Query 537021.9.peg.98_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 23 14:18:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_98.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 consensus 70.8 2.5 6.4E-05 23.2 1.7 19 12-30 302-320 (400)
2 KOG0958 consensus 18.9 69 0.0018 16.4 1.7 19 11-29 216-234 (690)
3 COG2924 Uncharacterized protei 12.0 79 0.002 16.1 0.5 20 10-29 61-80 (90)
4 PRK10689 transcription-repair 11.6 1.6E+02 0.004 14.7 1.9 17 12-28 847-863 (1148)
5 pfam04890 DUF648 Family of unk 11.5 1.1E+02 0.0027 15.5 1.0 29 1-29 1-33 (288)
6 cd01181 IPT_plexin_repeat3 Thi 10.1 87 0.0022 15.9 0.2 11 21-31 11-21 (99)
7 KOG1333 consensus 8.5 48 0.0012 17.1 -1.7 29 4-33 94-122 (241)
8 pfam09444 MRC1 MRC1-like domai 8.5 2.1E+02 0.0055 14.0 1.7 19 12-30 71-89 (145)
9 pfam07505 Gp37_Gp68 Phage prot 8.3 2.3E+02 0.0059 13.9 1.8 18 3-20 109-126 (253)
10 pfam06587 DUF1137 Protein of u 6.8 1.7E+02 0.0044 14.5 0.5 26 6-33 95-120 (159)
No 1
>KOG0328 consensus
Probab=70.76 E-value=2.5 Score=23.21 Aligned_cols=19 Identities=58% Similarity=0.777 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 3689999988622642102
Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGSRIT 30 (37)
Q Consensus 12 tkrlekimndffsggsrit 30 (37)
.|.-++|||||-||.||+-
T Consensus 302 qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328 302 QKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred HHHHHHHHHHHHCCCCEEE
T ss_conf 5679999987654783499
No 2
>KOG0958 consensus
Probab=18.94 E-value=69 Score=16.37 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.0
Q ss_pred EHHHHHHHHHHHHCCCCCC
Q ss_conf 3368999998862264210
Q 537021.9.peg.9 11 QTKRLEKIMNDFFSGGSRI 29 (37)
Q Consensus 11 qtkrlekimndffsggsri 29 (37)
..+|+||+|..+|++-++-
T Consensus 216 h~~rfekla~~~fp~~~~~ 234 (690)
T KOG0958 216 HGDRFEKLASELFPDSSQG 234 (690)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 8799999987547764447
No 3
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=12.00 E-value=79 Score=16.09 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.3
Q ss_pred EEHHHHHHHHHHHHCCCCCC
Q ss_conf 63368999998862264210
Q 537021.9.peg.9 10 VQTKRLEKIMNDFFSGGSRI 29 (37)
Q Consensus 10 vqtkrlekimndffsggsri 29 (37)
-..|-||+-|+.|+.+|.-.
T Consensus 61 e~Rk~Leqem~~flf~~~~~ 80 (90)
T COG2924 61 EHRKLLEQEMVNFLFEGKAV 80 (90)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999985357653
No 4
>PRK10689 transcription-repair coupling factor; Provisional
Probab=11.57 E-value=1.6e+02 Score=14.67 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 36899999886226421
Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGSR 28 (37)
Q Consensus 12 tkrlekimndffsggsr 28 (37)
.+.||++|.||+.|-..
T Consensus 847 ~~~~e~~m~~f~~~~~~ 863 (1148)
T PRK10689 847 ERELERVMNDFHHQRFN 863 (1148)
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 89999999999759988
No 5
>pfam04890 DUF648 Family of unknown function (DUF648). Family of hypothetical Chlamydia proteins. This family may well comprise of two domains, as some members only match the N-terminus.
