RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.97_1 (55 letters) >gnl|CDD|146680 pfam04168, DUF403, Bacterial domain of unknown function (DUF403). Length = 312 Score = 24.9 bits (55), Expect = 4.7 Identities = 5/12 (41%), Positives = 9/12 (75%) Query: 39 DIWRFLNIGKNI 50 + WRFL +G+ + Sbjct: 157 EGWRFLRLGRFL 168 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.333 0.147 0.450 Gapped Lambda K H 0.267 0.0738 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 672,642 Number of extensions: 24596 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 4 Length of query: 55 Length of database: 6,263,737 Length adjustment: 28 Effective length of query: 27 Effective length of database: 5,658,685 Effective search space: 152784495 Effective search space used: 152784495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 50 (23.0 bits)