Query 537021.9.peg.98_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 14:22:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_98.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2j3w_A Sedlin, trafficking pro 10.6 45 0.0019 16.2 -0.0 21 15-35 109-129 (142) 2 2o1m_A Probable amino-acid ABC 10.4 99 0.0042 14.6 1.7 22 13-36 231-252 (258) 3 1t07_A Hypothetical UPF0269 pr 5.3 2.2E+02 0.0092 12.9 1.9 17 12-28 65-81 (94) 4 1jy2_N Fibrinogen alpha chain; 4.5 2.5E+02 0.011 12.7 1.6 14 12-25 38-51 (53) 5 1qys_A TOP7; alpha-beta, novel 4.4 2.6E+02 0.011 12.6 2.2 22 2-23 15-37 (106) 6 1xs8_A UPF0269 protein YGGX; h 4.4 2.6E+02 0.011 12.6 1.9 19 12-30 63-81 (91) 7 2rg8_A Programmed cell death p 4.1 2.7E+02 0.011 12.5 1.3 16 12-27 10-25 (165) 8 1ybk_A Tetrabrachion; right ha 3.9 2.8E+02 0.012 12.4 1.4 14 11-24 33-46 (52) 9 2jvf_A De novo protein M7; tet 3.6 3E+02 0.013 12.3 2.0 22 2-23 17-39 (96) 10 2jr2_A UPF0352 protein CPS_261 3.6 3E+02 0.013 12.3 1.5 14 11-24 8-21 (76) No 1 >2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: P1L; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Probab=10.60 E-value=45 Score=16.19 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.1 Q ss_pred HHHHHHHHHCCCCCCCCCCCC Q ss_conf 999998862264210275202 Q 537021.9.peg.9 15 LEKIMNDFFSGGSRITNNQFL 35 (37) Q Consensus 15 lekimndffsggsritnnqfl 35 (37) .+-+||-|++-|+.|+...|- T Consensus 109 v~~v~NPFy~~~~pI~s~~Fd 129 (142) T 2j3w_A 109 IKFAMNPFYEPNSPIRSSAFD 129 (142) T ss_dssp HHHHHSTTCCTTCCCCCHHHH T ss_pred HHHHHCCCCCCCCCCCCHHHH T ss_conf 999538788999950378999 No 2 >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Probab=10.41 E-value=99 Score=14.57 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 689999988622642102752025 Q 537021.9.peg.9 13 KRLEKIMNDFFSGGSRITNNQFLT 36 (37) Q Consensus 13 krlekimndffsggsritnnqflt 36 (37) -++++|++-+| |..++.+|||. T Consensus 231 G~~~~I~~Kw~--g~d~~~~~~~~ 252 (258) T 2o1m_A 231 GTLKRLSLKWL--GDDYSKEQYLE 252 (258) T ss_dssp THHHHHHHHHT--CTTC------- T ss_pred CHHHHHHHHHC--CCCCCHHHHHC T ss_conf 59999999877--99888213010 No 3 >1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1 Probab=5.29 E-value=2.2e+02 Score=12.93 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 36899999886226421 Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGSR 28 (37) Q Consensus 12 tkrlekimndffsggsr 28 (37) .+-|++-|..||.|+.- T Consensus 65 R~~L~~qM~~Flf~e~~ 81 (94) T 1t07_A 65 RKFLQQEMDKFLSGEDY 81 (94) T ss_dssp HHHHHHHHHHHTSSSCC T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 99999999999578987 No 4 >1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N Probab=4.54 E-value=2.5e+02 Score=12.66 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 36899999886226 Q 537021.9.peg.9 12 TKRLEKIMNDFFSG 25 (37) Q Consensus 12 tkrlekimndffsg 25 (37) ++|.+||-+-+|.