLF 22 (46)
T ss_dssp CTTSEEECTTSSCEEEEEC
T ss_pred CCCCEEECCCCCEEEEEEC
T ss_conf 7676598779998999938
No 2
>>2wnm_A Gene 2, GP2; small protein inhibntor bacterial RNA polymerase, hydrolase; NMR {Enterobacteria phage T7} (A:)
Probab=18.78 E-value=84 Score=14.85 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCCCCCCCEEEEEEEECCCEEEEE
Q ss_conf 211123672677788418759999
Q 537021.9.peg.9 3 YDSLQKDNVSFLLHIIGNSQCFLM 26 (40)
Q Consensus 3 ydslqkdnvsfllhiignsqcflm 26 (40)
-.||..+|-.|++++-|+++.|-.
T Consensus 6 ~gsl~~~~kKf~~tvEg~~~sfEv 29 (64)
T 2wnm_A 6 TGSLSVDNKKFWATVESSEHSFEV 29 (64)
T ss_dssp CCCCCSSSCEEEEEEECSSCEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 353231451699999136703898
No 3
>>1xu1_R Tumor necrosis factor receptor superfamily member 13B; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, hormone/growth factor receptor complex; 1.90A {Homo sapiens} (R:)
Probab=11.08 E-value=66 Score=15.39 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=9.9
Q ss_pred CCCCCCCCCEEE
Q ss_conf 521112367267
Q 537021.9.peg.9 2 YYDSLQKDNVSF 13 (40)
Q Consensus 2 yydslqkdnvsf 13 (40)
|||.|-+|-||-
T Consensus 11 YYD~Llr~CisC 22 (42)
T 1xu1_R 11 FYDHLLRDCISC 22 (42)
T ss_dssp EEETTTTEEEEG
T ss_pred HHHHHHHHHHHH
T ss_conf 899999998858
No 4
>>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} (A:193-304)
Probab=10.80 E-value=1.2e+02 Score=14.12 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=17.6
Q ss_pred EEEEEECCCEEEEEEECCCEEEE
Q ss_conf 77788418759999942761599
Q 537021.9.peg.9 13 FLLHIIGNSQCFLMFEKDDISII 35 (40)
Q Consensus 13 fllhiignsqcflmfekddisii 35 (40)
+++..-++.+|++.+..++..|+
T Consensus 85 yi~~~~~~~~C~~~~~~~~~~Il 107 (112)
T 1j71_A 85 LILKDSDSSICYFGISRNDANIL 107 (112)
T ss_dssp GEEECSSSSCEEESEEECTTCEE
T ss_pred EEEECCCCCEEEEEECCCCCCEE
T ss_conf 69974999789999478998599
No 5
>>3dy0_B C-terminus plasma serine protease inhibitor; serpin, blood clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo sapiens} PDB: 1lq8_B* (B:)
Probab=7.61 E-value=2e+02 Score=12.97 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=12.4
Q ss_pred CEEEEEEEECCCEEEEE
Q ss_conf 72677788418759999
Q 537021.9.peg.9 10 NVSFLLHIIGNSQCFLM 26 (40)
Q Consensus 10 nvsfllhiignsqcflm 26 (40)
|-.|+.-|..|+--||-
T Consensus 8 nrpflm~ivennilflg 24 (29)
T 3dy0_B 8 NRPFLMFIVDNNILFLG 24 (29)
T ss_dssp CSCEEEEEESSSEEEEE
T ss_pred CCCEEEEEEECCEEEEE
T ss_conf 68459999958789997
No 6
>>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A (A:)
Probab=7.45 E-value=2e+02 Score=12.93 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEECCCEEEEEEECCCEEEEEEEE
Q ss_conf 777884187599999427615999996
Q 537021.9.peg.9 13 FLLHIIGNSQCFLMFEKDDISIIKFRI 39 (40)
