RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.97_1
         (55 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, ATP-binding, cytoplasm, hydrolase,
           membrane; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 6/17 (35%), Positives = 14/17 (82%)

Query: 34  FNILIDIWRFLNIGKNI 50
           +N+L++++  L IG++I
Sbjct: 345 YNVLVELYGLLTIGQSI 361


>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR
          of basic residues, extracellular matrix, glycoprotein,
          hydrolase, metal-binding; HET: 886; 2.80A {Homo
          sapiens} PDB: 3b2z_A
          Length = 316

 Score = 24.4 bits (52), Expect = 6.1
 Identities = 2/41 (4%), Positives = 11/41 (26%)

Query: 10 LAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNI 50
            ++   +        +K  +          ++  +I   +
Sbjct: 10 TLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPV 50


>2v4b_A Adamts-1; zinc, zymogen, protease, hydrolase, metalloprotease,
          heparin-binding, metalloproteinase, metzincin,
          polymorphism, glycoprotein; 2.00A {Homo sapiens} PDB:
          2jih_A
          Length = 300

 Score = 24.5 bits (52), Expect = 6.6
 Identities = 3/41 (7%), Positives = 16/41 (39%)

Query: 10 LAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNI 50
            ++  +         +K  +   F++   +++  +I  ++
Sbjct: 10 TMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSV 50


>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR
          of basic residues, extracellular matrix, glycoprotein,
          hydrolase, metal-binding; HET: NAG BAT; 2.60A {Homo
          sapiens}
          Length = 378

 Score = 24.1 bits (51), Expect = 8.0
 Identities = 4/42 (9%), Positives = 15/42 (35%)

Query: 10 LAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNIK 51
          L ++            ++  +    +I   ++   +I  +I+
Sbjct: 10 LLLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIR 51


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.147    0.450 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 486,220
Number of extensions: 16083
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 7
Length of query: 55
Length of database: 5,693,230
Length adjustment: 27
Effective length of query: 28
Effective length of database: 5,038,642
Effective search space: 141081976
Effective search space used: 141081976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.5 bits)