+ T Consensus 38 ~~RI~kl~~~l~~~ 51 (53) T 1jy2_N 38 TSRINKLRDSLFNY 51 (53) T ss_dssp HHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999987741 No 5 >1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1 Probab=4.38 E-value=2.6e+02 Score=12.60 Aligned_cols=22 Identities=41% Similarity=0.819 Sum_probs=16.0 Q ss_pred CCCEEEEEEEH-HHHHHHHHHHH Q ss_conf 86406877633-68999998862 Q 537021.9.peg.9 2 NNFNLTYLVQT-KRLEKIMNDFF 23 (37) Q Consensus 2 nnfnltylvqt-krlekimndff 23 (37) .||..+|-|.| +.|+|..|... T Consensus 15 q~~d~~~~VsT~~ELqr~L~EL~ 37 (106) T 1qys_A 15 KNFDYTYTVTTESELQKVLNELM 37 (106) T ss_dssp CEEEEEEEESSSSHHHHHHHHHH T ss_pred CEEEEEEEEECHHHHHHHHHHHH T ss_conf 18889999805489999999999 No 6 >1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A Probab=4.38 E-value=2.6e+02 Score=12.60 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 3689999988622642102 Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGSRIT 30 (37) Q Consensus 12 tkrlekimndffsggsrit 30 (37) .+-|++-|..||.|+.-.. T Consensus 63 r~~L~~qm~~Flf~~~~~~ 81 (91) T 1xs8_A 63 RKLLEQEMVSFLFEGKDVH 81 (91) T ss_dssp HHHHHHHHHHHHTCCCSSC T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 9999999999836898778 No 7 >2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} Probab=4.13 E-value=2.7e+02 Score=12.49 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 3689999988622642 Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGS 27 (37) Q Consensus 12 tkrlekimndffsggs 27 (37) .|+.+.|+++||+.+. T Consensus 10 kk~~~~il~EYf~~~D 25 (165) T 2rg8_A 10 EKTLTPIIQEYFEHGD 25 (165) T ss_dssp HHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHCCC T ss_conf 9999999999985899 No 8 >1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A Probab=3.88 E-value=2.8e+02 Score=12.39 Aligned_cols=14 Identities=50% Similarity=0.660 Sum_probs=10.5 Q ss_pred EHHHHHHHHHHHHC Q ss_conf 33689999988622 Q 537021.9.peg.9 11 QTKRLEKIMNDFFS 24 (37) Q Consensus 11 qtkrlekimndffs 24 (37) ...|||-|.||-.| T Consensus 33 radrlemiindnvs 46 (52) T 1ybk_A 33 RADRLEMIINDNVS 46 (52) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHH T ss_conf 46354654427788 No 9 >2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1 Probab=3.61 E-value=3e+02 Score=12.26 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=16.1 Q ss_pred CCCEEEEEEEH-HHHHHHHHHHH Q ss_conf 86406877633-68999998862 Q 537021.9.peg.9 2 NNFNLTYLVQT-KRLEKIMNDFF 23 (37) Q Consensus 2 nnfnltylvqt-krlekimndff 23 (37) .||..+|-|.| +.|+|..|..- T Consensus 17 q~~e~~~~VsT~~EL~r~L~EL~ 39 (96) T 2jvf_A 17 QEIEIDIRVSTGKELERALQELE 39 (96) T ss_dssp EEEEEEEECCSSSHHHHHHHHHH T ss_pred CEEEEEEEEECHHHHHHHHHHHH T ss_conf 28889999814389999999999 No 10 >2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, protein structure initiative; NMR {Colwellia psychrerythraea 34H} SCOP: a.284.1.1 PDB: 2ota_A Probab=3.61 E-value=3e+02 Score=12.26 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.1 Q ss_pred EHHHHHHHHHHHHC Q ss_conf 33689999988622 Q 537021.9.peg.9 11 QTKRLEKIMNDFFS 24 (37) Q Consensus 11 qtkrlekimndffs 24 (37) +.+..|+|++|.+. T Consensus 8 sd~qvE~il~el~~ 21 (76) T 2jr2_A 8 SNERVEKIIQDLLD 21 (76) T ss_dssp CHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 48989999999999 Done!