Q Consensus 13 fllhiignsqcflmfekddisiikfri 39 (40)
|--++.-...||+.|.-++++++-||-
T Consensus 75 Fgs~vth~~~~~i~f~~~~~~ill~Kt 101 (102)
T 1yo3_A 75 FGSYVTHETKNFIYFYIGQVAILLFKS 101 (102)
T ss_dssp CCCEEESCCCEEEEEEETTEEEEEEEC
T ss_pred EEEEEEECCCCEEEEEECCEEEEEEEC
T ss_conf 679999769948999959999999954
No 7
>>2w02_A ACSD; SSPF, achromobactin biosynthesis, metal transport, pectobacterium chrysanthemi; HET: ATP; 2.20A {Erwinia chrysanthemi} PDB: 2w03_A* 2w04_A* 3ffe_A (A:33-102)
Probab=6.74 E-value=2.2e+02 Score=12.74 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=18.7
Q ss_pred CCCCCCCCEEEEEEEECCCEEEEEEECCC
Q ss_conf 21112367267778841875999994276
Q 537021.9.peg.9 3 YDSLQKDNVSFLLHIIGNSQCFLMFEKDD 31 (40)
Q Consensus 3 ydslqkdnvsfllhiignsqcflmfekdd 31 (40)
.|..+-.........-..-|||.|....|
T Consensus 22 ~dg~~~kGiPl~I~Lpdq~Q~FVlVDRRD 50 (70)
T 2w02_A 22 FDGADWKGIPMMIGLPDQLQLFVMVDRRD 50 (70)
T ss_dssp BCSSSBSSEEEEEECTTSCEEEEEESSCC
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 33245787179997488877999985147
No 8
>>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, hydrolase; HET: STA; 1.85A {Candida parapsilosis} (A:184-309)
Probab=5.03 E-value=2.8e+02 Score=12.19 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=14.8
Q ss_pred EECCCEEEEEEECCCEEEE
Q ss_conf 8418759999942761599
Q 537021.9.peg.9 17 IIGNSQCFLMFEKDDISII 35 (40)
Q Consensus 17 iignsqcflmfekddisii 35 (40)
-.++..|.+.|...+..|+
T Consensus 103 ~~~~~~C~~gi~~~~~~Il 121 (126)
T 3fv3_A 103 QNGDGTCLWGIQPSDDTIL 121 (126)
T ss_dssp ECSSSCEEESEEECSSCEE
T ss_pred ECCCCEEEEEECCCCCCEE
T ss_conf 6899999999852998798
No 9
>>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C (C:)
Probab=4.65 E-value=1.2e+02 Score=14.11 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=6.4
Q ss_pred CCCEEEEEEECCCEE
Q ss_conf 187599999427615
Q 537021.9.peg.9 19 GNSQCFLMFEKDDIS 33 (40)
Q Consensus 19 gnsqcflmfekddis 33 (40)
|+|.-.|.|-.||-.
T Consensus 41 gss~~mlrfYTddsp 55 (87)
T 2ww9_C 41 GSSSSILKLYTDEAN 55 (87)
T ss_dssp ---------------
T ss_pred CCCCCCEEEECCCCC
T ss_conf 887520346516888
No 10
>>1lnl_A Hemocyanin; deoxygenated form, oxygen, copper, metal binding site, cooperativity, oxygen storage/transport complex; HET: NAG; 3.30A {Rapana thomasiana} (A:306-408)
Probab=4.59 E-value=2.1e+02 Score=12.82 Aligned_cols=11 Identities=55% Similarity=0.748 Sum_probs=0.0
Q ss_pred EEEEEEEECCC
Q ss_conf 26777884187
Q 537021.9.peg.9 11 VSFLLHIIGNS 21 (40)
Q Consensus 11 vsfllhiigns 21 (40)
.+||||=||.|
T Consensus 8 AgFlL~Gig~S 18 (103)
T 1lnl_A 8 AGFLLEGIGTS 18 (103)
T ss_dssp EEECCCCCSSC
T ss_pred EEEEECCCCCC
T ss_conf 31160347865
Done!