Probab=11.54 E-value=1.1e+02 Score=15.48 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=22.1
Q ss_pred CCCCEEEEEEEHHHHHHHHH----HHHCCCCCC
Q ss_conf 98640687763368999998----862264210
Q 537021.9.peg.9 1 MNNFNLTYLVQTKRLEKIMN----DFFSGGSRI 29 (37)
Q Consensus 1 mnnfnltylvqtkrlekimn----dffsggsri 29 (37)
||-+...--|++-..+++|. -||-||.|+
T Consensus 1 M~~y~fsp~~~~s~~~~~ma~LDsyf~lgG~r~ 33 (288)
T pfam04890 1 MNVYTFSPTVRTSFSHRLMAALDSYFFLGGKRT 33 (288)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHEEECCCEE
T ss_conf 961672687788689999998876757578069
No 6
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=10.13 E-value=87 Score=15.87 Aligned_cols=11 Identities=55% Similarity=0.902 Sum_probs=8.0
Q ss_pred HHHCCCCCCCC
Q ss_conf 86226421027
Q 537021.9.peg.9 21 DFFSGGSRITN 31 (37)
Q Consensus 21 dffsggsritn 31 (37)
-|.|||+.||-
T Consensus 11 S~~SGG~~itV 21 (99)
T cd01181 11 SFLSGGTPITV 21 (99)
T ss_pred CCCCCCEEEEE
T ss_conf 21479979999
No 7
>KOG1333 consensus
Probab=8.51 E-value=48 Score=17.12 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=20.4
Q ss_pred CEEEEEEEHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 406877633689999988622642102752
Q 537021.9.peg.9 4 FNLTYLVQTKRLEKIMNDFFSGGSRITNNQ 33 (37)
Q Consensus 4 fnltylvqtkrlekimndffsggsritnnq 33 (37)
|-|.|-+|++|.+|. +.||.--+..+-||
T Consensus 94 ~yLV~~~q~nr~~K~-~EFF~K~a~~lqnq 122 (241)
T KOG1333 94 FYLVYTIQTNRNDKA-QEFFAKQATELQNQ 122 (241)
T ss_pred HHHHHHHHCCCHHHH-HHHHHHHHHHHHCC
T ss_conf 987655542780789-99999988987236
No 8
>pfam09444 MRC1 MRC1-like domain. This putative domain is found to be the most conserved region in mediator of replication checkpoint protein 1.
Probab=8.47 E-value=2.1e+02 Score=14.02 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 3689999988622642102
Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGSRIT 30 (37)
Q Consensus 12 tkrlekimndffsggsrit 30 (37)
-|.++|||.|.-.|+-|--
T Consensus 71 ek~v~KLl~DI~~G~lRrr 89 (145)
T pfam09444 71 EKEVEKLLDDITTGGLRRR 89 (145)
T ss_pred HHHHHHHHHHHHCCCHHHC
T ss_conf 9999999999862413414
No 9
>pfam07505 Gp37_Gp68 Phage protein Gp37/Gp68. Homologues of phage proteins Gp37 and Gp68 are found in several bacteria.
Probab=8.28 E-value=2.3e+02 Score=13.86 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.0
Q ss_pred CCEEEEEEEHHHHHHHHH
Q ss_conf 640687763368999998
Q 537021.9.peg.9 3 NFNLTYLVQTKRLEKIMN 20 (37)
Q Consensus 3 nfnltylvqtkrlekimn 20 (37)
+=+++|++-|||-|.+..
T Consensus 109 ~p~h~fqiLTKR~~r~~~ 126 (253)
T pfam07505 109 TPRHTFQILTKRPTRMRK 126 (253)
T ss_pred CCCCEEEEEECCHHHHHH
T ss_conf 889609997067889997
No 10
>pfam06587 DUF1137 Protein of unknown function (DUF1137). This family consists of several hypothetical proteins specific to Chlamydia species. The function of this family is unknown.
Probab=6.80 E-value=1.7e+02 Score=14.47 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=0.0
Q ss_pred EEEEEEHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6877633689999988622642102752
Q 537021.9.peg.9 6 LTYLVQTKRLEKIMNDFFSGGSRITNNQ 33 (37)
Q Consensus 6 ltylvqtkrlekimndffsggsritnnq 33 (37)
|+--.||...||.| ||.|.+..-|-|
T Consensus 95 lsG~i~Tq~~ek~M--~FrGngGLLNYq 120 (159)
T pfam06587 95 LSGHIQTQTAEKAM--FFRGNGGLLNYQ 120 (159)
T ss_pred HCCCEECCCHHHHH--EECCCCCCEECC
T ss_conf 03612300256564--770677501124
Done!